Collection of regulogs in Desulfovibrionales taxonomic group

General statistics
Genomes	10
TF regulogs	101
TF regulons	428
TF binding sites	2086
RNA regulogs	9
RNA regulons	43
RNA sites	72

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
	TF		RNA		Total
Genomes	Regulons	Sites	Regulons	Sites	Regulons	Sites
Desulfohalobium retbaense DSM 5692	35	104	3	5	38	109
Desulfomicrobium baculatum DSM 4028	47	205	4	7	51	212
Desulfovibrio desulfuricans G20	55	326	6	10	61	336
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	27	158	6	11	33	169
Desulfovibrio magneticus RS-1	44	208	5	7	49	215
Desulfovibrio piger ATCC 29098	23	101	4	8	27	109
Desulfovibrio salexigens DSM 2638	52	276	4	7	56	283
Desulfovibrio vulgaris Hildenborough	71	348	6	10	77	358
Desulfovibrio vulgaris str. Miyazaki F	63	308	5	7	68	315
Lawsonia intracellularis PHE/MN1-00	11	52	0	0	11	52

Genomic distribution of regulons
Family	Type	Regulator											Function
ArsR	TF	ArsR	2 ArsR Desulfovibrio vulgaris Hildenborough	1 ArsR Desulfovibrio vulgaris str. Miyazaki F	3 ArsR Desulfovibrio desulfuricans G20		2 ArsR Desulfovibrio piger ATCC 29098	3 ArsR Desulfovibrio salexigens DSM 2638	3 ArsR Desulfovibrio magneticus RS-1		2 ArsR Desulfomicrobium baculatum DSM 4028	2 ArsR Desulfohalobium retbaense DSM 5692	Arsenic resistance
	TF	ArsR2			1 ArsR2 Desulfovibrio desulfuricans G20			1 ArsR2 Desulfovibrio salexigens DSM 2638	1 ArsR2 Desulfovibrio magneticus RS-1		1 ArsR2 Desulfomicrobium baculatum DSM 4028		Arsenic resistance
	TF	ArsR3		2 ArsR3 Desulfovibrio vulgaris str. Miyazaki F		2 ArsR3 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774							Arsenic resistance
	TF	DESPIG_02495					1 DESPIG_02495 Desulfovibrio piger ATCC 29098
	TF	DMR_39480							2 DMR_39480 Desulfovibrio magneticus RS-1
	TF	DMR_45340							2 DMR_45340 Desulfovibrio magneticus RS-1
	TF	Dbac_0377									1 Dbac_0377 Desulfomicrobium baculatum DSM 4028
	TF	Dbac_1936									1 Dbac_1936 Desulfomicrobium baculatum DSM 4028
	TF	Ddes_1264				1 Ddes_1264 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774							Heavy metal resistance
	TF	SahR	4 SahR Desulfovibrio vulgaris Hildenborough	3 SahR Desulfovibrio vulgaris str. Miyazaki F	5 SahR Desulfovibrio desulfuricans G20	3 SahR Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	3 SahR Desulfovibrio piger ATCC 29098	3 SahR Desulfovibrio salexigens DSM 2638	1 SahR Desulfovibrio magneticus RS-1		1 SahR Desulfomicrobium baculatum DSM 4028	2 SahR Desulfohalobium retbaense DSM 5692	Methionine metabolism
	TF	SmtB	1 SmtB Desulfovibrio vulgaris Hildenborough	1 SmtB Desulfovibrio vulgaris str. Miyazaki F	1 SmtB Desulfovibrio desulfuricans G20			1 SmtB Desulfovibrio salexigens DSM 2638			1 SmtB Desulfomicrobium baculatum DSM 4028	1 SmtB Desulfohalobium retbaense DSM 5692	Heavy metal resistance
BirA	TF	BirA	2 BirA Desulfovibrio vulgaris Hildenborough	2 BirA Desulfovibrio vulgaris str. Miyazaki F	2 BirA Desulfovibrio desulfuricans G20								Biotin biosynthesis
CRP	TF	CooA	1 CooA Desulfovibrio vulgaris Hildenborough	1 CooA Desulfovibrio vulgaris str. Miyazaki F	1 CooA Desulfovibrio desulfuricans G20	1 CooA Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774		1 CooA Desulfovibrio salexigens DSM 2638	1 CooA Desulfovibrio magneticus RS-1		1 CooA Desulfomicrobium baculatum DSM 4028	1 CooA Desulfohalobium retbaense DSM 5692	Carbon monoxide utilization
	TF	DVU0379	1 DVU0379 Desulfovibrio vulgaris Hildenborough		1 DVU0379 Desulfovibrio desulfuricans G20			1 DVU0379 Desulfovibrio salexigens DSM 2638					Uranium reduction
	TF	DVU3111	3 DVU3111 Desulfovibrio vulgaris Hildenborough										Alkaline stress response
	TF	Dde_1200			1 Dde_1200 Desulfovibrio desulfuricans G20			1 Dde_1200 Desulfovibrio salexigens DSM 2638
	TF	Ddes_0528, DESPIG_03026				2 Ddes_0528, DESPIG_03026 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1 Ddes_0528, DESPIG_03026 Desulfovibrio piger ATCC 29098						Nitrosative stress response
	TF	Ddes_1411/Ddes_2092				6 Ddes_1411/Ddes_2092 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
	TF	Ddes_1827				1 Ddes_1827 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774							Nitrosative stress response
	TF	Desal_0494						2 Desal_0494 Desulfovibrio salexigens DSM 2638
	TF	Desal_2066						2 Desal_2066 Desulfovibrio salexigens DSM 2638	2 Desal_2066 Desulfovibrio magneticus RS-1			2 Desal_2066 Desulfohalobium retbaense DSM 5692
	TF	DvMF_1708		1 DvMF_1708 Desulfovibrio vulgaris str. Miyazaki F			1 DvMF_1708 Desulfovibrio piger ATCC 29098		1 DvMF_1708 Desulfovibrio magneticus RS-1
	TF	HcpR	3 HcpR Desulfovibrio vulgaris Hildenborough	2 HcpR Desulfovibrio vulgaris str. Miyazaki F	4 HcpR Desulfovibrio desulfuricans G20			4 HcpR Desulfovibrio salexigens DSM 2638	4 HcpR Desulfovibrio magneticus RS-1		4 HcpR Desulfomicrobium baculatum DSM 4028	3 HcpR Desulfohalobium retbaense DSM 5692	Nitrosative stress response
DeoR	TF	GlpR	1 GlpR Desulfovibrio vulgaris Hildenborough	1 GlpR Desulfovibrio vulgaris str. Miyazaki F	1 GlpR Desulfovibrio desulfuricans G20				1 GlpR Desulfovibrio magneticus RS-1				Glycerol utilization
FUR	TF	Fur	13 Fur Desulfovibrio vulgaris Hildenborough	10 Fur Desulfovibrio vulgaris str. Miyazaki F	21 Fur Desulfovibrio desulfuricans G20	11 Fur Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	11 Fur Desulfovibrio piger ATCC 29098	20 Fur Desulfovibrio salexigens DSM 2638	12 Fur Desulfovibrio magneticus RS-1	5 Fur Lawsonia intracellularis PHE/MN1-00	1 Fur Desulfomicrobium baculatum DSM 4028	1 Fur Desulfohalobium retbaense DSM 5692	Iron homeostasis
	TF	PerR	4 PerR Desulfovibrio vulgaris Hildenborough	3 PerR Desulfovibrio vulgaris str. Miyazaki F	4 PerR Desulfovibrio desulfuricans G20	4 PerR Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	4 PerR Desulfovibrio piger ATCC 29098	3 PerR Desulfovibrio salexigens DSM 2638			4 PerR Desulfomicrobium baculatum DSM 4028	3 PerR Desulfohalobium retbaense DSM 5692	Peroxide stress response
	TF	Zur	1 Zur Desulfovibrio vulgaris Hildenborough	1 Zur Desulfovibrio vulgaris str. Miyazaki F	1 Zur Desulfovibrio desulfuricans G20			1 Zur Desulfovibrio salexigens DSM 2638	1 Zur Desulfovibrio magneticus RS-1		1 Zur Desulfomicrobium baculatum DSM 4028		Zinc homeostasis
Fis	TF	DVU0110	1 DVU0110 Desulfovibrio vulgaris Hildenborough	1 DVU0110 Desulfovibrio vulgaris str. Miyazaki F			1 DVU0110 Desulfovibrio piger ATCC 29098		2 DVU0110 Desulfovibrio magneticus RS-1
	TF	DVU0118	1 DVU0118 Desulfovibrio vulgaris Hildenborough	1 DVU0118 Desulfovibrio vulgaris str. Miyazaki F
	TF	DVU0151	1 DVU0151 Desulfovibrio vulgaris Hildenborough	1 DVU0151 Desulfovibrio vulgaris str. Miyazaki F		1 DVU0151 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1 DVU0151 Desulfovibrio piger ATCC 29098		1 DVU0151 Desulfovibrio magneticus RS-1				Metabolite transport
	TF	DVU0539/DVU0946	4 DVU0539/DVU0946 Desulfovibrio vulgaris Hildenborough	4 DVU0539/DVU0946 Desulfovibrio vulgaris str. Miyazaki F	1 DVU0539/DVU0946 Desulfovibrio desulfuricans G20			1 DVU0539/DVU0946 Desulfovibrio salexigens DSM 2638	3 DVU0539/DVU0946 Desulfovibrio magneticus RS-1		1 DVU0539/DVU0946 Desulfomicrobium baculatum DSM 4028	4 DVU0539/DVU0946 Desulfohalobium retbaense DSM 5692
	TF	DVU0569	1 DVU0569 Desulfovibrio vulgaris Hildenborough	1 DVU0569 Desulfovibrio vulgaris str. Miyazaki F	1 DVU0569 Desulfovibrio desulfuricans G20			1 DVU0569 Desulfovibrio salexigens DSM 2638	1 DVU0569 Desulfovibrio magneticus RS-1		1 DVU0569 Desulfomicrobium baculatum DSM 4028	1 DVU0569 Desulfohalobium retbaense DSM 5692	Amino acid metabolism
	TF	DVU0619	1 DVU0619 Desulfovibrio vulgaris Hildenborough	1 DVU0619 Desulfovibrio vulgaris str. Miyazaki F				1 DVU0619 Desulfovibrio salexigens DSM 2638
	TF	DVU0621	2 DVU0621 Desulfovibrio vulgaris Hildenborough	2 DVU0621 Desulfovibrio vulgaris str. Miyazaki F	1 DVU0621 Desulfovibrio desulfuricans G20	2 DVU0621 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1 DVU0621 Desulfovibrio piger ATCC 29098				1 DVU0621 Desulfomicrobium baculatum DSM 4028		Nitrate and nitrite respiration
	TF	DVU0744	1 DVU0744 Desulfovibrio vulgaris Hildenborough	1 DVU0744 Desulfovibrio vulgaris str. Miyazaki F	1 DVU0744 Desulfovibrio desulfuricans G20
	TF	DVU0804	1 DVU0804 Desulfovibrio vulgaris Hildenborough	1 DVU0804 Desulfovibrio vulgaris str. Miyazaki F	1 DVU0804 Desulfovibrio desulfuricans G20
	TF	DVU1063	11 DVU1063 Desulfovibrio vulgaris Hildenborough	10 DVU1063 Desulfovibrio vulgaris str. Miyazaki F	8 DVU1063 Desulfovibrio desulfuricans G20	8 DVU1063 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774		9 DVU1063 Desulfovibrio salexigens DSM 2638	5 DVU1063 Desulfovibrio magneticus RS-1	5 DVU1063 Lawsonia intracellularis PHE/MN1-00	4 DVU1063 Desulfomicrobium baculatum DSM 4028	1 DVU1063 Desulfohalobium retbaense DSM 5692	Motility
	TF	DVU1156	1 DVU1156 Desulfovibrio vulgaris Hildenborough
	TF	DVU1419	2 DVU1419 Desulfovibrio vulgaris Hildenborough	1 DVU1419 Desulfovibrio vulgaris str. Miyazaki F	1 DVU1419 Desulfovibrio desulfuricans G20			2 DVU1419 Desulfovibrio salexigens DSM 2638			1 DVU1419 Desulfomicrobium baculatum DSM 4028	1 DVU1419 Desulfohalobium retbaense DSM 5692
	TF	DVU2106	2 DVU2106 Desulfovibrio vulgaris Hildenborough		1 DVU2106 Desulfovibrio desulfuricans G20			2 DVU2106 Desulfovibrio salexigens DSM 2638	1 DVU2106 Desulfovibrio magneticus RS-1			1 DVU2106 Desulfohalobium retbaense DSM 5692	Nitrogen fixation
	TF	DVU2114	3 DVU2114 Desulfovibrio vulgaris Hildenborough	2 DVU2114 Desulfovibrio vulgaris str. Miyazaki F	2 DVU2114 Desulfovibrio desulfuricans G20				4 DVU2114 Desulfovibrio magneticus RS-1			1 DVU2114 Desulfohalobium retbaense DSM 5692
	TF	DVU2275	1 DVU2275 Desulfovibrio vulgaris Hildenborough				1 DVU2275 Desulfovibrio piger ATCC 29098	1 DVU2275 Desulfovibrio salexigens DSM 2638					Pyruvate metabolism
	TF	DVU2359	1 DVU2359 Desulfovibrio vulgaris Hildenborough	1 DVU2359 Desulfovibrio vulgaris str. Miyazaki F	1 DVU2359 Desulfovibrio desulfuricans G20
	TF	DVU2394	1 DVU2394 Desulfovibrio vulgaris Hildenborough	1 DVU2394 Desulfovibrio vulgaris str. Miyazaki F	1 DVU2394 Desulfovibrio desulfuricans G20			1 DVU2394 Desulfovibrio salexigens DSM 2638	2 DVU2394 Desulfovibrio magneticus RS-1		3 DVU2394 Desulfomicrobium baculatum DSM 4028	1 DVU2394 Desulfohalobium retbaense DSM 5692	Energy metabolism
	TF	DVU2827	2 DVU2827 Desulfovibrio vulgaris Hildenborough		2 DVU2827 Desulfovibrio desulfuricans G20	2 DVU2827 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	2 DVU2827 Desulfovibrio piger ATCC 29098				2 DVU2827 Desulfomicrobium baculatum DSM 4028		Pyruvate metabolism
	TF	DVU2894	3 DVU2894 Desulfovibrio vulgaris Hildenborough	2 DVU2894 Desulfovibrio vulgaris str. Miyazaki F	4 DVU2894 Desulfovibrio desulfuricans G20	5 DVU2894 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	2 DVU2894 Desulfovibrio piger ATCC 29098	2 DVU2894 Desulfovibrio salexigens DSM 2638	2 DVU2894 Desulfovibrio magneticus RS-1	3 DVU2894 Lawsonia intracellularis PHE/MN1-00	2 DVU2894 Desulfomicrobium baculatum DSM 4028	1 DVU2894 Desulfohalobium retbaense DSM 5692	Motility
	TF	DVU2934	1 DVU2934 Desulfovibrio vulgaris Hildenborough	1 DVU2934 Desulfovibrio vulgaris str. Miyazaki F	1 DVU2934 Desulfovibrio desulfuricans G20			1 DVU2934 Desulfovibrio salexigens DSM 2638		1 DVU2934 Lawsonia intracellularis PHE/MN1-00	1 DVU2934 Desulfomicrobium baculatum DSM 4028	1 DVU2934 Desulfohalobium retbaense DSM 5692
	TF	DVU2956	1 DVU2956 Desulfovibrio vulgaris Hildenborough	2 DVU2956 Desulfovibrio vulgaris str. Miyazaki F					1 DVU2956 Desulfovibrio magneticus RS-1		1 DVU2956 Desulfomicrobium baculatum DSM 4028
	TF	DVU3023	3 DVU3023 Desulfovibrio vulgaris Hildenborough	2 DVU3023 Desulfovibrio vulgaris str. Miyazaki F	1 DVU3023 Desulfovibrio desulfuricans G20				1 DVU3023 Desulfovibrio magneticus RS-1		1 DVU3023 Desulfomicrobium baculatum DSM 4028	1 DVU3023 Desulfohalobium retbaense DSM 5692	Lactate utilization
	TF	DVU3305	2 DVU3305 Desulfovibrio vulgaris Hildenborough	2 DVU3305 Desulfovibrio vulgaris str. Miyazaki F				1 DVU3305 Desulfovibrio salexigens DSM 2638	2 DVU3305 Desulfovibrio magneticus RS-1		2 DVU3305 Desulfomicrobium baculatum DSM 4028	1 DVU3305 Desulfohalobium retbaense DSM 5692
	TF	DVUA0057	7 DVUA0057 Desulfovibrio vulgaris Hildenborough	4 DVUA0057 Desulfovibrio vulgaris str. Miyazaki F	4 DVUA0057 Desulfovibrio desulfuricans G20			1 DVUA0057 Desulfovibrio salexigens DSM 2638			4 DVUA0057 Desulfomicrobium baculatum DSM 4028		Biofilm formation
	TF	DVUA0100	3 DVUA0100 Desulfovibrio vulgaris Hildenborough	3 DVUA0100 Desulfovibrio vulgaris str. Miyazaki F			3 DVUA0100 Desulfovibrio piger ATCC 29098			1 DVUA0100 Lawsonia intracellularis PHE/MN1-00
	TF	DVUA0143	2 DVUA0143 Desulfovibrio vulgaris Hildenborough	2 DVUA0143 Desulfovibrio vulgaris str. Miyazaki F				2 DVUA0143 Desulfovibrio salexigens DSM 2638	3 DVUA0143 Desulfovibrio magneticus RS-1		3 DVUA0143 Desulfomicrobium baculatum DSM 4028		Nitrogen fixation
	TF	KdpR	1 KdpR Desulfovibrio vulgaris Hildenborough	1 KdpR Desulfovibrio vulgaris str. Miyazaki F									Potassium homeostasis
	TF	NifA-1	9 NifA-1 Desulfovibrio vulgaris Hildenborough	11 NifA-1 Desulfovibrio vulgaris str. Miyazaki F	9 NifA-1 Desulfovibrio desulfuricans G20			10 NifA-1 Desulfovibrio salexigens DSM 2638	2 NifA-1 Desulfovibrio magneticus RS-1		6 NifA-1 Desulfomicrobium baculatum DSM 4028	4 NifA-1 Desulfohalobium retbaense DSM 5692	Nitrogen assimilation
	TF	OhcR	1 OhcR Desulfovibrio vulgaris Hildenborough	1 OhcR Desulfovibrio vulgaris str. Miyazaki F	1 OhcR Desulfovibrio desulfuricans G20			1 OhcR Desulfovibrio salexigens DSM 2638	1 OhcR Desulfovibrio magneticus RS-1			1 OhcR Desulfohalobium retbaense DSM 5692	Energy metabolism
	TF	PspF	1 PspF Desulfovibrio vulgaris Hildenborough	1 PspF Desulfovibrio vulgaris str. Miyazaki F	1 PspF Desulfovibrio desulfuricans G20				1 PspF Desulfovibrio magneticus RS-1		1 PspF Desulfomicrobium baculatum DSM 4028		Phage shock response
	TF	ZraR	2 ZraR Desulfovibrio vulgaris Hildenborough	2 ZraR Desulfovibrio vulgaris str. Miyazaki F	3 ZraR Desulfovibrio desulfuricans G20	1 ZraR Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1 ZraR Desulfovibrio piger ATCC 29098		1 ZraR Desulfovibrio magneticus RS-1	2 ZraR Lawsonia intracellularis PHE/MN1-00			Zinc homeostasis
GntR/MocR	TF	DVU0030	2 DVU0030 Desulfovibrio vulgaris Hildenborough	2 DVU0030 Desulfovibrio vulgaris str. Miyazaki F	2 DVU0030 Desulfovibrio desulfuricans G20			2 DVU0030 Desulfovibrio salexigens DSM 2638	1 DVU0030 Desulfovibrio magneticus RS-1		2 DVU0030 Desulfomicrobium baculatum DSM 4028	2 DVU0030 Desulfohalobium retbaense DSM 5692	Amino acid transport
	TF	DVU2086	1 DVU2086 Desulfovibrio vulgaris Hildenborough
	TF	DVU2953	1 DVU2953 Desulfovibrio vulgaris Hildenborough								1 DVU2953 Desulfomicrobium baculatum DSM 4028		Metabolite transport
	TF	PdxQ		1 PdxQ Desulfovibrio vulgaris str. Miyazaki F		1 PdxQ Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774							Pyridoxine/pyridoxal homeostasis
GntR/Others	TF	DMR_17410							2 DMR_17410 Desulfovibrio magneticus RS-1				Metabolite transport
	TF	DVU2644	1 DVU2644 Desulfovibrio vulgaris Hildenborough		1 DVU2644 Desulfovibrio desulfuricans G20	1 DVU2644 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	2 DVU2644 Desulfovibrio piger ATCC 29098	2 DVU2644 Desulfovibrio salexigens DSM 2638					Amino acid metabolism
	TF	DVU2802	1 DVU2802 Desulfovibrio vulgaris Hildenborough		1 DVU2802 Desulfovibrio desulfuricans G20	1 DVU2802 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774		1 DVU2802 Desulfovibrio salexigens DSM 2638			1 DVU2802 Desulfomicrobium baculatum DSM 4028	1 DVU2802 Desulfohalobium retbaense DSM 5692
	TF	Dbac_2821									1 Dbac_2821 Desulfomicrobium baculatum DSM 4028
	TF	Desal_0038						1 Desal_0038 Desulfovibrio salexigens DSM 2638					Carbohydrate metabolism
	TF	Desal_2919						2 Desal_2919 Desulfovibrio salexigens DSM 2638					Hypothetical ABC transporter
	TF	Desal_3745						2 Desal_3745 Desulfovibrio salexigens DSM 2638					Metabolite transport
	TF	DvMF_1479		1 DvMF_1479 Desulfovibrio vulgaris str. Miyazaki F									Amino acid transport
	TF	DvMF_1994		3 DvMF_1994 Desulfovibrio vulgaris str. Miyazaki F		1 DvMF_1994 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774							Carbohydrate metabolism
	TF	DvMF_2930		2 DvMF_2930 Desulfovibrio vulgaris str. Miyazaki F
	TF	LldR	1 LldR Desulfovibrio vulgaris Hildenborough	1 LldR Desulfovibrio vulgaris str. Miyazaki F	1 LldR Desulfovibrio desulfuricans G20			1 LldR Desulfovibrio salexigens DSM 2638			3 LldR Desulfomicrobium baculatum DSM 4028	1 LldR Desulfohalobium retbaense DSM 5692	Lactate utilization
	TF	PhnF			2 PhnF Desulfovibrio desulfuricans G20						3 PhnF Desulfomicrobium baculatum DSM 4028		Phosphonate utilization
HrcA	TF	HrcA	1 HrcA Desulfovibrio vulgaris Hildenborough	1 HrcA Desulfovibrio vulgaris str. Miyazaki F	1 HrcA Desulfovibrio desulfuricans G20				2 HrcA Desulfovibrio magneticus RS-1		1 HrcA Desulfomicrobium baculatum DSM 4028	1 HrcA Desulfohalobium retbaense DSM 5692	Heat shock response
HxlR	TF	DVU2423	2 DVU2423 Desulfovibrio vulgaris Hildenborough	2 DVU2423 Desulfovibrio vulgaris str. Miyazaki F					2 DVU2423 Desulfovibrio magneticus RS-1		2 DVU2423 Desulfomicrobium baculatum DSM 4028	1 DVU2423 Desulfohalobium retbaense DSM 5692	Nitrogen metabolism
LacI	TF	GalR			2 GalR Desulfovibrio desulfuricans G20			2 GalR Desulfovibrio salexigens DSM 2638					Galactose utilization
	TF	RbsR						1 RbsR Desulfovibrio salexigens DSM 2638					Ribose utilization
LexA	TF	LexA			4 LexA Desulfovibrio desulfuricans G20								SOS response
LysR	TF	DVU0309	2 DVU0309 Desulfovibrio vulgaris Hildenborough		2 DVU0309 Desulfovibrio desulfuricans G20			2 DVU0309 Desulfovibrio salexigens DSM 2638				2 DVU0309 Desulfohalobium retbaense DSM 5692
	TF	HrsM	2 HrsM Desulfovibrio vulgaris Hildenborough	2 HrsM Desulfovibrio vulgaris str. Miyazaki F	1 HrsM Desulfovibrio desulfuricans G20			3 HrsM Desulfovibrio salexigens DSM 2638	1 HrsM Desulfovibrio magneticus RS-1		3 HrsM Desulfomicrobium baculatum DSM 4028	1 HrsM Desulfohalobium retbaense DSM 5692
MarR	TF	DVU0525	1 DVU0525 Desulfovibrio vulgaris Hildenborough	1 DVU0525 Desulfovibrio vulgaris str. Miyazaki F				1 DVU0525 Desulfovibrio salexigens DSM 2638					Multidrug resistance
MerR	TF	CadR-PbrR					1 CadR-PbrR Desulfovibrio piger ATCC 29098		1 CadR-PbrR Desulfovibrio magneticus RS-1				Lead resistance; Cadmium resistance
ModE	TF	ModE2	4 ModE2 Desulfovibrio vulgaris Hildenborough	6 ModE2 Desulfovibrio vulgaris str. Miyazaki F	7 ModE2 Desulfovibrio desulfuricans G20			8 ModE2 Desulfovibrio salexigens DSM 2638	6 ModE2 Desulfovibrio magneticus RS-1		6 ModE2 Desulfomicrobium baculatum DSM 4028	3 ModE2 Desulfohalobium retbaense DSM 5692	Molybdopterin biosynthesis; Molybdenum homeostasis
NikR	TF	NikR	2 NikR Desulfovibrio vulgaris Hildenborough	3 NikR Desulfovibrio vulgaris str. Miyazaki F	3 NikR Desulfovibrio desulfuricans G20	2 NikR Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1 NikR Desulfovibrio piger ATCC 29098	1 NikR Desulfovibrio salexigens DSM 2638		1 NikR Lawsonia intracellularis PHE/MN1-00	1 NikR Desulfomicrobium baculatum DSM 4028		Nickel homeostasis
OmpR	TF	PhoB	8 PhoB Desulfovibrio vulgaris Hildenborough	8 PhoB Desulfovibrio vulgaris str. Miyazaki F	10 PhoB Desulfovibrio desulfuricans G20	2 PhoB Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	3 PhoB Desulfovibrio piger ATCC 29098	8 PhoB Desulfovibrio salexigens DSM 2638	8 PhoB Desulfovibrio magneticus RS-1		9 PhoB Desulfomicrobium baculatum DSM 4028	4 PhoB Desulfohalobium retbaense DSM 5692	Phosphate metabolism
Rex	TF	Rex	14 Rex Desulfovibrio vulgaris Hildenborough	11 Rex Desulfovibrio vulgaris str. Miyazaki F	18 Rex Desulfovibrio desulfuricans G20	8 Rex Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	6 Rex Desulfovibrio piger ATCC 29098	12 Rex Desulfovibrio salexigens DSM 2638	9 Rex Desulfovibrio magneticus RS-1	1 Rex Lawsonia intracellularis PHE/MN1-00	9 Rex Desulfomicrobium baculatum DSM 4028	10 Rex Desulfohalobium retbaense DSM 5692	Energy metabolism
Rrf2	TF	DVU1964/DVU1967	1 DVU1964/DVU1967 Desulfovibrio vulgaris Hildenborough	1 DVU1964/DVU1967 Desulfovibrio vulgaris str. Miyazaki F	1 DVU1964/DVU1967 Desulfovibrio desulfuricans G20	2 DVU1964/DVU1967 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774		2 DVU1964/DVU1967 Desulfovibrio salexigens DSM 2638			1 DVU1964/DVU1967 Desulfomicrobium baculatum DSM 4028
	TF	HmcR	1 HmcR Desulfovibrio vulgaris Hildenborough	1 HmcR Desulfovibrio vulgaris str. Miyazaki F	1 HmcR Desulfovibrio desulfuricans G20			1 HmcR Desulfovibrio salexigens DSM 2638			1 HmcR Desulfomicrobium baculatum DSM 4028	1 HmcR Desulfohalobium retbaense DSM 5692	Energy metabolism
	TF	TmcR	1 TmcR Desulfovibrio vulgaris Hildenborough	1 TmcR Desulfovibrio vulgaris str. Miyazaki F	1 TmcR Desulfovibrio desulfuricans G20								Energy metabolism
Sigma54	TF	RpoN	81 RpoN Desulfovibrio vulgaris Hildenborough	73 RpoN Desulfovibrio vulgaris str. Miyazaki F	66 RpoN Desulfovibrio desulfuricans G20	45 RpoN Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	18 RpoN Desulfovibrio piger ATCC 29098	53 RpoN Desulfovibrio salexigens DSM 2638	45 RpoN Desulfovibrio magneticus RS-1	19 RpoN Lawsonia intracellularis PHE/MN1-00	57 RpoN Desulfomicrobium baculatum DSM 4028	15 RpoN Desulfohalobium retbaense DSM 5692	Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Sigma70	TF	FliA	10 FliA Desulfovibrio vulgaris Hildenborough	11 FliA Desulfovibrio vulgaris str. Miyazaki F	9 FliA Desulfovibrio desulfuricans G20	6 FliA Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774		5 FliA Desulfovibrio salexigens DSM 2638	9 FliA Desulfovibrio magneticus RS-1	3 FliA Lawsonia intracellularis PHE/MN1-00	5 FliA Desulfomicrobium baculatum DSM 4028	3 FliA Desulfohalobium retbaense DSM 5692	Motility
	TF	RpoH	4 RpoH Desulfovibrio vulgaris Hildenborough		3 RpoH Desulfovibrio desulfuricans G20	2 RpoH Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	2 RpoH Desulfovibrio piger ATCC 29098	1 RpoH Desulfovibrio salexigens DSM 2638	3 RpoH Desulfovibrio magneticus RS-1	1 RpoH Lawsonia intracellularis PHE/MN1-00		2 RpoH Desulfohalobium retbaense DSM 5692	Heat shock response
TetR	TF	DVU0057	1 DVU0057 Desulfovibrio vulgaris Hildenborough	1 DVU0057 Desulfovibrio vulgaris str. Miyazaki F				1 DVU0057 Desulfovibrio salexigens DSM 2638
	TF	DVU0436	1 DVU0436 Desulfovibrio vulgaris Hildenborough	1 DVU0436 Desulfovibrio vulgaris str. Miyazaki F
	TF	DVU1760	2 DVU1760 Desulfovibrio vulgaris Hildenborough
	TF	DVU2819	1 DVU2819 Desulfovibrio vulgaris Hildenborough										Metabolite transport
	TF	Dbac_0104						1 Dbac_0104 Desulfovibrio salexigens DSM 2638	2 Dbac_0104 Desulfovibrio magneticus RS-1		2 Dbac_0104 Desulfomicrobium baculatum DSM 4028		Metabolite transport
TrmB	TF	LysX	3 LysX Desulfovibrio vulgaris Hildenborough	3 LysX Desulfovibrio vulgaris str. Miyazaki F	5 LysX Desulfovibrio desulfuricans G20								Lysine biosynthesis
TunR	TF	TunR	3 TunR Desulfovibrio vulgaris Hildenborough	9 TunR Desulfovibrio vulgaris str. Miyazaki F	3 TunR Desulfovibrio desulfuricans G20	4 TunR Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1 TunR Desulfovibrio piger ATCC 29098	1 TunR Desulfovibrio salexigens DSM 2638	7 TunR Desulfovibrio magneticus RS-1		3 TunR Desulfomicrobium baculatum DSM 4028		Tungsten homeostasis; Molybdenum homeostasis
	TF	TunR2	2 TunR2 Desulfovibrio vulgaris Hildenborough	2 TunR2 Desulfovibrio vulgaris str. Miyazaki F					5 TunR2 Desulfovibrio magneticus RS-1		1 TunR2 Desulfomicrobium baculatum DSM 4028		Molybdenum homeostasis; Metabolite transport
RF00050	RNA	FMN	1 FMN Desulfovibrio vulgaris Hildenborough	1 FMN Desulfovibrio vulgaris str. Miyazaki F	1 FMN Desulfovibrio desulfuricans G20	1 FMN Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1 FMN Desulfovibrio piger ATCC 29098	1 FMN Desulfovibrio salexigens DSM 2638	1 FMN Desulfovibrio magneticus RS-1		1 FMN Desulfomicrobium baculatum DSM 4028		Riboflavin biosynthesis
RF00059	RNA	TPP	1 TPP Desulfovibrio vulgaris Hildenborough	1 TPP Desulfovibrio vulgaris str. Miyazaki F	1 TPP Desulfovibrio desulfuricans G20	2 TPP Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	2 TPP Desulfovibrio piger ATCC 29098	1 TPP Desulfovibrio salexigens DSM 2638			2 TPP Desulfomicrobium baculatum DSM 4028	2 TPP Desulfohalobium retbaense DSM 5692	Thiamine biosynthesis
RF00080	RNA	yybP-ykoY	1 yybP-ykoY Desulfovibrio vulgaris Hildenborough	1 yybP-ykoY Desulfovibrio vulgaris str. Miyazaki F		1 yybP-ykoY Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1 yybP-ykoY Desulfovibrio piger ATCC 29098		1 yybP-ykoY Desulfovibrio magneticus RS-1		2 yybP-ykoY Desulfomicrobium baculatum DSM 4028
RF00162	RNA	SAM	1 SAM Desulfovibrio vulgaris Hildenborough	1 SAM Desulfovibrio vulgaris str. Miyazaki F	1 SAM Desulfovibrio desulfuricans G20			1 SAM Desulfovibrio salexigens DSM 2638					Methionine biosynthesis
RF00174	RNA	Cobalamin	3 Cobalamin Desulfovibrio vulgaris Hildenborough	2 Cobalamin Desulfovibrio vulgaris str. Miyazaki F	3 Cobalamin Desulfovibrio desulfuricans G20	3 Cobalamin Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	3 Cobalamin Desulfovibrio piger ATCC 29098	4 Cobalamin Desulfovibrio salexigens DSM 2638	2 Cobalamin Desulfovibrio magneticus RS-1		2 Cobalamin Desulfomicrobium baculatum DSM 4028	1 Cobalamin Desulfohalobium retbaense DSM 5692	Cobalamin biosynthesis
RF00379	RNA	ydaO-yuaA							1 ydaO-yuaA Desulfovibrio magneticus RS-1				Cell wall metabolism; Osmotic stress response
RF00504	RNA	Glycine	1 Glycine Desulfovibrio vulgaris Hildenborough		1 Glycine Desulfovibrio desulfuricans G20	2 Glycine Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774							Glycine metabolism
RF01051	RNA	GEMM_RNA_motif			1 GEMM_RNA_motif Desulfovibrio desulfuricans G20				2 GEMM_RNA_motif Desulfovibrio magneticus RS-1			2 GEMM_RNA_motif Desulfohalobium retbaense DSM 5692	Second messenger response
RF01068	RNA	mini-ykkC				1 mini-ykkC Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774							Multidrug resistance

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Collection of regulogs in Desulfovibrionales taxonomic group

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --