Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YdcR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Photobacterium profundum SS9 1 1
Vibrio angustum S14
Vibrio cholerae O1 biovar eltor str. N16961 2 1
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116 2 2
Vibrio parahaemolyticus RIMD 2210633 4 3
Vibrio salmonicida LFI1238
Vibrio shilonii AK1
Vibrio splendidus LGP32 4 3
Vibrio vulnificus CMCP6 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
VIBHAR_01895
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -95
score = 7.30109
sequence = AACTGTTTGATCTTT-(9)-AACTGTATCAGAAAC

Gene: VIBHAR_01895: hypothetical protein
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -34
score = 6.59206
sequence = AACTGTTTACCTATT-(9)-AACTGTATCAGTGAA

Gene: VP1894: hypothetical protein
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1

Gene: VSAK1_17527: hypothetical protein
*
Vibrio splendidus LGP32

Site:
position = -92
score = 5.47183
sequence = AACTGTACGGACTGA-(9)-AACTGTACGCCTTCT

Gene: VS_1813: hypothetical protein
*
Vibrio vulnificus CMCP6

Site:
position = -92
score = 7.19261
sequence = AACTGATTAGGGATT-(9)-AACTGTGCCTGTAGA

Gene: VV1_2253: hypothetical protein
hypothetical protein
 
CRON 2.
COG0348
*
Photobacterium profundum SS9

Site:
position = -145
score = 5.49994
sequence = CCTTGTTAGAGTAAT-(9)-GACTGTTATATAATC

Gene: PBPRA3588: Polyferredoxin
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC0036: Polyferredoxin
 
Vibrio fischeri ES114

Gene: VF_2551: Polyferredoxin
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -228
score = 7.27834
sequence = AACTGTTCAGTCATT-(9)-AACTGTACTGACTTT

Gene: VIBHAR_00402: Polyferredoxin
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -155
score = 6.7491
sequence = AACTGTTCAGCCGTT-(9)-AACTGTACTGACTTT

Gene: VP3052: Polyferredoxin
 
Vibrio salmonicida LFI1238

Gene: VSAL_I0046: Polyferredoxin
 
Vibrio shilonii AK1

Gene: VSAK1_24445: Polyferredoxin
*
Vibrio splendidus LGP32

Site:
position = -246
score = 7.0899
sequence = TTCTGTTCGCTATTT-(9)-AACTGTTATGACTTT

Gene: VS_3138: Polyferredoxin
*
Vibrio vulnificus CMCP6

Site:
position = -224
score = 5.72589
sequence = CACTGTTCAGCGAAA-(9)-AATTGTCCTGCTTTT

Gene: VV1_1038: Polyferredoxin
Polyferredoxin
 
CRON 3.
PF01654
 
Photobacterium profundum SS9
 
Vibrio angustum S14
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -99
score = 9.0861
sequence = ATCTGTTCTATTTTT-(9)-AACTGTTCTAGTTCT

Gene: VCA0872: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -100
score = 8.02029
sequence = ATCTGTTATAGGTTT-(9)-GTCTGTACCTACTTC

Gene: VPA1137: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
*
Vibrio splendidus LGP32

Site:
position = -112
score = 9.15869
sequence = ATCTGTTCTGTTTTT-(9)-ATCTGTTCTAGTTTG

Gene: VS_1690: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
 
Vibrio vulnificus CMCP6
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
PF02322
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VCA0873: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VPA1138: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32

Gene: VS_1689: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
 
Vibrio vulnificus CMCP6
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD