Regulon of PhoB in Desulfovibrio magneticus RS-1
| Regulator type: | Transcription factor |
| TF locus tag: | DMR_02640 |
| Regulator family: | OmpR |
| Regulation mode: | activator |
| Biological process: | Phosphate metabolism |
| Effector: | Inorganic phosphate |
| Regulog: | PhoB - Desulfovibrionales |
| Statistics of regulated genes: | |
| - Genes | 20 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - OmpR
- By effector - Inorganic phosphate
- By pathway - Phosphate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -181
Score: 4.6 Sequence: GCGACACCCTGTCGTAAC
Position: -170
Score: 3.8 Sequence: TCGTAACCGGCCCGCCAC
Locus tag: DMR_33040
Name: null Funciton: PhoU family protein |
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PhoU family protein
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Position: -85
Score: 4.1 Sequence: GCGTCACGTAATCGTCGC
Locus tag: DMR_13500
Name: null Funciton: diguanylate cyclase/phosphodiesterase |
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diguanylate cyclase/phosphodiesterase
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Position: -116
Score: 5.3 Sequence: TTGTCACGAGATTGTCAC
Position: -31
Score: 3.9 Sequence: TCGTCACGCTTCTGCCAT
Locus tag: DMR_08630
Name: null Funciton: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)
Locus tag: DMR_08640
Name: null Funciton: Phosphate transport regulator (distant homolog of PhoU)
Locus tag: DMR_08650
Name: null Funciton: Probable low-affinity inorganic phosphate transporter |
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Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)
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Phosphate transport regulator (distant homolog of PhoU)
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Probable low-affinity inorganic phosphate transporter
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Position: -65
Score: 4.2 Sequence: ACGCCACGGGTTCGTCAC
Locus tag: DMR_08520
Name: null Funciton: Alkaline phosphatase (EC 3.1.3.1)
Locus tag: DMR_08530
Name: null Funciton: YibE/F family protein |
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Alkaline phosphatase (EC 3.1.3.1)
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YibE/F family protein
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Position: -292
Score: 4.3 Sequence: TTGTCACGGAAATGTCGC
Position: -116
Score: 4.1 Sequence: TTGTCACCGGTTTGCCAT
Locus tag: DMR_20230
Name: null Funciton: GGDEF domain protein
Locus tag: DMR_20240
Name: pstB Funciton: phosphate import ATP-binding protein PstB
Locus tag: DMR_20250
Name: null Funciton: Phosphate transport system regulatory protein PhoU
Locus tag: DMR_20260
Name: null Funciton: HPr kinase
Locus tag: DMR_20270
Name: null Funciton: protein of unknown function UPF0052 and CofD
Locus tag: DMR_20280
Name: corA Funciton: Mg2+ transporter protein, CorA family protein |
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GGDEF domain protein
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pstB
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phosphate import ATP-binding protein PstB
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Phosphate transport system regulatory protein PhoU
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HPr kinase
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protein of unknown function UPF0052 and CofD
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corA
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Mg2+ transporter protein, CorA family protein
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Position: -62
Score: 4.2 Sequence: CCGACGCGCTATTGTCAC
Locus tag: DMR_24190
Name: null Funciton: Radical SAM domain protein
Locus tag: DMR_24180
Name: null Funciton: hypothetical protein |
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Radical SAM domain protein
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hypothetical protein
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Position: -83
Score: 5.5 Sequence: GTGTCACACAATCGTCAC
Locus tag: DMR_02640
Name: phoB Funciton: phosphate regulon transcriptional regulator PhoB
Locus tag: DMR_02630
Name: null Funciton: PAS/PAC sensor signal transduction histidine kinase |
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phoB
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phosphate regulon transcriptional regulator PhoB
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PAS/PAC sensor signal transduction histidine kinase
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Position: -100
Score: 5.2 Sequence: GCGTCACCGGACCGTAAC
Locus tag: DMR_38880
Name: pstS Funciton: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
Locus tag: DMR_38870
Name: pstC-2 Funciton: Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
Locus tag: DMR_38860
Name: pstA-2 Funciton: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
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pstS
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Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
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pstC-2
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Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
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pstA-2
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Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |