Regulon of RpoN in Desulfohalobium retbaense DSM 5692
| Regulator type: | Transcription factor |
| TF locus tag: | Dret_1601 |
| Regulator family: | Sigma54 |
| Regulation mode: | |
| Biological process: | Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism |
| Effector: | |
| Regulog: | RpoN - Desulfovibrionales |
| Statistics of regulated genes: | |
| - Genes | 70 |
| - Operons | 15 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Sigma54
- By pathway - Zinc homeostasis
- By pathway - Nitrogen metabolism
- By pathway - Motility
- By pathway - Metabolite transport
- By pathway - Intercellular adhesion
- By pathway - Cell wall metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -95
Score: 4.9 Sequence: TTTGGCCCGATATTTGCTC
Locus tag: Dret_0199
Name: adh Funciton: alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
Locus tag: Dret_0198
Name: hdrC Funciton: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)
Locus tag: Dret_0197
Name: hdrB Funciton: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)
Locus tag: Dret_0196
Name: hdrA Funciton: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)
Locus tag: Dret_0195
Name: hdrD Funciton: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1)
Locus tag: Dret_0194
Name: null Funciton: Coenzyme F420-reducing hydrogenase, beta subunit
Locus tag: Dret_0193
Name: null Funciton: heterodisulfide reductase, iron-sulfur binding subunit, putative
Locus tag: Dret_0192
Name: null Funciton: Heterodisulfide reductase, cytochrome reductase subunit
Locus tag: Dret_0191
Name: null Funciton: Rubrerythrin |
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adh
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alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
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hdrC
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CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)
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hdrB
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CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)
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hdrA
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CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)
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hdrD
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CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1)
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Coenzyme F420-reducing hydrogenase, beta subunit
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heterodisulfide reductase, iron-sulfur binding subunit, putative
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Heterodisulfide reductase, cytochrome reductase subunit
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Rubrerythrin
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Position: -147
Score: 4.6 Sequence: TTTGGTTTGCTTTTTGCTT
Locus tag: Dret_1220
Name: null Funciton: membrane protein, putative
Locus tag: Dret_1219
Name: null Funciton: hypothetical protein |
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membrane protein, putative
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hypothetical protein
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Position: -82
Score: 4.6 Sequence: ATCGGAACGGATATTGCTT
Locus tag: Dret_0164
Name: null Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: Dret_0165
Name: null Funciton: iron-sulfur cluster-binding protein |
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4Fe-4S ferredoxin iron-sulfur binding domain protein
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iron-sulfur cluster-binding protein
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Position: -228
Score: 4.1 Sequence: TCAGGCATATAAATTGCTT
Locus tag: Dret_0167
Name: null Funciton: cytochrome c family protein
Locus tag: Dret_0166
Name: null Funciton: Cytochrome B561 |
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cytochrome c family protein
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Cytochrome B561
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Position: -70
Score: 4.8 Sequence: ATTGGCCCCATCCTTGCTA
Locus tag: Dret_0113
Name: amt Funciton: Ammonium transporter
Locus tag: Dret_0112
Name: glnB Funciton: Nitrogen regulatory protein P-II |
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amt
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Ammonium transporter
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glnB
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Nitrogen regulatory protein P-II
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Position: -92
Score: 4.2 Sequence: GACGGAACGGTATTTGCCC
Locus tag: Dret_0589
Name: flhF Funciton: Flagellar biosynthesis protein FlhF
Locus tag: Dret_0590
Name: fleN Funciton: Flagellar synthesis regulator FleN
Locus tag: Dret_0591
Name: fliA Funciton: RNA polymerase, sigma 28 subunit, FliA/WhiG
Locus tag: Dret_0592
Name: null Funciton: methyl-accepting chemotaxis sensory transducer
Locus tag: Dret_0593
Name: flgF Funciton: Flagellar basal-body rod protein FlgF
Locus tag: Dret_0594
Name: flgG Funciton: Flagellar basal-body rod protein FlgG
Locus tag: Dret_0595
Name: flgA Funciton: Flagellar basal-body P-ring formation protein FlgA
Locus tag: Dret_0596
Name: flgH Funciton: Flagellar L-ring protein FlgH
Locus tag: Dret_0597
Name: flgI Funciton: Flagellar P-ring protein FlgI
Locus tag: Dret_0598
Name: flgJ Funciton: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) |
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flhF
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Flagellar biosynthesis protein FlhF
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fleN
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Flagellar synthesis regulator FleN
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fliA
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RNA polymerase, sigma 28 subunit, FliA/WhiG
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methyl-accepting chemotaxis sensory transducer
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flgF
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Flagellar basal-body rod protein FlgF
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flgG
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Flagellar basal-body rod protein FlgG
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flgA
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Flagellar basal-body P-ring formation protein FlgA
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flgH
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Flagellar L-ring protein FlgH
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flgI
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Flagellar P-ring protein FlgI
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flgJ
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Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
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Position: -90
Score: 4.5 Sequence: TATGGCATGGATATTGAAT
Locus tag: Dret_1039
Name: lldP Funciton: L-lactate permease
Locus tag: Dret_1038
Name: glcD Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Locus tag: Dret_1037
Name: glcF Funciton: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Locus tag: Dret_1036
Name: por Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Locus tag: Dret_1035
Name: pta Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: Dret_1034
Name: ackA Funciton: Acetate kinase (EC 2.7.2.1)
Locus tag: Dret_1033
Name: DVU3031 Funciton: BioD-like N-terminal domain of phosphotransacetylase
Locus tag: Dret_1032
Name: lldG Funciton: L-lactate dehydrogenase, hypothetical protein subunit LldG
Locus tag: Dret_1031
Name: lldEF Funciton: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
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lldP
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L-lactate permease
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glcD
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Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
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glcF
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Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
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por
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Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
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pta
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Phosphate acetyltransferase (EC 2.3.1.8)
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ackA
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Acetate kinase (EC 2.7.2.1)
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DVU3031
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BioD-like N-terminal domain of phosphotransacetylase
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lldG
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L-lactate dehydrogenase, hypothetical protein subunit LldG
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lldEF
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L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
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Position: -78
Score: 5 Sequence: TTTGGCACGCCCAATGCAT
Locus tag: Dret_2390
Name: zraP Funciton: Zinc resistance-associated protein
Locus tag: Dret_2391
Name: null Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: Dret_2392
Name: null Funciton: two component, sigma54 specific, transcriptional regulator, Fis family |
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zraP
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Zinc resistance-associated protein
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PAS/PAC sensor signal transduction histidine kinase
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two component, sigma54 specific, transcriptional regulator, Fis family
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Position: -53
Score: 5.1 Sequence: TTTGGCACCTCTCTTGCCT
Locus tag: Dret_2267
Name: amt Funciton: Ammonium transporter
Locus tag: Dret_2268
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: Dret_2269
Name: glnD Funciton: [Protein-PII] uridylyltransferase (EC 2.7.7.59) |
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amt
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Ammonium transporter
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glnB
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Nitrogen regulatory protein P-II
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glnD
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[Protein-PII] uridylyltransferase (EC 2.7.7.59)
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Position: -40
Score: 4.9 Sequence: CGTGGAATGATTTTTGCTT
Locus tag: Dret_2081
Name: lpxC Funciton: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) |
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lpxC
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UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
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Position: -210
Score: 4.6 Sequence: TTTGGCAAAGTTTGTGCAT
Locus tag: Dret_1485
Name: ald Funciton: Alanine dehydrogenase (EC 1.4.1.1) |
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ald
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Alanine dehydrogenase (EC 1.4.1.1)
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Position: -51
Score: 4.5 Sequence: GCTGGCATAATTTATGCTA
Locus tag: Dret_0578
Name: motA Funciton: Flagellar motor rotation protein MotA
Locus tag: Dret_0579
Name: motB Funciton: Flagellar motor rotation protein MotB
Locus tag: Dret_0580
Name: fliL Funciton: Flagellar basal body-associated protein FliL
Locus tag: Dret_0581
Name: fliM Funciton: Flagellar motor switch protein FliM
Locus tag: Dret_0582
Name: fliN Funciton: Flagellar motor switch protein FliN
Locus tag: Dret_0583
Name: fliO Funciton: Flagellar biosynthesis protein FliO
Locus tag: Dret_0584
Name: fliP Funciton: Flagellar biosynthesis protein FliP
Locus tag: Dret_0585
Name: fliQ Funciton: Flagellar biosynthesis protein FliQ
Locus tag: Dret_0586
Name: fliR Funciton: Flagellar biosynthesis protein FliR
Locus tag: Dret_0587
Name: flhB Funciton: Flagellar biosynthesis protein FlhB
Locus tag: Dret_0588
Name: flhA Funciton: Flagellar biosynthesis protein FlhA |
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motA
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Flagellar motor rotation protein MotA
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motB
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Flagellar motor rotation protein MotB
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fliL
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Flagellar basal body-associated protein FliL
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fliM
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Flagellar motor switch protein FliM
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fliN
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Flagellar motor switch protein FliN
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fliO
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Flagellar biosynthesis protein FliO
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fliP
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Flagellar biosynthesis protein FliP
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fliQ
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Flagellar biosynthesis protein FliQ
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fliR
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Flagellar biosynthesis protein FliR
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flhB
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Flagellar biosynthesis protein FlhB
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flhA
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Flagellar biosynthesis protein FlhA
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Position: -67
Score: 4.8 Sequence: ATCGGCACGGACATTGCTA
Locus tag: Dret_0446
Name: null Funciton: hypothetical protein
Locus tag: Dret_0445
Name: DVU2108 Funciton: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Locus tag: Dret_0444
Name: null Funciton: putative cytoplasmic protein |
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hypothetical protein
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DVU2108
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Dinitrogenase iron-molybdenum cofactor biosynthesis protein
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putative cytoplasmic protein
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Position: -159
Score: 3.5 Sequence: TAGGGCTCAGGTGTTGCCT
Locus tag: Dret_0653
Name: flgB Funciton: Flagellar basal-body rod protein FlgB
Locus tag: Dret_0654
Name: flgC Funciton: Flagellar basal-body rod protein FlgC
Locus tag: Dret_0655
Name: fliE Funciton: Flagellar hook-basal body complex protein FliE |
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flgB
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Flagellar basal-body rod protein FlgB
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flgC
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Flagellar basal-body rod protein FlgC
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fliE
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Flagellar hook-basal body complex protein FliE
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Position: -290
Score: 4.5 Sequence: ATTGGAGCACTTTTTGCTC
Position: -130
Score: 4.7 Sequence: TATGGCGTGGTATTTGCAT
Locus tag: Dret_0569
Name: fliF Funciton: Flagellar M-ring protein FliF
Locus tag: Dret_0570
Name: fliG Funciton: Flagellar motor switch protein FliG
Locus tag: Dret_0571
Name: fliH Funciton: Flagellar assembly protein FliH
Locus tag: Dret_0572
Name: fliI Funciton: flagellar protein export ATPase FliI
Locus tag: Dret_0573
Name: fliJ Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: Dret_0574
Name: flbB Funciton: Flagellar protein FlbB
Locus tag: Dret_0575
Name: fliK Funciton: flagellar hook-length control protein
Locus tag: Dret_0576
Name: flgD Funciton: flagellar hook capping protein
Locus tag: Dret_0577
Name: flgE Funciton: fagellar hook-basal body protein |
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fliF
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Flagellar M-ring protein FliF
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fliG
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Flagellar motor switch protein FliG
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fliH
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Flagellar assembly protein FliH
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fliI
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flagellar protein export ATPase FliI
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fliJ
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Flagellar biosynthesis chaperone FliJ
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flbB
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Flagellar protein FlbB
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fliK
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flagellar hook-length control protein
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flgD
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flagellar hook capping protein
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flgE
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fagellar hook-basal body protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |