Regulog DVU3023 - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | Lactate utilization |
| Effector: | Lactate |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
- By effector - Lactate
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | 9 | 1 |
| Desulfomicrobium baculatum DSM 4028 | 6 | 1 |
| Desulfovibrio desulfuricans G20 | 9 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio magneticus RS-1 | 8 | 1 |
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio vulgaris Hildenborough | 11 | 3 |
| Desulfovibrio vulgaris str. Miyazaki F | 10 | 2 |
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| por |
Gene: Dret_1036: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -189 score = 5.1131 sequence = TGTCTTTTTTTTCAGACA Site: position = -323 score = 4.21094 sequence = TGTCCGGAAAAATGGACG Site: position = -460 score = 5.15134 sequence = TGTCCGGAAAATCGGACG Gene: Dbac_1044: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
*
Desulfovibrio desulfuricans G20 Site: position = -388 score = 5.43203 sequence = TGTCCTGTTTTTCAGACA Site: position = -363 score = 5.57214 sequence = AGTCCGCTTTTTCAGACA Site: position = -262 score = 5.33811 sequence = TGTCCTTTTTTTCAGACA Site: position = -243 score = 4.40343 sequence = TGTACGATCCTCCGGACA Gene: Dde_3237: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Gene: Ddes_0298: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
*
Desulfovibrio magneticus RS-1 Site: position = -442 score = 4.96822 sequence = AGTCCCCTTTTCCAGACT Site: position = -279 score = 4.7749 sequence = AGTCTGAAAAACCAGACT Site: position = -252 score = 4.89863 sequence = TGTCTGAAAAACCAGACT Site: position = -172 score = 4.38252 sequence = CATCCGATTTCCCGGATG Gene: DMR_20070: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Gene: DESPIG_02167: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
|
*
Desulfovibrio vulgaris Hildenborough Site: position = -351 score = 5.20575 sequence = CGTCCACTTTTTCAGACA Site: position = -390 score = 5.20549 sequence = CATCCGCTTTTTCAGACA Site: position = -251 score = 5.06502 sequence = AGTCCGCTTTTCAAGACA Gene: DVU3025: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -631 score = 4.38582 sequence = TGTCCTACCTTTCGGACG Site: position = -592 score = 5.09806 sequence = CATCCGTTTTTTCGGACA Site: position = -467 score = 5.05253 sequence = CGTCCGGATTTTCGGACC Gene: DvMF_1860: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Gene: LI0278: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
| lldP |
*
Desulfohalobium retbaense DSM 5692 Site: position = -174 score = 4.86701 sequence = TGTCCGCTATCCAGGACA Site: position = -362 score = 4.39504 sequence = AGGCCCAATTCCCAGACA Site: position = -532 score = 4.40291 sequence = TGTCTGAACTCCAGGACA Gene: Dret_1039: L-lactate permease |
Gene: Dbac_1045: L-lactate permease |
Gene: Dde_3238: L-lactate permease |
Gene: Ddes_2169: L-lactate permease |
|
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Gene: Desal_2573: L-lactate permease |
*2
Desulfovibrio vulgaris Hildenborough Gene: DVU3026: L-lactate permease Site: position = -311 score = 4.91797 sequence = TGTCTGCAATGTCGGACA Site: position = -402 score = 5.01886 sequence = AGTCCATTTTTTCAGACT Gene: DVU2451: L-lactate permease |
Gene: DvMF_1861: L-lactate permease |
|
L-lactate permease |
| glcD |
Gene: Dret_1038: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Dbac_1046: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Dde_3239: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Ddes_1994: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: DMR_20060: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: DESPIG_02393: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Desal_2572: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: DVU3027: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: DvMF_1862: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
|
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
| glcF |
Gene: Dret_1037: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Dbac_1047: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Dde_3240: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Ddes_1993: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: DMR_20050: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: DESPIG_02394: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Desal_2571: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: DVU3028: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: DvMF_1863: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
|
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
| pta |
Gene: Dret_1035: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: Dbac_1048: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: Dde_3241: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: Ddes_0297: Phosphate acetyltransferase (EC 2.3.1.8) |
|
Gene: DESPIG_02164: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: Desal_2570: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: DVU3029: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: DvMF_1864: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: LI0279: Phosphate acetyltransferase (EC 2.3.1.8) |
Phosphate acetyltransferase (EC 2.3.1.8) |
| ackA |
Gene: Dret_1034: Acetate kinase (EC 2.7.2.1) |
Gene: Dbac_1049: Acetate kinase (EC 2.7.2.1) |
Gene: Dde_3242: Acetate kinase (EC 2.7.2.1) |
Gene: Ddes_0296: Acetate kinase (EC 2.7.2.1) |
|
Gene: DESPIG_02163: Acetate kinase (EC 2.7.2.1) |
Gene: Desal_2569: Acetate kinase (EC 2.7.2.1) |
Gene: DVU3030: Acetate kinase (EC 2.7.2.1) |
Gene: DvMF_1865: Acetate kinase (EC 2.7.2.1) |
Gene: LI0280: Acetate kinase (EC 2.7.2.1) |
Acetate kinase (EC 2.7.2.1) |
| DVU3031 |
Gene: Dret_1033: BioD-like N-terminal domain of phosphotransacetylase |
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Gene: Dde_3243: BioD-like N-terminal domain of phosphotransacetylase |
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Gene: DMR_20030: BioD-like N-terminal domain of phosphotransacetylase |
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Gene: Desal_3044: BioD-like N-terminal domain of phosphotransacetylase |
Gene: DVU3031: BioD-like N-terminal domain of phosphotransacetylase |
Gene: DvMF_1866: BioD-like N-terminal domain of phosphotransacetylase |
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BioD-like N-terminal domain of phosphotransacetylase |
| lldG |
Gene: Dret_1032: L-lactate dehydrogenase, hypothetical protein subunit LldG |
Gene: Dbac_1728: L-lactate dehydrogenase, hypothetical protein subunit LldG |
Gene: Dde_3244: L-lactate dehydrogenase, hypothetical protein subunit LldG |
Gene: Ddes_1992: L-lactate dehydrogenase, hypothetical protein subunit LldG |
Gene: DMR_20010: L-lactate dehydrogenase, hypothetical protein subunit LldG |
Gene: DESPIG_02395: L-lactate dehydrogenase, hypothetical protein subunit LldG |
Gene: Desal_2568: L-lactate dehydrogenase, hypothetical protein subunit LldG |
Gene: DVU3032: L-lactate dehydrogenase, hypothetical protein subunit LldG |
Gene: DvMF_1867: L-lactate dehydrogenase, hypothetical protein subunit LldG |
|
L-lactate dehydrogenase, hypothetical protein subunit LldG |
| lldEF |
Gene: Dret_1031: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: Dbac_1729: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: Dde_3245: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: Ddes_1991: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: DMR_20000: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: DESPIG_02396: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: Desal_2567: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: DVU3033: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: DvMF_1868: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
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L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
| DMR_20040 |
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Gene: DMR_20040: CoA-binding domain protein |
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Gene: Desal_3045: CoA-binding domain protein |
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CoA-binding domain protein |
| DMR_20020 |
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Gene: DMR_20020: L-lactate permease |
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L-lactate permease |
| CRON 2. | |||||||||||
| lldP2 |
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*
Desulfovibrio vulgaris Hildenborough Site: position = -128 score = 4.15204 sequence = TGTCTGGAAAACCGTACG Site: position = -399 score = 4.92494 sequence = TGTCCATTTTCTCGGACT Gene: DVU3284: L-lactate permease |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -179 score = 3.83115 sequence = CGTCCCATATTGCGGAAT Site: position = -130 score = 3.71567 sequence = TGTCTGAAAAAAAAGATT Gene: DvMF_2129: L-lactate permease |
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L-lactate permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |