Regulog YdcR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Photobacterium profundum SS9 | 1 | 1 |
| Vibrio angustum S14 | ||
| Vibrio cholerae O1 biovar eltor str. N16961 | 2 | 1 |
| Vibrio fischeri ES114 | ||
| Vibrio harveyi ATCC BAA-1116 | 2 | 2 |
| Vibrio parahaemolyticus RIMD 2210633 | 4 | 3 |
| Vibrio salmonicida LFI1238 | ||
| Vibrio shilonii AK1 | ||
| Vibrio splendidus LGP32 | 4 | 3 |
| Vibrio vulnificus CMCP6 | 2 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| VIBHAR_01895 |
|
|
|
|
*
Vibrio harveyi ATCC BAA-1116 Site: position = -95 score = 7.30109 sequence = AACTGTTTGATCTTT-(9)-AACTGTATCAGAAAC Gene: VIBHAR_01895: hypothetical protein |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -34 score = 6.59206 sequence = AACTGTTTACCTATT-(9)-AACTGTATCAGTGAA Gene: VP1894: hypothetical protein |
|
Gene: VSAK1_17527: hypothetical protein |
*
Vibrio splendidus LGP32 Site: position = -92 score = 5.47183 sequence = AACTGTACGGACTGA-(9)-AACTGTACGCCTTCT Gene: VS_1813: hypothetical protein |
*
Vibrio vulnificus CMCP6 Site: position = -92 score = 7.19261 sequence = AACTGATTAGGGATT-(9)-AACTGTGCCTGTAGA Gene: VV1_2253: hypothetical protein |
hypothetical protein |
| CRON 2. | |||||||||||
| COG0348 |
*
Photobacterium profundum SS9 Site: position = -145 score = 5.49994 sequence = CCTTGTTAGAGTAAT-(9)-GACTGTTATATAATC Gene: PBPRA3588: Polyferredoxin |
|
Gene: VC0036: Polyferredoxin |
Gene: VF_2551: Polyferredoxin |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -228 score = 7.27834 sequence = AACTGTTCAGTCATT-(9)-AACTGTACTGACTTT Gene: VIBHAR_00402: Polyferredoxin |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -155 score = 6.7491 sequence = AACTGTTCAGCCGTT-(9)-AACTGTACTGACTTT Gene: VP3052: Polyferredoxin |
Gene: VSAL_I0046: Polyferredoxin |
Gene: VSAK1_24445: Polyferredoxin |
*
Vibrio splendidus LGP32 Site: position = -246 score = 7.0899 sequence = TTCTGTTCGCTATTT-(9)-AACTGTTATGACTTT Gene: VS_3138: Polyferredoxin |
*
Vibrio vulnificus CMCP6 Site: position = -224 score = 5.72589 sequence = CACTGTTCAGCGAAA-(9)-AATTGTCCTGCTTTT Gene: VV1_1038: Polyferredoxin |
Polyferredoxin |
| CRON 3. | |||||||||||
| PF01654 |
|
|
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -99 score = 9.0861 sequence = ATCTGTTCTATTTTT-(9)-AACTGTTCTAGTTCT Gene: VCA0872: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
|
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -100 score = 8.02029 sequence = ATCTGTTATAGGTTT-(9)-GTCTGTACCTACTTC Gene: VPA1137: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
|
|
*
Vibrio splendidus LGP32 Site: position = -112 score = 9.15869 sequence = ATCTGTTCTGTTTTT-(9)-ATCTGTTCTAGTTTG Gene: VS_1690: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
|
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) |
| PF02322 |
|
|
Gene: VCA0873: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
|
|
Gene: VPA1138: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
|
|
Gene: VS_1689: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
|
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |