Regulog RpoH - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	Sigma70
Regulation mode:
Biological process:	Heat shock response
Effector:	Heat shock
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 20 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Sigma70
By effector - Heat shock
By pathway - Heat shock response

Statistics of regulated genes
Genome	Genes	Operons
Desulfovibrio vulgaris Hildenborough	6	4
Desulfovibrio vulgaris str. Miyazaki F
Desulfovibrio desulfuricans G20	7	3
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	3	2
Desulfovibrio piger ATCC 29098	4	2
Desulfovibrio salexigens DSM 2638	2	1
Desulfovibrio magneticus RS-1	6	3
Lawsonia intracellularis PHE/MN1-00	1	1
Desulfomicrobium baculatum DSM 4028
Desulfohalobium retbaense DSM 5692	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
clpP	Desulfovibrio vulgaris Hildenborough Gene: DVU1335: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0110: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	* Desulfovibrio desulfuricans G20 Site: position = -81 score = 6.57255 sequence = CTTGAAC-(12)-CCCGAT Gene: Dde_2220: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -159 score = 5.38954 sequence = CCCGAAA-(11)-GCCGAT Gene: Ddes_0691: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02679: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Desulfovibrio salexigens DSM 2638 Gene: Desal_2062: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	* Desulfovibrio magneticus RS-1 Site: position = -77 score = 5.23005 sequence = CCGGAAG-(11)-CCCGAT Gene: DMR_28170: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0794: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0199: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	Desulfohalobium retbaense DSM 5692 Gene: Dret_0511: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
clpX	* Desulfovibrio vulgaris Hildenborough Site: position = -91 score = 5.51336 sequence = CCTGAAG-(16)-CCTGAT Gene: DVU1336: ATP-dependent Clp protease, ATP-binding subunit ClpX	2 Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0111: ATP-dependent Clp protease, ATP-binding subunit ClpX Gene: DvMF_0231: ATP-dependent Clp protease, ATP-binding subunit ClpX	* Desulfovibrio desulfuricans G20 Site: position = -135 score = 6.81898 sequence = CTTGAAA-(14)-ACCGAT Gene: Dde_2219: ATP-dependent Clp protease, ATP-binding subunit ClpX	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0692: ATP-dependent Clp protease, ATP-binding subunit ClpX	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02680: ATP-dependent Clp protease, ATP-binding subunit ClpX	Desulfovibrio salexigens DSM 2638 Gene: Desal_2061: ATP-dependent Clp protease, ATP-binding subunit ClpX	Desulfovibrio magneticus RS-1 Gene: DMR_28160: ATP-dependent Clp protease, ATP-binding subunit ClpX	Lawsonia intracellularis PHE/MN1-00 Gene: LI0795: ATP-dependent Clp protease, ATP-binding subunit ClpX	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0200: ATP-dependent Clp protease, ATP-binding subunit ClpX	* Desulfohalobium retbaense DSM 5692 Site: position = -186 score = 4.82531 sequence = CTGGAAA-(14)-ACTGAT Gene: Dret_0512: ATP-dependent Clp protease, ATP-binding subunit ClpX	ATP-dependent Clp protease, ATP-binding subunit ClpX
lon	Desulfovibrio vulgaris Hildenborough Gene: DVU1337: ATP-dependent protease La (EC 3.4.21.53) Type I	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0112: ATP-dependent protease La (EC 3.4.21.53) Type I	Desulfovibrio desulfuricans G20 Gene: Dde_2218: ATP-dependent protease La (EC 3.4.21.53) Type I	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0694: ATP-dependent protease La (EC 3.4.21.53) Type I	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02681: ATP-dependent protease La (EC 3.4.21.53) Type I	Desulfovibrio salexigens DSM 2638 Gene: Desal_2059: ATP-dependent protease La (EC 3.4.21.53) Type I	* Desulfovibrio magneticus RS-1 Site: position = -135 score = 5.90084 sequence = CCTGAAG-(12)-CCGGAT Gene: DMR_28150: ATP-dependent protease La (EC 3.4.21.53) Type I	Lawsonia intracellularis PHE/MN1-00 Gene: LI0796: ATP-dependent protease La (EC 3.4.21.53) Type I	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0201: ATP-dependent protease La (EC 3.4.21.53) Type I	Desulfohalobium retbaense DSM 5692 Gene: Dret_0513: ATP-dependent protease La (EC 3.4.21.53) Type I	ATP-dependent protease La (EC 3.4.21.53) Type I

CRON 2.
Dde_0246	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	* Desulfovibrio desulfuricans G20 Site: position = -271 score = 4.28777 sequence = CCGGAAA-(11)-GCACAT Gene: Dde_0246: hypothetical protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_2589: hypothetical protein	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	hypothetical protein
rpoZ	* Desulfovibrio vulgaris Hildenborough Site: position = -392 score = 5.23005 sequence = CCGGAAG-(11)-CCCGAT Gene: DVU3242: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2294: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	Desulfovibrio desulfuricans G20 Gene: Dde_0247: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -180 score = 6.7696 sequence = CTTGACA-(12)-GCCTAT Gene: Ddes_2161: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	* Desulfovibrio piger ATCC 29098 Site: position = -147 score = 6.08381 sequence = CTTGACA-(12)-ACCAAT Gene: DESPIG_02499: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	Desulfovibrio salexigens DSM 2638 Gene: Desal_2588: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	Desulfovibrio magneticus RS-1 Gene: DMR_19960: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_3475: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	Desulfohalobium retbaense DSM 5692 Gene: Dret_1081: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)
dnaJ	Desulfovibrio vulgaris Hildenborough Gene: DVU3243: Chaperone protein DnaJ	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2295: Chaperone protein DnaJ	* Desulfovibrio desulfuricans G20 Site: position = 99 score = 5.21088 sequence = CCTGACA-(14)-CCCGAA Gene: Dde_0248: Chaperone protein DnaJ	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2162: Chaperone protein DnaJ	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02498: Chaperone protein DnaJ	Desulfovibrio salexigens DSM 2638 Gene: Desal_2587: Chaperone protein DnaJ	* Desulfovibrio magneticus RS-1 Site: position = -206 score = 5.52456 sequence = CTGGAAA-(16)-CCTCAT Gene: DMR_19970: Chaperone protein DnaJ	* Lawsonia intracellularis PHE/MN1-00 Site: position = -71 score = 6.52408 sequence = CCTGAAG-(16)-CCCTAT Gene: LI0685: Chaperone protein DnaJ	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_3476: Chaperone protein DnaJ	Desulfohalobium retbaense DSM 5692 Gene: Dret_1082: Chaperone protein DnaJ	Chaperone protein DnaJ
Dde_0249	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20 Gene: Dde_0249: Molybdenum cofactor biosynthesis enzyme	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_2586: Molybdenum cofactor biosynthesis enzyme	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_3477: Molybdenum cofactor biosynthesis enzyme	Desulfohalobium retbaense DSM 5692 Gene: Dret_1083: Molybdenum cofactor biosynthesis enzyme	Molybdenum cofactor biosynthesis enzyme
DESPIG_02497	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02497: hypothetical protein	Desulfovibrio salexigens DSM 2638	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	hypothetical protein

CRON 3.
groES	Desulfovibrio vulgaris Hildenborough Gene: DVU1977: Heat shock protein 60 family co-chaperone GroES	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_3063: Heat shock protein 60 family co-chaperone GroES	Desulfovibrio desulfuricans G20 Gene: Dde_2474: Heat shock protein 60 family co-chaperone GroES	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1547: Heat shock protein 60 family co-chaperone GroES	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00652: Heat shock protein 60 family co-chaperone GroES	* Desulfovibrio salexigens DSM 2638 Site: position = -259 score = 6.01471 sequence = CTTGAAA-(11)-GCACAT Gene: Desal_3023: Heat shock protein 60 family co-chaperone GroES	* Desulfovibrio magneticus RS-1 Site: position = -55 score = 3.72957 sequence = CCGCAAG-(12)-GCCAAT Gene: DMR_02720: Heat shock protein 60 family co-chaperone GroES	Lawsonia intracellularis PHE/MN1-00 Gene: LI0624: Heat shock protein 60 family co-chaperone GroES	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2625: Heat shock protein 60 family co-chaperone GroES	Desulfohalobium retbaense DSM 5692	Heat shock protein 60 family co-chaperone GroES
groEL	Desulfovibrio vulgaris Hildenborough Gene: DVU1976: Heat shock protein 60 family chaperone GroEL	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_3064: Heat shock protein 60 family chaperone GroEL	Desulfovibrio desulfuricans G20 Gene: Dde_2473: Heat shock protein 60 family chaperone GroEL	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1548: Heat shock protein 60 family chaperone GroEL	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00651: Heat shock protein 60 family chaperone GroEL	Desulfovibrio salexigens DSM 2638 Gene: Desal_3024: Heat shock protein 60 family chaperone GroEL	Desulfovibrio magneticus RS-1 Gene: DMR_02710: Heat shock protein 60 family chaperone GroEL	Lawsonia intracellularis PHE/MN1-00 Gene: LI0625: Heat shock protein 60 family chaperone GroEL	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2624: Heat shock protein 60 family chaperone GroEL	* Desulfohalobium retbaense DSM 5692 Site: position = -242 score = 5.34006 sequence = CCCGACA-(13)-GCCCAT Gene: Dret_2176: Heat shock protein 60 family chaperone GroEL	Heat shock protein 60 family chaperone GroEL

CRON 4.
htpG	* Desulfovibrio vulgaris Hildenborough Site: position = -54 score = 6.18698 sequence = CTTGAAA-(14)-GCCCAA Gene: DVU2643: Chaperone Hsp90, heat shock protein C 62.5	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1117: Chaperone Hsp90, heat shock protein C 62.5	Desulfovibrio desulfuricans G20 Gene: Dde_1147: Chaperone Hsp90, heat shock protein C 62.5	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2197: Chaperone Hsp90, heat shock protein C 62.5	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02208: Chaperone Hsp90, heat shock protein C 62.5	Desulfovibrio salexigens DSM 2638 Gene: Desal_3429: Chaperone Hsp90, heat shock protein C 62.5	Desulfovibrio magneticus RS-1 Gene: DMR_11440: Chaperone Hsp90, heat shock protein C 62.5	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1549: Chaperone Hsp90, heat shock protein C 62.5	Desulfohalobium retbaense DSM 5692 Gene: Dret_0752: Chaperone Hsp90, heat shock protein C 62.5	Chaperone Hsp90, heat shock protein C 62.5

CRON 5.
rpoH	* Desulfovibrio vulgaris Hildenborough Site: position = -195 score = 6.16386 sequence = CCTGAAA-(14)-CCGGAT Gene: DVU1584: Heat shock sigma factor RpoH (rpoH)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0477: Heat shock sigma factor RpoH (rpoH)	Desulfovibrio desulfuricans G20 Gene: Dde_2116: Heat shock sigma factor RpoH (rpoH)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1443: Heat shock sigma factor RpoH (rpoH)	* Desulfovibrio piger ATCC 29098 Site: position = -247 score = 5.52826 sequence = CCGGAAG-(13)-CCCCAT Gene: DESPIG_01221: Heat shock sigma factor RpoH (rpoH)	Desulfovibrio salexigens DSM 2638 Gene: Desal_3662: Heat shock sigma factor RpoH (rpoH)	Desulfovibrio magneticus RS-1 Gene: DMR_21120: Heat shock sigma factor RpoH (rpoH)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0613: Heat shock sigma factor RpoH (rpoH)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1859: Heat shock sigma factor RpoH (rpoH)	Desulfohalobium retbaense DSM 5692 Gene: Dret_0858: Heat shock sigma factor RpoH (rpoH)	Heat shock sigma factor RpoH (rpoH)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RpoH - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --