Regulog YdcR - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Photobacterium profundum SS9	1	1
Vibrio angustum S14
Vibrio cholerae O1 biovar eltor str. N16961	2	1
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116	2	2
Vibrio parahaemolyticus RIMD 2210633	4	3
Vibrio salmonicida LFI1238
Vibrio shilonii AK1
Vibrio splendidus LGP32	4	3
Vibrio vulnificus CMCP6	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
VIBHAR_01895	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio fischeri ES114	* Vibrio harveyi ATCC BAA-1116 Site: position = -95 score = 7.30109 sequence = AACTGTTTGATCTTT-(9)-AACTGTATCAGAAAC Gene: VIBHAR_01895: hypothetical protein	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -34 score = 6.59206 sequence = AACTGTTTACCTATT-(9)-AACTGTATCAGTGAA Gene: VP1894: hypothetical protein	Vibrio salmonicida LFI1238	Vibrio shilonii AK1 Gene: VSAK1_17527: hypothetical protein	* Vibrio splendidus LGP32 Site: position = -92 score = 5.47183 sequence = AACTGTACGGACTGA-(9)-AACTGTACGCCTTCT Gene: VS_1813: hypothetical protein	* Vibrio vulnificus CMCP6 Site: position = -92 score = 7.19261 sequence = AACTGATTAGGGATT-(9)-AACTGTGCCTGTAGA Gene: VV1_2253: hypothetical protein	hypothetical protein

CRON 2.
COG0348	* Photobacterium profundum SS9 Site: position = -145 score = 5.49994 sequence = CCTTGTTAGAGTAAT-(9)-GACTGTTATATAATC Gene: PBPRA3588: Polyferredoxin	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0036: Polyferredoxin	Vibrio fischeri ES114 Gene: VF_2551: Polyferredoxin	* Vibrio harveyi ATCC BAA-1116 Site: position = -228 score = 7.27834 sequence = AACTGTTCAGTCATT-(9)-AACTGTACTGACTTT Gene: VIBHAR_00402: Polyferredoxin	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -155 score = 6.7491 sequence = AACTGTTCAGCCGTT-(9)-AACTGTACTGACTTT Gene: VP3052: Polyferredoxin	Vibrio salmonicida LFI1238 Gene: VSAL_I0046: Polyferredoxin	Vibrio shilonii AK1 Gene: VSAK1_24445: Polyferredoxin	* Vibrio splendidus LGP32 Site: position = -246 score = 7.0899 sequence = TTCTGTTCGCTATTT-(9)-AACTGTTATGACTTT Gene: VS_3138: Polyferredoxin	* Vibrio vulnificus CMCP6 Site: position = -224 score = 5.72589 sequence = CACTGTTCAGCGAAA-(9)-AATTGTCCTGCTTTT Gene: VV1_1038: Polyferredoxin	Polyferredoxin

CRON 3.
PF01654	Photobacterium profundum SS9	Vibrio angustum S14	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -99 score = 9.0861 sequence = ATCTGTTCTATTTTT-(9)-AACTGTTCTAGTTCT Gene: VCA0872: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -100 score = 8.02029 sequence = ATCTGTTATAGGTTT-(9)-GTCTGTACCTACTTC Gene: VPA1137: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Vibrio salmonicida LFI1238	Vibrio shilonii AK1	* Vibrio splendidus LGP32 Site: position = -112 score = 9.15869 sequence = ATCTGTTCTGTTTTT-(9)-ATCTGTTCTAGTTTG Gene: VS_1690: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	Vibrio vulnificus CMCP6	Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
PF02322	Photobacterium profundum SS9	Vibrio angustum S14	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VCA0873: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Vibrio fischeri ES114	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1138: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Vibrio salmonicida LFI1238	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_1689: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	Vibrio vulnificus CMCP6	Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdcR - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --