Regulon of Rex in Desulfovibrio vulgaris str. Miyazaki F
| Regulator type: | Transcription factor |
| TF locus tag: | DvMF_1390 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Desulfovibrionales |
| Statistics of regulated genes: | |
| - Genes | 33 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -148
Score: 4.1 Sequence: GTGGGGAATTTTTTCACGAA
Position: -76
Score: 4.3 Sequence: CTTGTGAACGTTTGCACGAA
Locus tag: DvMF_1386
Name: atpI1 Funciton: ATP synthase protein I
Locus tag: DvMF_1387
Name: atpI2 Funciton: ATP synthase protein I2
Locus tag: DvMF_1388
Name: atpB Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: DvMF_1389
Name: atpE Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: DvMF_1390
Name: rex Funciton: Redox-sensing transcriptional repressor Rex |
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atpI1
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ATP synthase protein I
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atpI2
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ATP synthase protein I2
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atpB
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ATP synthase A chain (EC 3.6.3.14)
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atpE
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ATP synthase C chain (EC 3.6.3.14)
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rex
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Redox-sensing transcriptional repressor Rex
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Position: -38
Score: 4.9 Sequence: TTTGAGCTTAAATTCACAAC
Locus tag: DvMF_2826
Name: atpF1 Funciton: ATP synthase B' chain (EC 3.6.3.14)
Locus tag: DvMF_2827
Name: atpF2 Funciton: ATP synthase F0, B subunit
Locus tag: DvMF_2828
Name: atpH Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: DvMF_2829
Name: atpA Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: DvMF_2830
Name: atpG Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: DvMF_2831
Name: atpD Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: DvMF_2832
Name: atpC Funciton: ATP synthase epsilon chain (EC 3.6.3.14) |
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atpF1
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ATP synthase B' chain (EC 3.6.3.14)
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atpF2
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ATP synthase F0, B subunit
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atpH
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ATP synthase delta chain (EC 3.6.3.14)
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atpA
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ATP synthase alpha chain (EC 3.6.3.14)
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atpG
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ATP synthase gamma chain (EC 3.6.3.14)
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atpD
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ATP synthase beta chain (EC 3.6.3.14)
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atpC
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ATP synthase epsilon chain (EC 3.6.3.14)
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Position: -175
Score: 4.5 Sequence: ATCGTGATTGTTTTCACGAA
Locus tag: DvMF_0320
Name: phsA Funciton: thiosulfate reductase, putative
Locus tag: DvMF_0319
Name: phsB Funciton: thiosulfate reductase, iron-sulfur binding subunit |
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phsA
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thiosulfate reductase, putative
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phsB
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thiosulfate reductase, iron-sulfur binding subunit
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Position: -112
Score: 5.1 Sequence: TTCGTGAAATATTTCACCTT
Locus tag: DvMF_2690
Name: qrcA Funciton: cytochrome c class III family protein
Locus tag: DvMF_2689
Name: qrcB Funciton: molybdopterin oxidoreductase, molybdopterin-binding subunit, putative
Locus tag: DvMF_2688
Name: qrcC Funciton: molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative
Locus tag: DvMF_2687
Name: qrcD Funciton: molybdopterin oxidoreductase, transmembrane subunit, putative |
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qrcA
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cytochrome c class III family protein
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qrcB
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molybdopterin oxidoreductase, molybdopterin-binding subunit, putative
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qrcC
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molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative
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qrcD
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molybdopterin oxidoreductase, transmembrane subunit, putative
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Position: -92
Score: 5.3 Sequence: TTTGTGCTATTTGGCACAAA
Locus tag: DvMF_0420
Name: ppaC Funciton: Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1) |
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ppaC
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Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)
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Position: -96
Score: 4.5 Sequence: CTTGAGAAAAAAGGCGCAAA
Locus tag: DvMF_0500
Name: hupB Funciton: DNA-binding protein HU-beta (hupB) |
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hupB
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DNA-binding protein HU-beta (hupB)
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Position: 21
Score: 4.2 Sequence: TTCGTCAAATTGTGCACAGG
Locus tag: DvMF_0274
Name: hysB Funciton: periplasmic [NiFeSe] hydrogenase, small subunit
Locus tag: DvMF_0273
Name: hysA Funciton: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
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hysB
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periplasmic [NiFeSe] hydrogenase, small subunit
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hysA
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periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
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Position: -164
Score: 5.4 Sequence: TATGTAAAATATTTCACAAG
Locus tag: DvMF_0074
Name: sat Funciton: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
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sat
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Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
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Position: -171
Score: 5.1 Sequence: ATTGTTAAATCAGTCACAAG
Locus tag: DvMF_2892
Name: apsB Funciton: Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)
Locus tag: DvMF_2893
Name: apsA Funciton: Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)
Locus tag: DvMF_2894
Name: qmoA Funciton: quinone-interacting membrane-bound oxidoreductase complex subunit A
Locus tag: DvMF_2895
Name: qmoB Funciton: quinone-interacting membrane-bound oxidoreductase complex subunit B
Locus tag: DvMF_2896
Name: qmoC Funciton: quinone-interacting membrane-bound oxidoreductase complex subunit C
Locus tag: DvMF_2897
Name: null Funciton: hypothetical protein |
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apsB
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Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)
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apsA
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Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)
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qmoA
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quinone-interacting membrane-bound oxidoreductase complex subunit A
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qmoB
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quinone-interacting membrane-bound oxidoreductase complex subunit B
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qmoC
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quinone-interacting membrane-bound oxidoreductase complex subunit C
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hypothetical protein
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Position: -30
Score: 5.1 Sequence: CTCGTGAAAATTATTACAAG
Locus tag: DvMF_0293
Name: adk Funciton: Adenylate kinase (EC 2.7.4.3) |
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adk
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Adenylate kinase (EC 2.7.4.3)
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Position: -151
Score: 4.5 Sequence: TTTGTCCAAAAAATCACGAG
Locus tag: DvMF_1553
Name: dsrA Funciton: Sulfite reductase alpha subunit (EC 1.8.99.1)
Locus tag: DvMF_1554
Name: dsrB Funciton: Sulfite reductase beta subunit (EC 1.8.99.1)
Locus tag: DvMF_1555
Name: dsrD Funciton: Dissimilatory sulfite reductase D |
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dsrA
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Sulfite reductase alpha subunit (EC 1.8.99.1)
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dsrB
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Sulfite reductase beta subunit (EC 1.8.99.1)
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dsrD
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Dissimilatory sulfite reductase D
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |