Regulog RpoH - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Sigma70 |
| Regulation mode: | |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Sigma70
- By effector - Heat shock
- By pathway - Heat shock response
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 6 | 4 |
| Desulfovibrio vulgaris str. Miyazaki F | ||
| Desulfovibrio desulfuricans G20 | 7 | 3 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 3 | 2 |
| Desulfovibrio piger ATCC 29098 | 4 | 2 |
| Desulfovibrio salexigens DSM 2638 | 2 | 1 |
| Desulfovibrio magneticus RS-1 | 6 | 3 |
| Lawsonia intracellularis PHE/MN1-00 | 1 | 1 |
| Desulfomicrobium baculatum DSM 4028 | ||
| Desulfohalobium retbaense DSM 5692 | 4 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| clpP |
Gene: DVU1335: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
Gene: DvMF_0110: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
*
Desulfovibrio desulfuricans G20 Site: position = -81 score = 6.57255 sequence = CTTGAAC-(12)-CCCGAT Gene: Dde_2220: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -159 score = 5.38954 sequence = CCCGAAA-(11)-GCCGAT Gene: Ddes_0691: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
Gene: DESPIG_02679: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
Gene: Desal_2062: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
*
Desulfovibrio magneticus RS-1 Site: position = -77 score = 5.23005 sequence = CCGGAAG-(11)-CCCGAT Gene: DMR_28170: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
Gene: LI0794: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
Gene: Dbac_0199: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
Gene: Dret_0511: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) |
| clpX |
*
Desulfovibrio vulgaris Hildenborough Site: position = -91 score = 5.51336 sequence = CCTGAAG-(16)-CCTGAT Gene: DVU1336: ATP-dependent Clp protease, ATP-binding subunit ClpX |
2
Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0111: ATP-dependent Clp protease, ATP-binding subunit ClpX Gene: DvMF_0231: ATP-dependent Clp protease, ATP-binding subunit ClpX |
*
Desulfovibrio desulfuricans G20 Site: position = -135 score = 6.81898 sequence = CTTGAAA-(14)-ACCGAT Gene: Dde_2219: ATP-dependent Clp protease, ATP-binding subunit ClpX |
Gene: Ddes_0692: ATP-dependent Clp protease, ATP-binding subunit ClpX |
Gene: DESPIG_02680: ATP-dependent Clp protease, ATP-binding subunit ClpX |
Gene: Desal_2061: ATP-dependent Clp protease, ATP-binding subunit ClpX |
Gene: DMR_28160: ATP-dependent Clp protease, ATP-binding subunit ClpX |
Gene: LI0795: ATP-dependent Clp protease, ATP-binding subunit ClpX |
Gene: Dbac_0200: ATP-dependent Clp protease, ATP-binding subunit ClpX |
*
Desulfohalobium retbaense DSM 5692 Site: position = -186 score = 4.82531 sequence = CTGGAAA-(14)-ACTGAT Gene: Dret_0512: ATP-dependent Clp protease, ATP-binding subunit ClpX |
ATP-dependent Clp protease, ATP-binding subunit ClpX |
| lon |
Gene: DVU1337: ATP-dependent protease La (EC 3.4.21.53) Type I |
Gene: DvMF_0112: ATP-dependent protease La (EC 3.4.21.53) Type I |
Gene: Dde_2218: ATP-dependent protease La (EC 3.4.21.53) Type I |
Gene: Ddes_0694: ATP-dependent protease La (EC 3.4.21.53) Type I |
Gene: DESPIG_02681: ATP-dependent protease La (EC 3.4.21.53) Type I |
Gene: Desal_2059: ATP-dependent protease La (EC 3.4.21.53) Type I |
*
Desulfovibrio magneticus RS-1 Site: position = -135 score = 5.90084 sequence = CCTGAAG-(12)-CCGGAT Gene: DMR_28150: ATP-dependent protease La (EC 3.4.21.53) Type I |
Gene: LI0796: ATP-dependent protease La (EC 3.4.21.53) Type I |
Gene: Dbac_0201: ATP-dependent protease La (EC 3.4.21.53) Type I |
Gene: Dret_0513: ATP-dependent protease La (EC 3.4.21.53) Type I |
ATP-dependent protease La (EC 3.4.21.53) Type I |
| CRON 2. | |||||||||||
| Dde_0246 |
|
|
*
Desulfovibrio desulfuricans G20 Site: position = -271 score = 4.28777 sequence = CCGGAAA-(11)-GCACAT Gene: Dde_0246: hypothetical protein |
|
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Gene: Desal_2589: hypothetical protein |
|
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|
hypothetical protein |
| rpoZ |
*
Desulfovibrio vulgaris Hildenborough Site: position = -392 score = 5.23005 sequence = CCGGAAG-(11)-CCCGAT Gene: DVU3242: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
Gene: DvMF_2294: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
Gene: Dde_0247: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -180 score = 6.7696 sequence = CTTGACA-(12)-GCCTAT Gene: Ddes_2161: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
*
Desulfovibrio piger ATCC 29098 Site: position = -147 score = 6.08381 sequence = CTTGACA-(12)-ACCAAT Gene: DESPIG_02499: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
Gene: Desal_2588: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
Gene: DMR_19960: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
|
Gene: Dbac_3475: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
Gene: Dret_1081: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) |
| dnaJ |
Gene: DVU3243: Chaperone protein DnaJ |
Gene: DvMF_2295: Chaperone protein DnaJ |
*
Desulfovibrio desulfuricans G20 Site: position = 99 score = 5.21088 sequence = CCTGACA-(14)-CCCGAA Gene: Dde_0248: Chaperone protein DnaJ |
Gene: Ddes_2162: Chaperone protein DnaJ |
Gene: DESPIG_02498: Chaperone protein DnaJ |
Gene: Desal_2587: Chaperone protein DnaJ |
*
Desulfovibrio magneticus RS-1 Site: position = -206 score = 5.52456 sequence = CTGGAAA-(16)-CCTCAT Gene: DMR_19970: Chaperone protein DnaJ |
*
Lawsonia intracellularis PHE/MN1-00 Site: position = -71 score = 6.52408 sequence = CCTGAAG-(16)-CCCTAT Gene: LI0685: Chaperone protein DnaJ |
Gene: Dbac_3476: Chaperone protein DnaJ |
Gene: Dret_1082: Chaperone protein DnaJ |
Chaperone protein DnaJ |
| Dde_0249 |
|
|
Gene: Dde_0249: Molybdenum cofactor biosynthesis enzyme |
|
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Gene: Desal_2586: Molybdenum cofactor biosynthesis enzyme |
|
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Gene: Dbac_3477: Molybdenum cofactor biosynthesis enzyme |
Gene: Dret_1083: Molybdenum cofactor biosynthesis enzyme |
Molybdenum cofactor biosynthesis enzyme |
| DESPIG_02497 |
|
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|
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Gene: DESPIG_02497: hypothetical protein |
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|
hypothetical protein |
| CRON 3. | |||||||||||
| groES |
Gene: DVU1977: Heat shock protein 60 family co-chaperone GroES |
Gene: DvMF_3063: Heat shock protein 60 family co-chaperone GroES |
Gene: Dde_2474: Heat shock protein 60 family co-chaperone GroES |
Gene: Ddes_1547: Heat shock protein 60 family co-chaperone GroES |
Gene: DESPIG_00652: Heat shock protein 60 family co-chaperone GroES |
*
Desulfovibrio salexigens DSM 2638 Site: position = -259 score = 6.01471 sequence = CTTGAAA-(11)-GCACAT Gene: Desal_3023: Heat shock protein 60 family co-chaperone GroES |
*
Desulfovibrio magneticus RS-1 Site: position = -55 score = 3.72957 sequence = CCGCAAG-(12)-GCCAAT Gene: DMR_02720: Heat shock protein 60 family co-chaperone GroES |
Gene: LI0624: Heat shock protein 60 family co-chaperone GroES |
Gene: Dbac_2625: Heat shock protein 60 family co-chaperone GroES |
|
Heat shock protein 60 family co-chaperone GroES |
| groEL |
Gene: DVU1976: Heat shock protein 60 family chaperone GroEL |
Gene: DvMF_3064: Heat shock protein 60 family chaperone GroEL |
Gene: Dde_2473: Heat shock protein 60 family chaperone GroEL |
Gene: Ddes_1548: Heat shock protein 60 family chaperone GroEL |
Gene: DESPIG_00651: Heat shock protein 60 family chaperone GroEL |
Gene: Desal_3024: Heat shock protein 60 family chaperone GroEL |
Gene: DMR_02710: Heat shock protein 60 family chaperone GroEL |
Gene: LI0625: Heat shock protein 60 family chaperone GroEL |
Gene: Dbac_2624: Heat shock protein 60 family chaperone GroEL |
*
Desulfohalobium retbaense DSM 5692 Site: position = -242 score = 5.34006 sequence = CCCGACA-(13)-GCCCAT Gene: Dret_2176: Heat shock protein 60 family chaperone GroEL |
Heat shock protein 60 family chaperone GroEL |
| CRON 4. | |||||||||||
| htpG |
*
Desulfovibrio vulgaris Hildenborough Site: position = -54 score = 6.18698 sequence = CTTGAAA-(14)-GCCCAA Gene: DVU2643: Chaperone Hsp90, heat shock protein C 62.5 |
Gene: DvMF_1117: Chaperone Hsp90, heat shock protein C 62.5 |
Gene: Dde_1147: Chaperone Hsp90, heat shock protein C 62.5 |
Gene: Ddes_2197: Chaperone Hsp90, heat shock protein C 62.5 |
Gene: DESPIG_02208: Chaperone Hsp90, heat shock protein C 62.5 |
Gene: Desal_3429: Chaperone Hsp90, heat shock protein C 62.5 |
Gene: DMR_11440: Chaperone Hsp90, heat shock protein C 62.5 |
|
Gene: Dbac_1549: Chaperone Hsp90, heat shock protein C 62.5 |
Gene: Dret_0752: Chaperone Hsp90, heat shock protein C 62.5 |
Chaperone Hsp90, heat shock protein C 62.5 |
| CRON 5. | |||||||||||
| rpoH |
*
Desulfovibrio vulgaris Hildenborough Site: position = -195 score = 6.16386 sequence = CCTGAAA-(14)-CCGGAT Gene: DVU1584: Heat shock sigma factor RpoH (rpoH) |
Gene: DvMF_0477: Heat shock sigma factor RpoH (rpoH) |
Gene: Dde_2116: Heat shock sigma factor RpoH (rpoH) |
Gene: Ddes_1443: Heat shock sigma factor RpoH (rpoH) |
*
Desulfovibrio piger ATCC 29098 Site: position = -247 score = 5.52826 sequence = CCGGAAG-(13)-CCCCAT Gene: DESPIG_01221: Heat shock sigma factor RpoH (rpoH) |
Gene: Desal_3662: Heat shock sigma factor RpoH (rpoH) |
Gene: DMR_21120: Heat shock sigma factor RpoH (rpoH) |
Gene: LI0613: Heat shock sigma factor RpoH (rpoH) |
Gene: Dbac_1859: Heat shock sigma factor RpoH (rpoH) |
Gene: Dret_0858: Heat shock sigma factor RpoH (rpoH) |
Heat shock sigma factor RpoH (rpoH) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |