Regulog PhoB - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | OmpR |
| Regulation mode: | activator |
| Biological process: | Phosphate metabolism |
| Effector: | Inorganic phosphate |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - OmpR
- By effector - Inorganic phosphate
- By pathway - Phosphate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 23 | 8 |
| Desulfovibrio vulgaris str. Miyazaki F | 12 | 8 |
| Desulfovibrio desulfuricans G20 | 27 | 10 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 8 | 2 |
| Desulfovibrio piger ATCC 29098 | 8 | 3 |
| Desulfovibrio salexigens DSM 2638 | 22 | 8 |
| Desulfovibrio magneticus RS-1 | 20 | 8 |
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 27 | 9 |
| Desulfohalobium retbaense DSM 5692 | 11 | 4 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| Dbac_0213 |
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Desulfomicrobium baculatum DSM 4028 Site: position = -132 score = 4.6792 sequence = TTGTTACCGCTCTGTGAC Site: position = -121 score = 4.22048 sequence = CTGTGACAGTTTTGTTTC Site: position = -40 score = 5.40347 sequence = TTGTCATACAATTGTCAC Gene: Dbac_0213: Na/Pi-cotransporter II-related protein |
Gene: Dret_1044: Na/Pi-cotransporter II-related protein |
Na/Pi-cotransporter II-related protein |
| CRON 2. | |||||||||||
| Dbac_1141 |
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Desulfomicrobium baculatum DSM 4028 Site: position = -129 score = 5.47675 sequence = TCGTCACACATCTGTCAC Site: position = -118 score = 4.81026 sequence = CTGTCACACCCCTGTCAT Site: position = -107 score = 4.23472 sequence = CTGTCATCCGATTTTGAC Gene: Dbac_1141: methyl-accepting chemotaxis sensory transducer |
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methyl-accepting chemotaxis sensory transducer |
| CRON 3. | |||||||||||
| Dbac_1842 |
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Desulfomicrobium baculatum DSM 4028 Site: position = -104 score = 4.29734 sequence = TTGACATCATCCTGTCAC Site: position = -64 score = 4.65303 sequence = TTGTCATTCTTATGTCAC Site: position = -53 score = 4.52513 sequence = ATGTCACAGTTTCGAAAC Gene: Dbac_1842: extracellular solute-binding protein family 1 |
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extracellular solute-binding protein family 1 |
| Dbac_1841 |
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Gene: Dbac_1841: ABC transporter related |
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ABC transporter related |
| Dbac_1840 |
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Gene: Dbac_1840: binding-protein-dependent transport systems inner membrane component |
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binding-protein-dependent transport systems inner membrane component |
| Dbac_1839 |
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Gene: Dbac_1839: Amidase |
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Amidase |
| Dbac_1838 |
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Gene: Dbac_1838: cytidine deaminase |
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cytidine deaminase |
| CRON 4. | |||||||||||
| DMR_23800 |
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Gene: DMR_23800: inner membrane protein YohD |
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Desulfomicrobium baculatum DSM 4028 Site: position = -114 score = 4.50945 sequence = CCGTGACCGCACCGTGAC Site: position = -62 score = 4.82771 sequence = CTGTCACCCAAACGTCAC Site: position = -51 score = 5.10893 sequence = ACGTCACCGCGCTGTCAC Gene: Dbac_2694: inner membrane protein YohD |
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inner membrane protein YohD |
| CRON 5. | |||||||||||
| DVU0169 |
Gene: DVU0169: oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein |
Gene: DvMF_1829: oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein |
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Desulfovibrio desulfuricans G20 Site: position = -19 score = 3.8572 sequence = ATGTTACAAAAATGTCAT Gene: Dde_0275: oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein |
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Gene: Desal_2969: oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein |
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Gene: Dbac_1792: oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein |
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Desulfohalobium retbaense DSM 5692 Site: position = -147 score = 4.38979 sequence = TTGTCACACGATTGTATA Gene: Dret_1361: oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein |
oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein |
| DVU0168 |
Gene: DVU0168: Oligopeptide/dipeptide ABC transporter, permease protein |
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Gene: Dde_0274: Oligopeptide/dipeptide ABC transporter, permease protein |
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Gene: Dbac_1793: Oligopeptide/dipeptide ABC transporter, permease protein |
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Oligopeptide/dipeptide ABC transporter, permease protein |
| oppC |
Gene: DVU0167: oligopeptide/dipeptide ABC transporter, permease protein |
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Gene: Dde_0273: oligopeptide/dipeptide ABC transporter, permease protein |
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Gene: Dbac_1794: oligopeptide/dipeptide ABC transporter, permease protein |
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oligopeptide/dipeptide ABC transporter, permease protein |
| oppD |
Gene: DVU0166: Oligopeptide/dipeptide ABC transporter, ATP-binding protein |
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Gene: Dde_0272: Oligopeptide/dipeptide ABC transporter, ATP-binding protein |
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Gene: Dbac_1795: Oligopeptide/dipeptide ABC transporter, ATP-binding protein |
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Oligopeptide/dipeptide ABC transporter, ATP-binding protein |
| oppF |
Gene: DVU0165: Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) |
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Gene: Dde_0271: Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) |
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Gene: Dbac_1796: Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) |
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Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) |
| CRON 6. | |||||||||||
| Desal_2167 |
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Desulfovibrio salexigens DSM 2638 Site: position = -95 score = 4.26852 sequence = GTGTTACATTATCGTTAC Site: position = -84 score = 4.37707 sequence = TCGTTACAAAGTTGTATC Gene: Desal_2167: methyl-accepting chemotaxis sensory transducer |
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methyl-accepting chemotaxis sensory transducer |
| CRON 7. | |||||||||||
| DvMF_0944 |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -185 score = 4.00385 sequence = GTGACACACGTCCGCCAC Gene: DvMF_0944: protein of unknown function DUF6 transmembrane |
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Desulfovibrio piger ATCC 29098 Site: position = -41 score = 4.44447 sequence = GTGTAACCTACTCGTCAC Site: position = -30 score = 3.8496 sequence = TCGTCACATCATTGACGC Site: position = -19 score = 3.8714 sequence = TTGACGCGAGGTCGTAAC Gene: DESPIG_00907: protein of unknown function DUF6 transmembrane |
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protein of unknown function DUF6 transmembrane |
| CRON 8. | |||||||||||
| DMR_33040 |
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Desulfovibrio magneticus RS-1 Site: position = -181 score = 4.61643 sequence = GCGACACCCTGTCGTAAC Site: position = -170 score = 3.78486 sequence = TCGTAACCGGCCCGCCAC Gene: DMR_33040: PhoU family protein |
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PhoU family protein |
| CRON 9. | |||||||||||
| dppA |
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Desulfovibrio desulfuricans G20 Site: position = -113 score = 4.41884 sequence = TCGTCACATTTTTGTGAT Gene: Dde_1185: putative oligopeptide ABC transporter binding protein |
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putative oligopeptide ABC transporter binding protein |
| dppB |
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Gene: Dde_1184: dipeptide ABC transporter, permease protein |
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dipeptide ABC transporter, permease protein |
| dppC |
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Gene: Dde_1183: putative permease of ABC transporter |
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putative permease of ABC transporter |
| dppD |
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Gene: Dde_1182: oligopeptide/dipeptide ABC transporter, ATPase subunit |
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Gene: Desal_2310: oligopeptide/dipeptide ABC transporter, ATPase subunit |
Gene: DMR_44910: oligopeptide/dipeptide ABC transporter, ATPase subunit |
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oligopeptide/dipeptide ABC transporter, ATPase subunit |
| oppF |
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Gene: Dde_1181: oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
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oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
| CRON 10. | |||||||||||
| DVU0093 |
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Desulfovibrio vulgaris Hildenborough Site: position = -110 score = 3.93836 sequence = TCGTCACCACAACGTCAG Gene: DVU0093: conserved domain protein/glycosyl transferase, group 1 family protein |
Gene: DvMF_2328: conserved domain protein/glycosyl transferase, group 1 family protein |
Gene: Dde_3613: conserved domain protein/glycosyl transferase, group 1 family protein |
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Gene: Desal_0766: conserved domain protein/glycosyl transferase, group 1 family protein |
Gene: DMR_20210: conserved domain protein/glycosyl transferase, group 1 family protein |
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Desulfomicrobium baculatum DSM 4028 Site: position = -141 score = 4.01364 sequence = CTGTGACATTTGCGTCAC Site: position = -130 score = 5.04766 sequence = GCGTCACAGTTCCGTGAC Site: position = -70 score = 3.83465 sequence = TTGCCATGCAAGCGTAAC Gene: Dbac_2705: conserved domain protein/glycosyl transferase, group 1 family protein |
Gene: Dret_1989: conserved domain protein/glycosyl transferase, group 1 family protein |
conserved domain protein/glycosyl transferase, group 1 family protein |
| CRON 11. | |||||||||||
| DVU1959 |
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Desulfovibrio vulgaris Hildenborough Site: position = -98 score = 4.55273 sequence = TCGAAACCGCATTGTCAC Site: position = -87 score = 5.10783 sequence = TTGTCACCCTGCCGTCAC Gene: DVU1959: diguanylate cyclase/phosphodiesterase |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -37 score = 4.46792 sequence = TCGTCATCTGTCCGTCAC Gene: DvMF_0617: diguanylate cyclase/phosphodiesterase |
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Desulfovibrio desulfuricans G20 Site: position = -87 score = 4.79099 sequence = TTGTCACACAGCTGGCAC Gene: Dde_1628: diguanylate cyclase/phosphodiesterase |
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Desulfovibrio magneticus RS-1 Site: position = -85 score = 4.12872 sequence = GCGTCACGTAATCGTCGC Gene: DMR_13500: diguanylate cyclase/phosphodiesterase |
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Desulfomicrobium baculatum DSM 4028 Site: position = -180 score = 5.05827 sequence = GTGTGACAGCATTGTGAC Site: position = -103 score = 4.01434 sequence = TTGTCGCGAAACTGTCGC Gene: Dbac_2663: diguanylate cyclase/phosphodiesterase |
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diguanylate cyclase/phosphodiesterase |
| CRON 12. | |||||||||||
| DVU0013 |
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Desulfovibrio vulgaris Hildenborough Site: position = -44 score = 4.26791 sequence = TTGTAACCTTGCCGTGAC Gene: DVU0013: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) |
Gene: DvMF_2133: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) |
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Desulfovibrio desulfuricans G20 Site: position = -48 score = 4.14751 sequence = TTGTAACAATCGTGTGAC Gene: Dde_3782: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) |
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Desulfovibrio salexigens DSM 2638 Site: position = -198 score = 5.20067 sequence = TTGTAACTGTATTGTAAC Site: position = -68 score = 4.41772 sequence = TTGTTACTCCCCTGTGAC Gene: Desal_0095: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) |
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Desulfovibrio magneticus RS-1 Site: position = -116 score = 5.26575 sequence = TTGTCACGAGATTGTCAC Site: position = -31 score = 3.91454 sequence = TCGTCACGCTTCTGCCAT Gene: DMR_08630: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) |
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Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) |
| Dde_3781 |
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Desulfovibrio desulfuricans G20 Site: position = -202 score = 5.2259 sequence = TTGTCACACGATTGTTAC Site: position = -232 score = 3.92449 sequence = ATGTTATTTAACCGTCAC Gene: Dde_3781: Probable low-affinity inorganic phosphate transporter |
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Gene: Desal_0094: Probable low-affinity inorganic phosphate transporter |
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Probable low-affinity inorganic phosphate transporter |
| Dde_3780 |
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Gene: Dde_3780: phosphate transport regulator-like |
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Gene: Desal_0093: phosphate transport regulator-like |
Gene: DMR_04360: phosphate transport regulator-like |
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phosphate transport regulator-like |
| DVU2305 |
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Desulfovibrio vulgaris Hildenborough Site: position = -290 score = 3.79194 sequence = TCGCCGCAGAATAGTCAC Site: position = -279 score = 3.78025 sequence = TAGTCACAATCACGTTAC Site: position = -137 score = 5.34263 sequence = TCGTCACTGTTCTGTAAC Gene: DVU2305: Phosphate transport regulator (distant homolog of PhoU) |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -281 score = 5.06371 sequence = ATGTCACCGTTCCGTAAC Site: position = -133 score = 4.32283 sequence = CCGCGACACATCCGTAAC Gene: DvMF_3186: Phosphate transport regulator (distant homolog of PhoU) |
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Gene: Ddes_1961: Phosphate transport regulator (distant homolog of PhoU) |
Gene: DESPIG_02431: Phosphate transport regulator (distant homolog of PhoU) |
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Gene: DMR_08640: Phosphate transport regulator (distant homolog of PhoU) |
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Phosphate transport regulator (distant homolog of PhoU) |
| DVU2306 |
Gene: DVU2306: Probable low-affinity inorganic phosphate transporter |
Gene: DvMF_3185: Probable low-affinity inorganic phosphate transporter |
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Gene: Ddes_1960: Probable low-affinity inorganic phosphate transporter |
Gene: DESPIG_02432: Probable low-affinity inorganic phosphate transporter |
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Gene: DMR_08650: Probable low-affinity inorganic phosphate transporter |
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Probable low-affinity inorganic phosphate transporter |
| Dde_3783 |
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Gene: Dde_3783: hypothetical protein |
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hypothetical protein |
| CRON 13. | |||||||||||
| DVU2747 |
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Desulfovibrio vulgaris Hildenborough Site: position = -57 score = 4.73323 sequence = CCGTAACCATTCCGTAAC Gene: DVU2747: conserved hypothetical protein |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -141 score = 4.53167 sequence = CCGTAACCTTTCCGTAAC Gene: DvMF_1169: conserved hypothetical protein |
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conserved hypothetical protein |
| CRON 14. | |||||||||||
| DVU3161 |
Gene: DVU3161: SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3) |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -218 score = 4.59746 sequence = ACGCCACACCATCGTCAC Gene: DvMF_0655: SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3) |
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SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3) |
| DVU3162 |
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Desulfovibrio vulgaris Hildenborough Site: position = -103 score = 4.16565 sequence = GCGACGCACTGCCGTAAC Gene: DVU3162: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) |
Gene: DvMF_0656: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) |
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Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) |
| DVU3163 |
Gene: DVU3163: SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3) |
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SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3) |
| DVU3164 |
Gene: DVU3164: ABC transporter, permease protein |
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ABC transporter, permease protein |
| DVU3165 |
Gene: DVU3165: Conserved domain protein |
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Conserved domain protein |
| DVU3166 |
Gene: DVU3166: alanyl-tRNA synthetase family protein, putative |
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alanyl-tRNA synthetase family protein, putative |
| DVU3167 |
Gene: DVU3167: heme biosynthesis protein, putative |
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heme biosynthesis protein, putative |
| hemL |
Gene: DVU3168: glutamate-1-semialdehyde-2,1-aminomutase |
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glutamate-1-semialdehyde-2,1-aminomutase |
| cbiG |
Gene: DVU3169: Cobalamin biosynthesis protein CbiG |
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Cobalamin biosynthesis protein CbiG |
| CRON 15. | |||||||||||
| phnC |
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Desulfovibrio desulfuricans G20 Site: position = -253 score = 4.81893 sequence = CGGTCACACGGCTGTCAC Gene: Dde_3324: ATPase |
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ATPase |
| phnD |
Gene: DVU1937: phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative |
Gene: DvMF_0598: phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative |
2
Desulfovibrio desulfuricans G20 Gene: Dde_3730: phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative Gene: Dde_3325: phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative |
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Gene: Dbac_0856: phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative |
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phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative |
| phnE |
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Gene: Dde_3326: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
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Gene: DESPIG_01264: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
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Gene: Dbac_0827: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
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Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
| CRON 16. | |||||||||||
| Dde_1216 |
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Desulfovibrio desulfuricans G20 Site: position = -95 score = 5.05883 sequence = CTGTCATTCTGTTGTCAC Gene: Dde_1216: Alkaline phosphatase (EC 3.1.3.1) |
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Desulfovibrio salexigens DSM 2638 Site: position = -232 score = 4.25677 sequence = TTGTCACTAATTTGTATT Gene: Desal_1742: Alkaline phosphatase (EC 3.1.3.1) |
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Desulfovibrio magneticus RS-1 Site: position = -65 score = 4.22583 sequence = ACGCCACGGGTTCGTCAC Gene: DMR_08520: Alkaline phosphatase (EC 3.1.3.1) |
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Desulfohalobium retbaense DSM 5692 Site: position = -102 score = 3.8727 sequence = GCGCCATGCCTGTGTCAC Gene: Dret_2292: Alkaline phosphatase (EC 3.1.3.1) |
Alkaline phosphatase (EC 3.1.3.1) |
| Dde_1217 |
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Gene: Dde_1217: YibE/F family protein |
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2
Desulfovibrio salexigens DSM 2638 Gene: Desal_2052: YibE/F family protein Gene: Desal_1743: YibE/F family protein |
Gene: DMR_08530: YibE/F family protein |
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Gene: Dret_2291: YibE/F family protein |
YibE/F family protein |
| Desal_1744 |
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Gene: Desal_1744: acid phosphatase (Class B) |
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acid phosphatase (Class B) |
| CRON 17. | |||||||||||
| DVU1086 |
Gene: DVU1086: conserved hypothetical protein |
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Gene: Desal_3085: conserved hypothetical protein |
Gene: DMR_33410: conserved hypothetical protein |
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Desulfomicrobium baculatum DSM 4028 Site: position = -107 score = 5.17579 sequence = CTGTCACGGAACTGTGAC Site: position = -96 score = 4.53036 sequence = CTGTGACGCAAATGTCAC Gene: Dbac_2704: conserved hypothetical protein |
Gene: Dret_0473: conserved hypothetical protein |
conserved hypothetical protein |
| DVU3219 |
Gene: DVU3219: conserved hypothetical protein |
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Gene: Desal_3086: conserved hypothetical protein |
Gene: DMR_33400: conserved hypothetical protein |
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Gene: Dbac_2703: conserved hypothetical protein |
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Desulfohalobium retbaense DSM 5692 Site: position = -203 score = 5.36986 sequence = GCGTCATAGCATTGTCAC Gene: Dret_1981: conserved hypothetical protein |
conserved hypothetical protein |
| Desal_3087 |
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Desulfovibrio salexigens DSM 2638 Site: position = -83 score = 3.85372 sequence = TCGTCATCGAATCTTTAC Gene: Desal_3087: hypothetical protein |
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Gene: Dbac_2702: hypothetical protein |
Gene: Dret_1982: hypothetical protein |
hypothetical protein |
| Desal_3088 |
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Gene: Desal_3088: phosphate uptake regulator, PhoU |
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Gene: Dbac_2701: phosphate uptake regulator, PhoU |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0470: phosphate uptake regulator, PhoU Gene: Dret_1983: phosphate uptake regulator, PhoU |
phosphate uptake regulator, PhoU |
| Desal_3089 |
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Gene: Desal_3089: RimK domain protein ATP-grasp |
Gene: DMR_18070: RimK domain protein ATP-grasp |
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Gene: Dbac_2700: RimK domain protein ATP-grasp |
Gene: Dret_1984: RimK domain protein ATP-grasp |
RimK domain protein ATP-grasp |
| Desal_3090 |
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Gene: Desal_3090: HPr kinase |
Gene: DMR_20260: HPr kinase |
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Gene: Dbac_2699: HPr kinase |
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HPr kinase |
| DVU1087 |
Gene: DVU1087: protein of unknown function UPF0052 and CofD |
Gene: DvMF_0878: protein of unknown function UPF0052 and CofD |
Gene: Dde_3600: protein of unknown function UPF0052 and CofD |
Gene: Ddes_1963: protein of unknown function UPF0052 and CofD |
Gene: DESPIG_02428: protein of unknown function UPF0052 and CofD |
*2
Desulfovibrio salexigens DSM 2638 Gene: Desal_3098: protein of unknown function UPF0052 and CofD Site: position = -280 score = 4.34738 sequence = GCGTGACAACTCTGAAAC Gene: Desal_3091: protein of unknown function UPF0052 and CofD |
Gene: DMR_20270: protein of unknown function UPF0052 and CofD |
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Gene: Dbac_2698: protein of unknown function UPF0052 and CofD |
Gene: Dret_1986: protein of unknown function UPF0052 and CofD |
protein of unknown function UPF0052 and CofD |
| Dbac_2697 |
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Gene: Dbac_2697: hypothetical protein |
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hypothetical protein |
| Dbac_2696 |
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Gene: Dbac_2696: histone family protein DNA-binding protein |
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histone family protein DNA-binding protein |
| DMR_24190 |
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Desulfovibrio magneticus RS-1 Site: position = -62 score = 4.18626 sequence = CCGACGCGCTATTGTCAC Gene: DMR_24190: Radical SAM domain protein |
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Gene: Dbac_2695: Radical SAM domain protein |
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Radical SAM domain protein |
| DESPIG_02521 |
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Gene: DESPIG_02521: HPr kinase |
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Gene: Dret_1985: HPr kinase |
HPr kinase |
| DVU3217 |
Gene: DVU3217: conserved hypothetical protein |
Gene: DvMF_2199: conserved hypothetical protein |
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Gene: Desal_3092: conserved hypothetical protein |
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Gene: Dret_1987: conserved hypothetical protein |
conserved hypothetical protein |
| DMR_20230 |
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Desulfovibrio magneticus RS-1 Site: position = -292 score = 4.26412 sequence = TTGTCACGGAAATGTCGC Gene: DMR_20230: GGDEF domain protein |
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GGDEF domain protein |
| pstB |
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Desulfovibrio magneticus RS-1 Site: position = -116 score = 4.09857 sequence = TTGTCACCGGTTTGCCAT Gene: DMR_20240: phosphate import ATP-binding protein PstB |
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phosphate import ATP-binding protein PstB |
| Ddes_0570 |
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Gene: Ddes_0570: Phosphate transport system regulatory protein PhoU |
Gene: DESPIG_03040: Phosphate transport system regulatory protein PhoU |
Gene: Desal_3391: Phosphate transport system regulatory protein PhoU |
2
Desulfovibrio magneticus RS-1 Gene: DMR_05210: Phosphate transport system regulatory protein PhoU Gene: DMR_20250: Phosphate transport system regulatory protein PhoU |
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Phosphate transport system regulatory protein PhoU |
| corA |
Gene: DVU2584: Mg2+ transporter protein, CorA family protein |
Gene: DvMF_1055: Mg2+ transporter protein, CorA family protein |
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Gene: DMR_20280: Mg2+ transporter protein, CorA family protein |
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Gene: Dbac_0023: Mg2+ transporter protein, CorA family protein |
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Mg2+ transporter protein, CorA family protein |
| phoB |
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Desulfovibrio vulgaris Hildenborough Site: position = -179 score = 4.9041 sequence = CTGTAACAGCCCCGTAAC Site: position = -85 score = 5.37706 sequence = ATGTCACACGGTTGTAAC Gene: DVU1083: phosphate regulon transcriptional regulator PhoB |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -86 score = 5.02411 sequence = ATGTCACATCCTTGTAAC Site: position = -180 score = 5.30698 sequence = TTGTCACGCCGTTGTCAC Gene: DvMF_0882: phosphate regulon transcriptional regulator PhoB |
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Desulfovibrio desulfuricans G20 Site: position = -88 score = 4.76312 sequence = GCGTAACGTGATTGTAAC Gene: Dde_2387: phosphate regulon transcriptional regulator PhoB |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -82 score = 5.23261 sequence = ATGTCACGAAATTGTAAC Gene: Ddes_0567: phosphate regulon transcriptional regulator PhoB |
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Desulfovibrio piger ATCC 29098 Site: position = -147 score = 4.13883 sequence = TTGTTACGAAAATGTGAC Site: position = -91 score = 4.06042 sequence = TTTTTACGGCCCTGTCAC Site: position = -80 score = 5.7491 sequence = CTGTCACACAATTGTAAC Gene: DESPIG_03037: phosphate regulon transcriptional regulator PhoB |
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Desulfovibrio salexigens DSM 2638 Site: position = -76 score = 3.80118 sequence = AATTAACATAGTTGTAAC Gene: Desal_3695: phosphate regulon transcriptional regulator PhoB |
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Desulfovibrio magneticus RS-1 Site: position = -83 score = 5.46734 sequence = GTGTCACACAATCGTCAC Gene: DMR_02640: phosphate regulon transcriptional regulator PhoB |
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Desulfomicrobium baculatum DSM 4028 Site: position = -98 score = 5.45165 sequence = GTGTCACAATGCTGTCAC Gene: Dbac_2662: phosphate regulon transcriptional regulator PhoB |
Gene: Dret_0467: phosphate regulon transcriptional regulator PhoB |
phosphate regulon transcriptional regulator PhoB |
| DESPIG_03038 |
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Gene: Ddes_0568: histidine kinase |
Gene: DESPIG_03038: PAS/PAC sensor signal transduction histidine kinase |
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Desulfovibrio salexigens DSM 2638 Site: position = -85 score = 3.98913 sequence = TCCTTACCTGATTGTCAC Gene: Desal_3694: PAS/PAC sensor signal transduction histidine kinase |
Gene: DMR_02630: PAS/PAC sensor signal transduction histidine kinase |
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PAS/PAC sensor signal transduction histidine kinase |
| pstB-1 |
Gene: DVU1084: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) |
Gene: DvMF_0881: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) |
Gene: Dde_2386: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) |
Gene: Ddes_0569: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) |
Gene: DESPIG_03039: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) |
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Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) |
| Ddes_0571 |
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Gene: Ddes_0571: protein of unknown function UPF0153 |
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protein of unknown function UPF0153 |
| phoU |
Gene: DVU1085: Phosphate transport system regulatory protein PhoU |
Gene: DvMF_0880: Phosphate transport system regulatory protein PhoU |
Gene: Dde_2385: Phosphate transport system regulatory protein PhoU |
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Gene: Dbac_2659: Phosphate transport system regulatory protein PhoU |
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Phosphate transport system regulatory protein PhoU |
| Dbac_2661 |
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Gene: Dbac_2661: PAS/PAC sensor signal transduction histidine kinase |
Gene: Dret_0468: PAS/PAC sensor signal transduction histidine kinase |
PAS/PAC sensor signal transduction histidine kinase |
| Desal_3392 |
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Desulfovibrio salexigens DSM 2638 Site: position = -166 score = 4.3951 sequence = GCGTAACATAAACGTAAC Site: position = -144 score = 4.75097 sequence = GAGTCATTGCTCTGTAAC Gene: Desal_3392: phosphate ABC transporter, ATPase subunit |
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Gene: Dbac_2660: phosphate ABC transporter, ATPase subunit |
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phosphate ABC transporter, ATPase subunit |
| DMR_24180 |
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Gene: DMR_24180: hypothetical protein |
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hypothetical protein |
| CRON 18. | |||||||||||
| DvMF_1040 |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -156 score = 5.23133 sequence = GCGTCACACCGCCGTCAC Site: position = -176 score = 3.78112 sequence = CCGCCACCGGGCCGCAAC Gene: DvMF_1040: PhoH family protein |
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PhoH family protein |
| CRON 19. | |||||||||||
| pstS |
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Desulfovibrio vulgaris Hildenborough Site: position = -87 score = 4.2715 sequence = CCGCAACCGTTCCGTAAC Gene: DVU2477: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) |
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Desulfovibrio desulfuricans G20 Site: position = -115 score = 4.74495 sequence = ATGACACAGCACCGTAAC Site: position = -241 score = 4.80453 sequence = CTGTAACCGTGCTGTGAC Gene: Dde_1062: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -99 score = 5.03895 sequence = CCGTCATCATTCTGTAAC Gene: Ddes_0566: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) |
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Desulfovibrio piger ATCC 29098 Site: position = -149 score = 4.18361 sequence = GTGTGACAGGGCCGTAAA Site: position = -93 score = 5.08979 sequence = GCGTCACATTTTCGTAAC Gene: DESPIG_03036: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) |
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Desulfovibrio salexigens DSM 2638 Site: position = -115 score = 5.24263 sequence = GCGTAACAGGTTTGTAAC Gene: Desal_3473: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) |
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Desulfovibrio magneticus RS-1 Site: position = -100 score = 5.21768 sequence = GCGTCACCGGACCGTAAC Gene: DMR_38880: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) |
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Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) |
| pstC-2 |
Gene: DVU2478: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
Gene: DvMF_2566: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
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Desulfovibrio desulfuricans G20 Site: position = -124 score = 4.49211 sequence = GCTTCATCAAGCTGTAAC Gene: Dde_1061: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
Gene: Ddes_0565: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
Gene: DESPIG_03035: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
Gene: Desal_3472: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
Gene: DMR_38870: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
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Gene: Dbac_2680: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
Gene: Dret_0465: Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
Phosphate transport system permease protein PstC (TC 3.A.1.7.1) |
| pstA-2 |
Gene: DVU2479: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
Gene: DvMF_2567: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
Gene: Dde_1060: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
Gene: Ddes_0564: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
Gene: DESPIG_03034: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
Gene: Desal_3471: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
Gene: DMR_38860: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
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Gene: Dbac_2681: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
Gene: Dret_0466: Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
Phosphate transport system permease protein PstA (TC 3.A.1.7.1) |
| DvMF_2565 |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -122 score = 5.08348 sequence = GCGACACAGGATTGTAAC Gene: DvMF_2565: periplasmic phosphate binding protein |
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Desulfomicrobium baculatum DSM 4028 Site: position = -113 score = 5.56323 sequence = TTGTCACACCTCTGTCAC Site: position = -91 score = 4.06865 sequence = GCCTCAACATCCTGTAAC Gene: Dbac_2679: periplasmic phosphate binding protein |
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Desulfohalobium retbaense DSM 5692 Site: position = -267 score = 4.1868 sequence = TTGTTACCGCAATGTTAC Site: position = -96 score = 5.04538 sequence = TTGTCGCAGGATTGTCAC Gene: Dret_0464: periplasmic phosphate binding protein |
periplasmic phosphate binding protein |
| phoH |
Gene: DVU0442: Predicted ATPase related to phosphate starvation-inducible protein PhoH |
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Gene: Dde_1059: Predicted ATPase related to phosphate starvation-inducible protein PhoH |
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Gene: Desal_3186: Predicted ATPase related to phosphate starvation-inducible protein PhoH |
Gene: DMR_38850: Predicted ATPase related to phosphate starvation-inducible protein PhoH |
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Gene: Dbac_2706: Predicted ATPase related to phosphate starvation-inducible protein PhoH |
Gene: Dret_0907: Predicted ATPase related to phosphate starvation-inducible protein PhoH |
Predicted ATPase related to phosphate starvation-inducible protein PhoH |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |