Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Vibrio angustum S14

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AgaR N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate N-acetylgalactosamine utilization 1 2
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 5 4
TF BirA Biotin Biotin biosynthesis 2 2
TF CueR Copper ion, (Cu+) Copper resistance 3 2
TF EbgR Beta-galactosides Galactosides utilization 2 6
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 8 5
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 9 7
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 6
TF Fur Iron ion, (Fe2+) Iron homeostasis 35 36
TF GalR Galactose Galactose utilization 2 1
TF GntR Gluconate Gluconate utilization 3 4
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 19 15
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF LexA DNA damage SOS response 16 15
TF LiuR Branched-chain amino acid degradation 4 4
TF MalI Maltose utilization 2 5
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 12 22
TF MetR Homocysteine Methionine biosynthesis 4 4
TF ModE Molybdate Molybdenum homeostasis 1 1
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 19 14
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 17 3
TF NmlR Diamide Carbonyl stress response 1 1
TF NorR2 Nitric oxide Nitrosative stress response 2 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 5 5
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF PdhR Pyruvate Pyruvate metabolism 1 1
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 4 5
TF PhrR Heat shock; Adenosylcobalamin Light-dependent DNA repair 3 1
TF PsrA Oleate Fatty acid degradation 9 6
TF PurR Hypoxanthine; Guanine Purine metabolism 16 12
TF RbsR Ribose Ribose utilization 1 2
TF SoxR Paraquat Superoxide stress response 4 3
TF TrpR Tryptophan Tryptophan biosynthesis 3 3
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 9 8
TF VEA_000881 Metabolite transport 1 1
TF VSAK1_09283 Metabolite transport 2 4
TF VSAL_I1306 2 4
TF VV21354 Metabolite transport 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 3 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 3
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 2 2
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