Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PBPRB0322 - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Photobacterium profundum SS9 2 2
Vibrio angustum S14
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio salmonicida LFI1238
Vibrio shilonii AK1 2 2
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01810
*
Photobacterium profundum SS9

Site:
position = -91
score = 7.63085
sequence = AATTGTTAT-(9)-TGAACAATA

Site:
position = -167
score = 7.7817
sequence = CATTGTCAC-(10)-GGTACATTT

Gene: PBPRB0323: Transporter, LysE family
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio salmonicida LFI1238
*
Vibrio shilonii AK1

Site:
position = -145
score = 6.08969
sequence = AATTGTTTC-(9)-GGATAAATA

Site:
position = -169
score = 7.81636
sequence = CATTGTCTC-(10)-GGTACAATT

Gene: VSAK1_02854: Transporter, LysE family
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Transporter, LysE family
 
CRON 2.
PBPRB0322
*
Photobacterium profundum SS9

Site:
position = -94
score = 7.63085
sequence = TATTGTTCA-(9)-ATAACAATT

Site:
position = -19
score = 7.7817
sequence = AAATGTACC-(10)-GTGACAATG

Gene: PBPRB0322: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio salmonicida LFI1238
*
Vibrio shilonii AK1

Site:
position = -48
score = 6.08969
sequence = TATTTATCC-(9)-GAAACAATT

Site:
position = -25
score = 7.81636
sequence = AATTGTACC-(10)-GAGACAATG

Gene: VSAK1_02859: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD