Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Vibrio cholerae O1 biovar eltor str. N16961

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 9 13
TF BirA Biotin Biotin biosynthesis 2 2
TF CelR Cellobiose-6-phosphate Cellobiose utilization 2 2
TF CelR2 Cellobiose-6-phosphate Cellobiose utilization 1 2
TF CueR Copper ion, (Cu+) Copper resistance 3 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 6 5
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 8 7
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 6
TF Fur Iron ion, (Fe2+) Iron homeostasis 38 40
TF GalR Galactose Galactose utilization 5 3
TF GntR Gluconate Gluconate utilization 3 5
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 23 18
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF LexA DNA damage SOS response 19 21
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 11 21
TF MetR Homocysteine Methionine biosynthesis 4 4
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 25 24
TF NanR (SiaQ) N-acetylmannosamine-6-phosphate Sialic acid utilization 3 3
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 12 10
TF NorR Nitric oxide Nitrosative stress response 3 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 3 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF PdhR Pyruvate Pyruvate metabolism 1 2
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 3 5
TF PhrR Heat shock; Adenosylcobalamin Light-dependent DNA repair 2 3
TF PrpR 2-methylcitrate Methylcitrate utilization 1 3
TF PsrA Oleate Fatty acid degradation 7 6
TF PurR Hypoxanthine; Guanine Purine metabolism 18 16
TF RbsR Ribose Ribose utilization 1 1
TF ScrR Sucrose-6-phosphate Sucrose utilization 4 4
TF SdaR D-glycerate Glycerate utilization 1 1
TF SoxR Paraquat Superoxide stress response 2 2
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 4 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 8 9
TF VCA0673 3 3
TF YdcR 2 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 2 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 2 2
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 3
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA yybP-ykoY 2 2
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