Regulon of RpoN in Desulfohalobium retbaense DSM 5692

Properties
Regulator type:	Transcription factor
TF locus tag:	Dret_1601
Regulator family:	Sigma54
Regulation mode:
Biological process:	Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Regulog:	RpoN - Desulfovibrionales
Statistics of regulated genes:
- Genes	70
- Operons	15
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 487 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Sigma54
By pathway - Zinc homeostasis
By pathway - Nitrogen metabolism
By pathway - Motility
By pathway - Metabolite transport
By pathway - Intercellular adhesion
By pathway - Cell wall metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -95 Score: 4.9 Sequence: TTTGGCCCGATATTTGCTC Locus tag: Dret_0199 Name: adh Funciton: alcohol dehydrogenase, iron-containing( EC:1.1.1.1 ) Locus tag: Dret_0198 Name: hdrC Funciton: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1) Locus tag: Dret_0197 Name: hdrB Funciton: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1) Locus tag: Dret_0196 Name: hdrA Funciton: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1) Locus tag: Dret_0195 Name: hdrD Funciton: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1) Locus tag: Dret_0194 Name: null Funciton: Coenzyme F420-reducing hydrogenase, beta subunit Locus tag: Dret_0193 Name: null Funciton: heterodisulfide reductase, iron-sulfur binding subunit, putative Locus tag: Dret_0192 Name: null Funciton: Heterodisulfide reductase, cytochrome reductase subunit Locus tag: Dret_0191 Name: null Funciton: Rubrerythrin
	Dret_0199	adh	alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
	Dret_0198	hdrC	CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)
	Dret_0197	hdrB	CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)
	Dret_0196	hdrA	CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)
	Dret_0195	hdrD	CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1)
	Dret_0194		Coenzyme F420-reducing hydrogenase, beta subunit
	Dret_0193		heterodisulfide reductase, iron-sulfur binding subunit, putative
	Dret_0192		Heterodisulfide reductase, cytochrome reductase subunit
	Dret_0191		Rubrerythrin
Position: -147 Score: 4.6 Sequence: TTTGGTTTGCTTTTTGCTT Locus tag: Dret_1220 Name: null Funciton: membrane protein, putative Locus tag: Dret_1219 Name: null Funciton: hypothetical protein
	Dret_1220		membrane protein, putative
	Dret_1219		hypothetical protein
Position: -82 Score: 4.6 Sequence: ATCGGAACGGATATTGCTT Locus tag: Dret_0164 Name: null Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein Locus tag: Dret_0165 Name: null Funciton: iron-sulfur cluster-binding protein
	Dret_0164		4Fe-4S ferredoxin iron-sulfur binding domain protein
	Dret_0165		iron-sulfur cluster-binding protein
Position: -228 Score: 4.1 Sequence: TCAGGCATATAAATTGCTT Locus tag: Dret_0167 Name: null Funciton: cytochrome c family protein Locus tag: Dret_0166 Name: null Funciton: Cytochrome B561
	Dret_0167		cytochrome c family protein
	Dret_0166		Cytochrome B561
Position: -70 Score: 4.8 Sequence: ATTGGCCCCATCCTTGCTA Locus tag: Dret_0113 Name: amt Funciton: Ammonium transporter Locus tag: Dret_0112 Name: glnB Funciton: Nitrogen regulatory protein P-II
	Dret_0113	amt	Ammonium transporter
	Dret_0112	glnB	Nitrogen regulatory protein P-II
Position: -92 Score: 4.2 Sequence: GACGGAACGGTATTTGCCC Locus tag: Dret_0589 Name: flhF Funciton: Flagellar biosynthesis protein FlhF Locus tag: Dret_0590 Name: fleN Funciton: Flagellar synthesis regulator FleN Locus tag: Dret_0591 Name: fliA Funciton: RNA polymerase, sigma 28 subunit, FliA/WhiG Locus tag: Dret_0592 Name: null Funciton: methyl-accepting chemotaxis sensory transducer Locus tag: Dret_0593 Name: flgF Funciton: Flagellar basal-body rod protein FlgF Locus tag: Dret_0594 Name: flgG Funciton: Flagellar basal-body rod protein FlgG Locus tag: Dret_0595 Name: flgA Funciton: Flagellar basal-body P-ring formation protein FlgA Locus tag: Dret_0596 Name: flgH Funciton: Flagellar L-ring protein FlgH Locus tag: Dret_0597 Name: flgI Funciton: Flagellar P-ring protein FlgI Locus tag: Dret_0598 Name: flgJ Funciton: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
	Dret_0589	flhF	Flagellar biosynthesis protein FlhF
	Dret_0590	fleN	Flagellar synthesis regulator FleN
	Dret_0591	fliA	RNA polymerase, sigma 28 subunit, FliA/WhiG
	Dret_0592		methyl-accepting chemotaxis sensory transducer
	Dret_0593	flgF	Flagellar basal-body rod protein FlgF
	Dret_0594	flgG	Flagellar basal-body rod protein FlgG
	Dret_0595	flgA	Flagellar basal-body P-ring formation protein FlgA
	Dret_0596	flgH	Flagellar L-ring protein FlgH
	Dret_0597	flgI	Flagellar P-ring protein FlgI
	Dret_0598	flgJ	Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
Position: -90 Score: 4.5 Sequence: TATGGCATGGATATTGAAT Locus tag: Dret_1039 Name: lldP Funciton: L-lactate permease Locus tag: Dret_1038 Name: glcD Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Locus tag: Dret_1037 Name: glcF Funciton: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF Locus tag: Dret_1036 Name: por Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) Locus tag: Dret_1035 Name: pta Funciton: Phosphate acetyltransferase (EC 2.3.1.8) Locus tag: Dret_1034 Name: ackA Funciton: Acetate kinase (EC 2.7.2.1) Locus tag: Dret_1033 Name: DVU3031 Funciton: BioD-like N-terminal domain of phosphotransacetylase Locus tag: Dret_1032 Name: lldG Funciton: L-lactate dehydrogenase, hypothetical protein subunit LldG Locus tag: Dret_1031 Name: lldEF Funciton: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
	Dret_1039	lldP	L-lactate permease
	Dret_1038	glcD	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
	Dret_1037	glcF	Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
	Dret_1036	por	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
	Dret_1035	pta	Phosphate acetyltransferase (EC 2.3.1.8)
	Dret_1034	ackA	Acetate kinase (EC 2.7.2.1)
	Dret_1033	DVU3031	BioD-like N-terminal domain of phosphotransacetylase
	Dret_1032	lldG	L-lactate dehydrogenase, hypothetical protein subunit LldG
	Dret_1031	lldEF	L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
Position: -78 Score: 5 Sequence: TTTGGCACGCCCAATGCAT Locus tag: Dret_2390 Name: zraP Funciton: Zinc resistance-associated protein Locus tag: Dret_2391 Name: null Funciton: PAS/PAC sensor signal transduction histidine kinase Locus tag: Dret_2392 Name: null Funciton: two component, sigma54 specific, transcriptional regulator, Fis family
	Dret_2390	zraP	Zinc resistance-associated protein
	Dret_2391		PAS/PAC sensor signal transduction histidine kinase
	Dret_2392		two component, sigma54 specific, transcriptional regulator, Fis family
Position: -53 Score: 5.1 Sequence: TTTGGCACCTCTCTTGCCT Locus tag: Dret_2267 Name: amt Funciton: Ammonium transporter Locus tag: Dret_2268 Name: glnB Funciton: Nitrogen regulatory protein P-II Locus tag: Dret_2269 Name: glnD Funciton: [Protein-PII] uridylyltransferase (EC 2.7.7.59)
	Dret_2267	amt	Ammonium transporter
	Dret_2268	glnB	Nitrogen regulatory protein P-II
	Dret_2269	glnD	[Protein-PII] uridylyltransferase (EC 2.7.7.59)
Position: -40 Score: 4.9 Sequence: CGTGGAATGATTTTTGCTT Locus tag: Dret_2081 Name: lpxC Funciton: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
	Dret_2081	lpxC	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
Position: -210 Score: 4.6 Sequence: TTTGGCAAAGTTTGTGCAT Locus tag: Dret_1485 Name: ald Funciton: Alanine dehydrogenase (EC 1.4.1.1)
	Dret_1485	ald	Alanine dehydrogenase (EC 1.4.1.1)
Position: -51 Score: 4.5 Sequence: GCTGGCATAATTTATGCTA Locus tag: Dret_0578 Name: motA Funciton: Flagellar motor rotation protein MotA Locus tag: Dret_0579 Name: motB Funciton: Flagellar motor rotation protein MotB Locus tag: Dret_0580 Name: fliL Funciton: Flagellar basal body-associated protein FliL Locus tag: Dret_0581 Name: fliM Funciton: Flagellar motor switch protein FliM Locus tag: Dret_0582 Name: fliN Funciton: Flagellar motor switch protein FliN Locus tag: Dret_0583 Name: fliO Funciton: Flagellar biosynthesis protein FliO Locus tag: Dret_0584 Name: fliP Funciton: Flagellar biosynthesis protein FliP Locus tag: Dret_0585 Name: fliQ Funciton: Flagellar biosynthesis protein FliQ Locus tag: Dret_0586 Name: fliR Funciton: Flagellar biosynthesis protein FliR Locus tag: Dret_0587 Name: flhB Funciton: Flagellar biosynthesis protein FlhB Locus tag: Dret_0588 Name: flhA Funciton: Flagellar biosynthesis protein FlhA
	Dret_0578	motA	Flagellar motor rotation protein MotA
	Dret_0579	motB	Flagellar motor rotation protein MotB
	Dret_0580	fliL	Flagellar basal body-associated protein FliL
	Dret_0581	fliM	Flagellar motor switch protein FliM
	Dret_0582	fliN	Flagellar motor switch protein FliN
	Dret_0583	fliO	Flagellar biosynthesis protein FliO
	Dret_0584	fliP	Flagellar biosynthesis protein FliP
	Dret_0585	fliQ	Flagellar biosynthesis protein FliQ
	Dret_0586	fliR	Flagellar biosynthesis protein FliR
	Dret_0587	flhB	Flagellar biosynthesis protein FlhB
	Dret_0588	flhA	Flagellar biosynthesis protein FlhA
Position: -67 Score: 4.8 Sequence: ATCGGCACGGACATTGCTA Locus tag: Dret_0446 Name: null Funciton: hypothetical protein Locus tag: Dret_0445 Name: DVU2108 Funciton: Dinitrogenase iron-molybdenum cofactor biosynthesis protein Locus tag: Dret_0444 Name: null Funciton: putative cytoplasmic protein
	Dret_0446		hypothetical protein
	Dret_0445	DVU2108	Dinitrogenase iron-molybdenum cofactor biosynthesis protein
	Dret_0444		putative cytoplasmic protein
Position: -159 Score: 3.5 Sequence: TAGGGCTCAGGTGTTGCCT Locus tag: Dret_0653 Name: flgB Funciton: Flagellar basal-body rod protein FlgB Locus tag: Dret_0654 Name: flgC Funciton: Flagellar basal-body rod protein FlgC Locus tag: Dret_0655 Name: fliE Funciton: Flagellar hook-basal body complex protein FliE
	Dret_0653	flgB	Flagellar basal-body rod protein FlgB
	Dret_0654	flgC	Flagellar basal-body rod protein FlgC
	Dret_0655	fliE	Flagellar hook-basal body complex protein FliE
Position: -290 Score: 4.5 Sequence: ATTGGAGCACTTTTTGCTC Position: -130 Score: 4.7 Sequence: TATGGCGTGGTATTTGCAT Locus tag: Dret_0569 Name: fliF Funciton: Flagellar M-ring protein FliF Locus tag: Dret_0570 Name: fliG Funciton: Flagellar motor switch protein FliG Locus tag: Dret_0571 Name: fliH Funciton: Flagellar assembly protein FliH Locus tag: Dret_0572 Name: fliI Funciton: flagellar protein export ATPase FliI Locus tag: Dret_0573 Name: fliJ Funciton: Flagellar biosynthesis chaperone FliJ Locus tag: Dret_0574 Name: flbB Funciton: Flagellar protein FlbB Locus tag: Dret_0575 Name: fliK Funciton: flagellar hook-length control protein Locus tag: Dret_0576 Name: flgD Funciton: flagellar hook capping protein Locus tag: Dret_0577 Name: flgE Funciton: fagellar hook-basal body protein
	Dret_0569	fliF	Flagellar M-ring protein FliF
	Dret_0570	fliG	Flagellar motor switch protein FliG
	Dret_0571	fliH	Flagellar assembly protein FliH
	Dret_0572	fliI	flagellar protein export ATPase FliI
	Dret_0573	fliJ	Flagellar biosynthesis chaperone FliJ
	Dret_0574	flbB	Flagellar protein FlbB
	Dret_0575	fliK	flagellar hook-length control protein
	Dret_0576	flgD	flagellar hook capping protein
	Dret_0577	flgE	fagellar hook-basal body protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of RpoN in Desulfohalobium retbaense DSM 5692

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --