Regulog NorR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NorR
- By taxonomy - Vibrionales
- By TF family - Fis
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 3 | 3 |
| Vibrio vulnificus CMCP6 | 4 | 2 |
| Vibrio harveyi ATCC BAA-1116 | ||
| Vibrio parahaemolyticus RIMD 2210633 | ||
| Vibrio shilonii AK1 | 6 | 4 |
| Vibrio splendidus LGP32 | 7 | 5 |
| Vibrio fischeri ES114 | 5 | 2 |
| Vibrio salmonicida LFI1238 | 5 | 2 |
| Vibrio angustum S14 | ||
| Photobacterium profundum SS9 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| norR1 |
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Vibrio vulnificus CMCP6 Site: position = -32 score = 5.82823 sequence = AATTGTCATATTGACATTA Site: position = -52 score = 5.50033 sequence = TTTTGTCATTTAGACACTA Site: position = -76 score = 5.60306 sequence = CAGTGTCTAAATGACACTA Gene: VV21342: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Vibrio shilonii AK1 Site: position = -32 score = 5.51684 sequence = AATTGTCATATTGACAAAG Site: position = -52 score = 5.13988 sequence = AGATGTCATTTAGACATTA Site: position = -76 score = 5.09883 sequence = AACTGTCTAAACGACACTG Gene: VSAK1_23829: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Vibrio fischeri ES114 Site: position = -38 score = 5.35827 sequence = AATTGTCAAATTAACACTG Site: position = -83 score = 5.6093 sequence = AAGTGTCATTATGACAATC Site: position = -58 score = 5.37 sequence = TTTTGTCAAAACGACACTA Gene: VF_1783: anaerobic nitric oxide reductase transcription regulator, Fis family |
*
Vibrio salmonicida LFI1238 Site: position = -39 score = 5.42653 sequence = AATAGTCAAATTGACATTA Site: position = -59 score = 5.2065 sequence = TTCTGTCAAAAAGACAGTA Site: position = -84 score = 5.64428 sequence = AAATGTCAATTTGACACTC Gene: VSAL_I2198: anaerobic nitric oxide reductase transcription regulator, Fis family |
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anaerobic nitric oxide reductase transcription regulator, Fis family |
| CRON 2. | |||||||||||
| norV |
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Vibrio vulnificus CMCP6 Site: position = -170 score = 5.50033 sequence = TAGTGTCTAAATGACAAAA Site: position = -190 score = 5.82823 sequence = TAATGTCAATATGACAATT Site: position = -146 score = 5.60306 sequence = TAGTGTCATTTAGACACTG Gene: VV21343: Anaerobic nitric oxide reductase flavorubredoxin |
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Vibrio shilonii AK1 Site: position = -138 score = 5.09883 sequence = CAGTGTCGTTTAGACAGTT Site: position = -162 score = 5.13988 sequence = TAATGTCTAAATGACATCT Site: position = -182 score = 5.51684 sequence = CTTTGTCAATATGACAATT Gene: VSAK1_23834: Anaerobic nitric oxide reductase flavorubredoxin |
*
Vibrio splendidus LGP32 Site: position = -10 score = 4.75105 sequence = TATTATCATTATGACTATT Site: position = -168 score = 4.39182 sequence = CTGAGTCATAAAGACACCT Gene: VS_II1439: Anaerobic nitric oxide reductase flavorubredoxin |
*
Vibrio fischeri ES114 Site: position = -123 score = 5.6093 sequence = GATTGTCATAATGACACTT Site: position = -148 score = 5.37 sequence = TAGTGTCGTTTTGACAAAA Site: position = -168 score = 5.35827 sequence = CAGTGTTAATTTGACAATT Gene: VF_1782: Anaerobic nitric oxide reductase flavorubredoxin |
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Vibrio salmonicida LFI1238 Site: position = -122 score = 5.64428 sequence = GAGTGTCAAATTGACATTT Site: position = -147 score = 5.2065 sequence = TACTGTCTTTTTGACAGAA Site: position = -167 score = 5.42653 sequence = TAATGTCAATTTGACTATT Gene: VSAL_I2199: Anaerobic nitric oxide reductase flavorubredoxin |
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Gene: PBPRA1144: Anaerobic nitric oxide reductase flavorubredoxin |
Anaerobic nitric oxide reductase flavorubredoxin |
| norW |
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Gene: VV21344: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
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Gene: VSAK1_23839: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Gene: VS_II1440: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Gene: VF_1781: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Gene: VSAL_I2200: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
