Regulog DVU3023 - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:
Biological process:	Lactate utilization
Effector:	Lactate
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Fis
By effector - Lactate
By pathway - Lactate utilization

Statistics of regulated genes
Genome	Genes	Operons
Desulfohalobium retbaense DSM 5692	9	1
Desulfomicrobium baculatum DSM 4028	6	1
Desulfovibrio desulfuricans G20	9	1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1	8	1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638
Desulfovibrio vulgaris Hildenborough	11	3
Desulfovibrio vulgaris str. Miyazaki F	10	2
Lawsonia intracellularis PHE/MN1-00

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
por	Desulfohalobium retbaense DSM 5692 Gene: Dret_1036: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	* Desulfomicrobium baculatum DSM 4028 Site: position = -189 score = 5.1131 sequence = TGTCTTTTTTTTCAGACA Site: position = -323 score = 4.21094 sequence = TGTCCGGAAAAATGGACG Site: position = -460 score = 5.15134 sequence = TGTCCGGAAAATCGGACG Gene: Dbac_1044: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	* Desulfovibrio desulfuricans G20 Site: position = -388 score = 5.43203 sequence = TGTCCTGTTTTTCAGACA Site: position = -363 score = 5.57214 sequence = AGTCCGCTTTTTCAGACA Site: position = -262 score = 5.33811 sequence = TGTCCTTTTTTTCAGACA Site: position = -243 score = 4.40343 sequence = TGTACGATCCTCCGGACA Gene: Dde_3237: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0298: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	* Desulfovibrio magneticus RS-1 Site: position = -442 score = 4.96822 sequence = AGTCCCCTTTTCCAGACT Site: position = -279 score = 4.7749 sequence = AGTCTGAAAAACCAGACT Site: position = -252 score = 4.89863 sequence = TGTCTGAAAAACCAGACT Site: position = -172 score = 4.38252 sequence = CATCCGATTTCCCGGATG Gene: DMR_20070: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02167: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Desulfovibrio salexigens DSM 2638	* Desulfovibrio vulgaris Hildenborough Site: position = -351 score = 5.20575 sequence = CGTCCACTTTTTCAGACA Site: position = -390 score = 5.20549 sequence = CATCCGCTTTTTCAGACA Site: position = -251 score = 5.06502 sequence = AGTCCGCTTTTCAAGACA Gene: DVU3025: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -631 score = 4.38582 sequence = TGTCCTACCTTTCGGACG Site: position = -592 score = 5.09806 sequence = CATCCGTTTTTTCGGACA Site: position = -467 score = 5.05253 sequence = CGTCCGGATTTTCGGACC Gene: DvMF_1860: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0278: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
lldP	* Desulfohalobium retbaense DSM 5692 Site: position = -174 score = 4.86701 sequence = TGTCCGCTATCCAGGACA Site: position = -362 score = 4.39504 sequence = AGGCCCAATTCCCAGACA Site: position = -532 score = 4.40291 sequence = TGTCTGAACTCCAGGACA Gene: Dret_1039: L-lactate permease	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1045: L-lactate permease	Desulfovibrio desulfuricans G20 Gene: Dde_3238: L-lactate permease	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2169: L-lactate permease	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_2573: L-lactate permease	2 Desulfovibrio vulgaris Hildenborough* Gene: DVU3026: L-lactate permease Site: position = -311 score = 4.91797 sequence = TGTCTGCAATGTCGGACA Site: position = -402 score = 5.01886 sequence = AGTCCATTTTTTCAGACT Gene: DVU2451: L-lactate permease	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1861: L-lactate permease	Lawsonia intracellularis PHE/MN1-00	L-lactate permease
glcD	Desulfohalobium retbaense DSM 5692 Gene: Dret_1038: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1046: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio desulfuricans G20 Gene: Dde_3239: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1994: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio magneticus RS-1 Gene: DMR_20060: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02393: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio salexigens DSM 2638 Gene: Desal_2572: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio vulgaris Hildenborough Gene: DVU3027: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1862: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Lawsonia intracellularis PHE/MN1-00	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcF	Desulfohalobium retbaense DSM 5692 Gene: Dret_1037: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1047: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Desulfovibrio desulfuricans G20 Gene: Dde_3240: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1993: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Desulfovibrio magneticus RS-1 Gene: DMR_20050: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02394: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Desulfovibrio salexigens DSM 2638 Gene: Desal_2571: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Desulfovibrio vulgaris Hildenborough Gene: DVU3028: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1863: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Lawsonia intracellularis PHE/MN1-00	Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
pta	Desulfohalobium retbaense DSM 5692 Gene: Dret_1035: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1048: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio desulfuricans G20 Gene: Dde_3241: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0297: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02164: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio salexigens DSM 2638 Gene: Desal_2570: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio vulgaris Hildenborough Gene: DVU3029: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1864: Phosphate acetyltransferase (EC 2.3.1.8)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0279: Phosphate acetyltransferase (EC 2.3.1.8)	Phosphate acetyltransferase (EC 2.3.1.8)
ackA	Desulfohalobium retbaense DSM 5692 Gene: Dret_1034: Acetate kinase (EC 2.7.2.1)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1049: Acetate kinase (EC 2.7.2.1)	Desulfovibrio desulfuricans G20 Gene: Dde_3242: Acetate kinase (EC 2.7.2.1)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0296: Acetate kinase (EC 2.7.2.1)	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02163: Acetate kinase (EC 2.7.2.1)	Desulfovibrio salexigens DSM 2638 Gene: Desal_2569: Acetate kinase (EC 2.7.2.1)	Desulfovibrio vulgaris Hildenborough Gene: DVU3030: Acetate kinase (EC 2.7.2.1)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1865: Acetate kinase (EC 2.7.2.1)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0280: Acetate kinase (EC 2.7.2.1)	Acetate kinase (EC 2.7.2.1)
DVU3031	Desulfohalobium retbaense DSM 5692 Gene: Dret_1033: BioD-like N-terminal domain of phosphotransacetylase	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_3243: BioD-like N-terminal domain of phosphotransacetylase	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_20030: BioD-like N-terminal domain of phosphotransacetylase	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3044: BioD-like N-terminal domain of phosphotransacetylase	Desulfovibrio vulgaris Hildenborough Gene: DVU3031: BioD-like N-terminal domain of phosphotransacetylase	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1866: BioD-like N-terminal domain of phosphotransacetylase	Lawsonia intracellularis PHE/MN1-00	BioD-like N-terminal domain of phosphotransacetylase
lldG	Desulfohalobium retbaense DSM 5692 Gene: Dret_1032: L-lactate dehydrogenase, hypothetical protein subunit LldG	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1728: L-lactate dehydrogenase, hypothetical protein subunit LldG	Desulfovibrio desulfuricans G20 Gene: Dde_3244: L-lactate dehydrogenase, hypothetical protein subunit LldG	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1992: L-lactate dehydrogenase, hypothetical protein subunit LldG	Desulfovibrio magneticus RS-1 Gene: DMR_20010: L-lactate dehydrogenase, hypothetical protein subunit LldG	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02395: L-lactate dehydrogenase, hypothetical protein subunit LldG	Desulfovibrio salexigens DSM 2638 Gene: Desal_2568: L-lactate dehydrogenase, hypothetical protein subunit LldG	Desulfovibrio vulgaris Hildenborough Gene: DVU3032: L-lactate dehydrogenase, hypothetical protein subunit LldG	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1867: L-lactate dehydrogenase, hypothetical protein subunit LldG	Lawsonia intracellularis PHE/MN1-00	L-lactate dehydrogenase, hypothetical protein subunit LldG
lldEF	Desulfohalobium retbaense DSM 5692 Gene: Dret_1031: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1729: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Desulfovibrio desulfuricans G20 Gene: Dde_3245: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1991: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Desulfovibrio magneticus RS-1 Gene: DMR_20000: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02396: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Desulfovibrio salexigens DSM 2638 Gene: Desal_2567: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Desulfovibrio vulgaris Hildenborough Gene: DVU3033: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1868: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Lawsonia intracellularis PHE/MN1-00	L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
DMR_20040	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_20040: CoA-binding domain protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3045: CoA-binding domain protein	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	CoA-binding domain protein
DMR_20020	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_20020: L-lactate permease	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	L-lactate permease

CRON 2.
lldP2	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	* Desulfovibrio vulgaris Hildenborough Site: position = -128 score = 4.15204 sequence = TGTCTGGAAAACCGTACG Site: position = -399 score = 4.92494 sequence = TGTCCATTTTCTCGGACT Gene: DVU3284: L-lactate permease	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -179 score = 3.83115 sequence = CGTCCCATATTGCGGAAT Site: position = -130 score = 3.71567 sequence = TGTCTGAAAAAAAAGATT Gene: DvMF_2129: L-lactate permease	Lawsonia intracellularis PHE/MN1-00	L-lactate permease

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DVU3023 - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --