Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NorR2 - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: repressor (activator)
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 19 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio angustum S14 3 2
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114 3 2
Vibrio harveyi ATCC BAA-1116 2 2
Vibrio parahaemolyticus RIMD 2210633 3 2
Vibrio salmonicida LFI1238
Vibrio shilonii AK1
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6 3 2
Photobacterium profundum SS9 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
norR2
*
Vibrio angustum S14

Site:
position = -51
score = 5.53478
sequence = TGTTGTAATAAAGACAACA

Gene: VAS14_14734: anaerobic nitric oxide reductase transcription regulator, Fis family
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio fischeri ES114

Site:
position = -39
score = 5.9585
sequence = TGATGTAAATTTTACATCA

Gene: VF_A0862: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -61
score = 5.40649
sequence = CGATGTTCAAATGACATCA

Gene: VIBHAR_02686: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -61
score = 5.40649
sequence = CGATGTTCAAATGACATCA

Gene: VP1190: anaerobic nitric oxide reductase transcription regulator, Fis family
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
*
Vibrio vulnificus CMCP6

Site:
position = -94
score = 4.7817
sequence = CGACGTCAATAGAACATCA

Site:
position = -60
score = 5.15919
sequence = CGATGTTCAAATGACAACA

Gene: VV1_2863: anaerobic nitric oxide reductase transcription regulator, Fis family
*
Photobacterium profundum SS9

Site:
position = -41
score = 5.79603
sequence = CGATGTAAAAATCACATCA

Gene: PBPRB1897: anaerobic nitric oxide reductase transcription regulator, Fis family
anaerobic nitric oxide reductase transcription regulator, Fis family
 
CRON 2.
hcp
*
Vibrio angustum S14

Site:
position = -148
score = 5.79266
sequence = CGATGTTTTTATTACATCA

Site:
position = -172
score = 5.80375
sequence = TGATGTAATAATAACAACA

Gene: VAS14_14739: Hydroxylamine reductase (EC 1.7.-.-)
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio fischeri ES114

Site:
position = -225
score = 5.89847
sequence = TGATGTATTTATAACATCA

Site:
position = -201
score = 5.20591
sequence = CGTAGTCATTAATACATCA

Gene: VF_A0863: Hydroxylamine reductase (EC 1.7.-.-)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -159
score = 5.36503
sequence = CGTTGTCATTTGTACATCA

Site:
position = -136
score = 5.05059
sequence = CGTTGTCACAATCACATCA

Gene: VIBHAR_02687: Hydroxylamine reductase (EC 1.7.-.-)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -136
score = 5.67626
sequence = CGTTGTCTTAATTACATCA

Site:
position = -159
score = 5.92355
sequence = CGATGTAATTAAGACATCA

Gene: VP1189: Hydroxylamine reductase (EC 1.7.-.-)
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1

Gene: VSAK1_16922: Hydroxylamine reductase (EC 1.7.-.-)
 
Vibrio splendidus LGP32

Gene: VS_II0344: Hydroxylamine reductase (EC 1.7.-.-)
*
Vibrio vulnificus CMCP6

Site:
position = -187
score = 5.04761
sequence = TGATGTAAAAAAGACACGG

Site:
position = -165
score = 4.75699
sequence = GCGTGTCTTTTTTACATCA

Gene: VV1_2864: Hydroxylamine reductase (EC 1.7.-.-)
*
Photobacterium profundum SS9

Site:
position = -146
score = 5.30149
sequence = CGTTGTAATAACCACATCA

Site:
position = -169
score = 6.05104
sequence = TGATGTAATTATCACATCA

Gene: PBPRB1896: Hydroxylamine reductase (EC 1.7.-.-)
Hydroxylamine reductase (EC 1.7.-.-)
hcr
 
Vibrio angustum S14

Gene: VAS14_14744: NADH oxidoreductase hcr (EC 1.-.-.-)
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114

Gene: VF_A0864: NADH oxidoreductase hcr (EC 1.-.-.-)
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1188: NADH oxidoreductase hcr (EC 1.-.-.-)
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1

Gene: VSAK1_16917: NADH oxidoreductase hcr (EC 1.-.-.-)
 
Vibrio splendidus LGP32

Gene: VS_II0345: NADH oxidoreductase hcr (EC 1.-.-.-)
 
Vibrio vulnificus CMCP6

Gene: VV1_2865: NADH oxidoreductase hcr (EC 1.-.-.-)
 
Photobacterium profundum SS9

Gene: PBPRB1895: NADH oxidoreductase hcr (EC 1.-.-.-)
NADH oxidoreductase hcr (EC 1.-.-.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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