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Gene: PBPRA1143: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
| fpr |
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Gene: VV20962: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Gene: VIBHAR_06648: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Gene: VPA1586: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Gene: VSAK1_05610: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
*
Vibrio splendidus LGP32 Site: position = -127 score = 4.96888 sequence = AGATGTCATTTAGACACAA Site: position = -103 score = 4.63283 sequence = CAAAGTCTATTTGACATCA Gene: VS_II0152: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Gene: VF_1780: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Gene: VSAL_I2201: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Gene: VAS14_21517: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Gene: PBPRA0238: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
| tehB |
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Gene: VV21345: tellurite resistance protein B |
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*2
Vibrio shilonii AK1 Gene: VSAK1_23844: tellurite resistance protein B Site: position = -186 score = 4.18646 sequence = TGAGGTCGTTATGACACAA Gene: VSAK1_17902: tellurite resistance protein B |
Gene: VS_II0151: tellurite resistance protein B |
Gene: VF_1779: tellurite resistance protein B |
Gene: VSAL_I2202: tellurite resistance protein B |
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Gene: PBPRA2631: tellurite resistance protein B |
tellurite resistance protein B |
| CRON 3. | |||||||||||
| nnrS |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -56 score = 4.89516 sequence = TGGTGTCATTATGACTTTT Site: position = -80 score = 4.26157 sequence = AAAAGTCATAATGACTCGA Gene: VC2330: heme and Cu protein, response to NO |
Gene: VV1_1781: heme and Cu protein, response to NO |
Gene: VIBHAR_03317: heme and Cu protein, response to NO |
Gene: VP2390: heme and Cu protein, response to NO |
Gene: VSAK1_10668: heme and Cu protein, response to NO |
*
Vibrio splendidus LGP32 Site: position = -187 score = 4.82609 sequence = GTGTGTTTAATTGACACTT Gene: VS_2426: heme and Cu protein, response to NO |
Gene: VF_A0439: heme and Cu protein, response to NO |
Gene: VSAL_II0720: heme and Cu protein, response to NO |
Gene: VAS14_11974: heme and Cu protein, response to NO |
Gene: PBPRB0907: heme and Cu protein, response to NO |
heme and Cu protein, response to NO |
| CRON 4. | |||||||||||
| hmp |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -157 score = 5.06408 sequence = TAGTGTCAAATCGACACGA Gene: VCA0183: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VV1_1301: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VIBHAR_00087: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VP2809: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VSAK1_23194: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Vibrio splendidus LGP32 Site: position = -52 score = 4.5808 sequence = ATTAGTCAATTTGACATGA Site: position = -193 score = 4.4739 sequence = TGTTGTCTATATGACTGAA Gene: VS_II0564: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VF_2316: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VSAL_I2770: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VAS14_18799: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
| CRON 5. | |||||||||||
| norR2 |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -52 score = 5.06408 sequence = TCGTGTCGATTTGACACTA Gene: VCA0182: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Vibrio shilonii AK1 Site: position = -59 score = 4.53131 sequence = TTAGGTCAATATGACTCTA Gene: VSAK1_23189: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Vibrio splendidus LGP32 Site: position = -53 score = 4.91939 sequence = TTATGTCATAAAGACTCTA Site: position = -75 score = 4.30432 sequence = TTTAGTCAAAAAGACCTTT Site: position = -175 score = 4.4739 sequence = TTCAGTCATATAGACAACA Gene: VS_II0563: anaerobic nitric oxide reductase transcription regulator, Fis family |
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anaerobic nitric oxide reductase transcription regulator, Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |