Regulog ArsR - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | ArsR |
| Regulation mode: | repressor |
| Biological process: | Arsenic resistance |
| Effector: | Arsenate |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - ArsR
- By effector - Arsenate
- By pathway - Arsenic resistance
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 3 | 2 |
| Desulfovibrio vulgaris str. Miyazaki F | 1 | 1 |
| Desulfovibrio desulfuricans G20 | 5 | 3 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio piger ATCC 29098 | 2 | 2 |
| Desulfovibrio salexigens DSM 2638 | 4 | 3 |
| Desulfovibrio magneticus RS-1 | 7 | 3 |
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 4 | 2 |
| Desulfohalobium retbaense DSM 5692 | 3 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| arsC |
*
Desulfovibrio vulgaris Hildenborough Site: position = -142 score = 5.00011 sequence = ACTTGATTATTTGGCAAAAT Site: position = -134 score = 5.98112 sequence = ATTTGGCAAAATAGACAAAT Gene: DVU1646: Arsenate reductase (EC 1.20.4.1) |
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Gene: Dde_2820: Arsenate reductase (EC 1.20.4.1) |
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Desulfovibrio salexigens DSM 2638 Site: position = -38 score = 4.56967 sequence = GTTTTCCTCTTTGGCAAAAT Site: position = -30 score = 5.25186 sequence = CTTTGGCAAAATATCCAAAC Gene: Desal_2313: Arsenate reductase (EC 1.20.4.1) |
Gene: DMR_01870: Arsenate reductase (EC 1.20.4.1) |
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Gene: Dbac_1911: Arsenate reductase (EC 1.20.4.1) |
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Arsenate reductase (EC 1.20.4.1) |
| CRON 2. | |||||||||||
| arsR |
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Desulfovibrio vulgaris Hildenborough Site: position = -44 score = 5.98112 sequence = ATTTGTCTATTTTGCCAAAT Site: position = -36 score = 5.00011 sequence = ATTTTGCCAAATAATCAAGT Gene: DVU1645: ArsR family transcriptional regulator |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -12 score = 5.01743 sequence = ATTTGGCGAAACATGCAAAT Gene: DvMF_2281: ArsR family transcriptional regulator |
*2
Desulfovibrio desulfuricans G20 Site: position = -88 score = 5.73505 sequence = ATTTGGCTGAATCGCCAAAT Site: position = -39 score = 5.69525 sequence = ATTTGGCGAAAAAGCCAAAT Gene: Dde_3721: ArsR family transcriptional regulator Site: position = -11 score = 5.14439 sequence = GCTTGGCCTAATTGCCAAAT Gene: Dde_2776: ArsR family transcriptional regulator |
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Desulfovibrio piger ATCC 29098 Site: position = -31 score = 5.6171 sequence = ATTTTGCCAAATGACCAAAT Gene: DESPIG_02964: ArsR family transcriptional regulator |
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Desulfovibrio salexigens DSM 2638 Site: position = -42 score = 5.35766 sequence = ATTTTTATATTTTGCCAAAC Site: position = -34 score = 4.77506 sequence = ATTTTGCCAAACAGGAAAGT Gene: Desal_3295: ArsR family transcriptional regulator |
*2
Desulfovibrio magneticus RS-1 Gene: DMR_20150: ArsR family transcriptional regulator Site: position = -39 score = 4.55387 sequence = ATTTTGCCAAATAGAAAACG Site: position = -47 score = 5.7459 sequence = TTTTGGCTATTTTGCCAAAT Gene: DMR_37390: ArsR family transcriptional regulator |
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*2
Desulfomicrobium baculatum DSM 4028 Site: position = -160 score = 5.0289 sequence = ATTTGCACAAATGACCAAAT Site: position = -38 score = 5.13742 sequence = GCTTGGCAATATTGCCAAGT Gene: Dbac_1906: ArsR family transcriptional regulator Site: position = -32 score = 5.0289 sequence = ATTTGGTCATTTGTGCAAAT Site: position = -154 score = 5.13742 sequence = ACTTGGCAATATTGCCAAGC Gene: Dbac_1905: ArsR family transcriptional regulator |
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Desulfohalobium retbaense DSM 5692 Site: position = -12 score = 4.18983 sequence = ACTTTGCCAAGTATGCAAAC Site: position = -20 score = 5.04426 sequence = ATTTGGTTACTTTGCCAAGT Gene: Dret_1784: ArsR family transcriptional regulator |
ArsR family transcriptional regulator |
| Dbac_1904 |
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Gene: Dbac_1904: permease |
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permease |
| Dbac_1903 |
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Gene: Dbac_1903: redox-active disulfide protein 2 |
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redox-active disulfide protein 2 |
| Desal_3293 |
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Gene: Desal_3293: hypothetical protein |
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Desulfovibrio magneticus RS-1 Site: position = -76 score = 5.4227 sequence = ATTTGGCAAAACATACAAAT Site: position = -84 score = 5.66216 sequence = ATTTTGCTATTTGGCAAAAC Gene: DMR_37400: hypothetical protein |
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hypothetical protein |
| Dret_1783 |
Gene: DVU1644: permease |
Gene: DvMF_2282: permease |
*2
Desulfovibrio desulfuricans G20 Gene: Dde_3722: permease Site: position = -31 score = 5.54095 sequence = ATTTGGCGAATCAGCCAAAC Gene: Dde_2777: permease |
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Desulfovibrio piger ATCC 29098 Site: position = -30 score = 5.1822 sequence = ATTTGGCAATTTTGCCAATA Site: position = -22 score = 4.48072 sequence = ATTTTGCCAATAAGGAATAT Gene: DESPIG_02962: permease |
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Desulfovibrio salexigens DSM 2638 Site: position = -39 score = 4.33632 sequence = AGTTTCGTATTTGGCAAAAT Site: position = -31 score = 4.85286 sequence = ATTTGGCAAAATATAAAGAC Gene: Desal_3294: permease |
*2
Desulfovibrio magneticus RS-1 Gene: DMR_37410: permease Site: position = -57 score = 5.27333 sequence = ATTTTGCCTTTTGACCAAAT Site: position = -49 score = 4.44721 sequence = TTTTGACCAAATAGCAAATC Gene: DMR_20130: permease |
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Desulfohalobium retbaense DSM 5692 Site: position = -49 score = 5.22424 sequence = ATTTGGCTTTTTGGGAAAAT Site: position = -42 score = 3.6874 sequence = TTTTTGGGAAAATAGAAAAT Gene: Dret_1783: permease |
permease |
| Dret_1782 |
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Gene: Dde_2778: redox-active disulfide protein 2 |
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Gene: DESPIG_02961: redox-active disulfide protein 2 |
Gene: Desal_2205: redox-active disulfide protein 2 |
2
Desulfovibrio magneticus RS-1 Gene: DMR_37420: redox-active disulfide protein 2 Gene: DMR_20110: redox-active disulfide protein 2 |
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Gene: Dret_1782: redox-active disulfide protein 2 |
redox-active disulfide protein 2 |
| DMR_20120 |
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Gene: DMR_20120: Carboxymuconolactone decarboxylase |
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Gene: Dret_1781: Carboxymuconolactone decarboxylase |
Carboxymuconolactone decarboxylase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |