Regulon of PsrA in Vibrio parahaemolyticus RIMD 2210633
| Regulator type: | Transcription factor |
| TF locus tag: | VP1229 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PsrA
- By taxonomy - Vibrionales
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -87
Score: 5.5 Sequence: ATGTAAACACCTGTTTGATT
Locus tag: VP2151
Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
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fadH
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2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
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Position: -175
Score: 5.5 Sequence: TGTTAAACACTTGTTTAAAA
Locus tag: VP0030
Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: VP0029
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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fadB
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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fadA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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Position: -78
Score: 5.6 Sequence: ATTTAAACGCACGTTTGATA
Locus tag: VP2209
Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: VP2208
Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
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fadI
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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fadJ
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Position: -348
Score: 5.2 Sequence: ATTCATACACCTGTTTTAAA
Locus tag: VP0583
Name: mdh Funciton: Malate synthase (EC 2.3.3.9) |
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mdh
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Malate synthase (EC 2.3.3.9)
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Position: -32
Score: 5.5 Sequence: TTTCAAACAGTTGTTTAATA
Locus tag: VP1229
Name: psrA Funciton: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
Locus tag: VP1230
Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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psrA
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Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
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fadE
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -112
Score: 5.6 Sequence: ATTTAAACAAGTGTTTGAGA
Locus tag: VP0870
Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |