Regulog DVU2394 - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | Energy metabolism |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
- By pathway - Energy metabolism
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | 9 | 1 |
| Desulfomicrobium baculatum DSM 4028 | 12 | 3 |
| Desulfovibrio desulfuricans G20 | 8 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio magneticus RS-1 | 11 | 2 |
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 1 | 1 |
| Desulfovibrio vulgaris Hildenborough | 1 | 1 |
| Desulfovibrio vulgaris str. Miyazaki F | 1 | 1 |
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| adh |
*
Desulfohalobium retbaense DSM 5692 Site: position = -296 score = 4.53251 sequence = TGTATCATTTTTTCCCA Site: position = -264 score = 4.75036 sequence = CGTGTCATTTTGCTACA Gene: Dret_0199: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -230 score = 4.72583 sequence = AGGATCAAAGTGATACA Site: position = -264 score = 5.27077 sequence = TGAGTCATTTTGACTCA Gene: Dbac_3326: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Desulfovibrio desulfuricans G20 Site: position = -258 score = 4.86032 sequence = TGTATCAGAATGAAACA Site: position = -200 score = 4.62339 sequence = GGGGTCAAATGGACACA Gene: Dde_3523: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|
|
|
*
Desulfovibrio salexigens DSM 2638 Site: position = -264 score = 5.32506 sequence = TGGTTCATATTGACACA Gene: Desal_0284: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Desulfovibrio vulgaris Hildenborough Site: position = -312 score = 4.90552 sequence = TGTGGCATTTCGACCCA Gene: DVU2405: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -311 score = 4.75673 sequence = TGTAGCATTTCGACCCA Gene: DvMF_0321: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
| hdrC |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0198: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) Gene: Dret_2317: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -84 score = 4.79121 sequence = TGTATCAATTTGGATCA Site: position = -50 score = 4.34852 sequence = TGTGTCAAAAAGGTTCA Gene: Dbac_0848: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
2
Desulfovibrio desulfuricans G20 Gene: Dde_3524: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) Gene: Dde_1207: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
Gene: Ddes_2098: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
*
Desulfovibrio magneticus RS-1 Site: position = -233 score = 4.97167 sequence = TGTACCAAAATGGCACA Gene: DMR_01900: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
Gene: DESPIG_02729: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
Gene: Desal_0602: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
Gene: DVU2404: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
Gene: DvMF_0322: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
|
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) |
| hdrB |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0197: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) Gene: Dret_2316: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
Gene: Dbac_0849: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
2
Desulfovibrio desulfuricans G20 Gene: Dde_3525: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) Gene: Dde_1208: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
Gene: Ddes_2099: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
Gene: DMR_01910: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
Gene: DESPIG_02730: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
Gene: Desal_0601: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
Gene: DVU2403: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
Gene: DvMF_0323: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
|
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) |
| hdrA |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0196: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) Gene: Dret_2315: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
Gene: Dbac_0850: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
2
Desulfovibrio desulfuricans G20 Gene: Dde_3526: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) Gene: Dde_1209: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
Gene: Ddes_2100: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
Gene: DMR_01920: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
Gene: DESPIG_02731: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
Gene: Desal_0600: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
Gene: DVU2402: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
Gene: DvMF_0324: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
|
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) |
| hdrD |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0195: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) Gene: Dret_2314: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) |
Gene: Dbac_0851: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) |
2
Desulfovibrio desulfuricans G20 Gene: Dde_1210: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) Gene: Dde_3527: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) |
|
Gene: DMR_01930: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) |
|
Gene: Desal_0599: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) |
|
|
|
CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) |
| DVU2401 |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0194: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein Gene: Dret_2313: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
Gene: Dbac_0852: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
2
Desulfovibrio desulfuricans G20 Gene: Dde_1211: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein Gene: Dde_3528: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
Gene: Ddes_2101: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
Gene: DMR_01940: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
Gene: DESPIG_02732: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
Gene: Desal_0598: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
Gene: DVU2401: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
Gene: DvMF_0325: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
|
coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein |
| DVU2400 |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0193: heterodisulfide reductase, iron-sulfur binding subunit, putative Gene: Dret_2312: heterodisulfide reductase, iron-sulfur binding subunit, putative |
Gene: Dbac_0853: heterodisulfide reductase, iron-sulfur binding subunit, putative |
2
Desulfovibrio desulfuricans G20 Gene: Dde_1212: heterodisulfide reductase, iron-sulfur binding subunit, putative Gene: Dde_3529: heterodisulfide reductase, iron-sulfur binding subunit, putative |
Gene: Ddes_2102: heterodisulfide reductase, iron-sulfur binding subunit, putative |
Gene: DMR_01950: heterodisulfide reductase, iron-sulfur binding subunit, putative |
Gene: DESPIG_02733: heterodisulfide reductase, iron-sulfur binding subunit, putative |
Gene: Desal_0597: heterodisulfide reductase, iron-sulfur binding subunit, putative |
Gene: DVU2400: heterodisulfide reductase, iron-sulfur binding subunit, putative |
Gene: DvMF_0326: heterodisulfide reductase, iron-sulfur binding subunit, putative |
|
heterodisulfide reductase, iron-sulfur binding subunit, putative |
| DVU2399 |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_2311: oxidoreductase FAD/NAD(P)-binding domain protein Gene: Dret_0192: oxidoreductase FAD/NAD(P)-binding domain protein |
Gene: Dbac_0854: oxidoreductase FAD/NAD(P)-binding domain protein |
2
Desulfovibrio desulfuricans G20 Gene: Dde_1213: oxidoreductase FAD/NAD(P)-binding domain protein Gene: Dde_3530: oxidoreductase FAD/NAD(P)-binding domain protein |
Gene: Ddes_2103: oxidoreductase FAD/NAD(P)-binding domain protein |
Gene: DMR_01960: oxidoreductase FAD/NAD(P)-binding domain protein |
Gene: DESPIG_02734: oxidoreductase FAD/NAD(P)-binding domain protein |
Gene: Desal_0596: oxidoreductase FAD/NAD(P)-binding domain protein |
Gene: DVU2399: oxidoreductase FAD/NAD(P)-binding domain protein |
Gene: DvMF_0327: oxidoreductase FAD/NAD(P)-binding domain protein |
|
oxidoreductase FAD/NAD(P)-binding domain protein |
| Dbac_0855 |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0191: Rubrerythrin Gene: Dret_2310: Rubrerythrin |
Gene: Dbac_0855: Rubrerythrin |
Gene: Dde_1214: Rubrerythrin |
|
Gene: DMR_01970: Rubrerythrin |
|
Gene: Desal_2939: Rubrerythrin |
Gene: DVU2398: Rubrerythrin |
Gene: DvMF_0328: Rubrerythrin |
|
Rubrerythrin |
| CRON 2. | |||||||||||
| adh |
Gene: Dret_0202: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -282 score = 4.72583 sequence = TGTATCACTTTGATCCT Site: position = -248 score = 5.27077 sequence = TGAGTCAAAATGACTCA Gene: Dbac_3325: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Gene: Dde_3534: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|
*
Desulfovibrio magneticus RS-1 Site: position = 10 score = 5.07944 sequence = TGGGTCAAAATGCTCCA Gene: DMR_02380: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|
Gene: Desal_0289: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Gene: DVU2396: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Gene: DvMF_0330: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
| DMR_02390 |
Gene: Dret_0201: PAS/PAC sensor signal transduction histidine kinase |
Gene: Dbac_3324: PAS/PAC sensor signal transduction histidine kinase |
Gene: Dde_3535: PAS/PAC sensor signal transduction histidine kinase |
|
Gene: DMR_02390: PAS/PAC sensor signal transduction histidine kinase |
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Gene: Desal_0288: PAS/PAC sensor signal transduction histidine kinase |
Gene: DVU2395: PAS/PAC sensor signal transduction histidine kinase |
Gene: DvMF_0331: PAS/PAC sensor signal transduction histidine kinase |
|
PAS/PAC sensor signal transduction histidine kinase |
| DMR_02400 |
Gene: Dret_0200: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: Dbac_3323: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: Dde_3536: two component, sigma54 specific, transcriptional regulator, Fis family |
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Gene: DMR_02400: two component, sigma54 specific, transcriptional regulator, Fis family |
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Gene: Desal_0287: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: DVU2394: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: DvMF_0332: two component, sigma54 specific, transcriptional regulator, Fis family |
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two component, sigma54 specific, transcriptional regulator, Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |