Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA-1 in Desulfovibrio salexigens DSM 2638

Properties
Regulator type: Transcription factor
TF locus tag: Desal_1531
Regulator family: Fis
Regulation mode:
Biological process: Nitrogen assimilation
Effector:
Regulog: NifA-1 - Desulfovibrionales
Statistics of regulated genes:
- Genes 22
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 101 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -289
Score: 4.4
Sequence: CTGAAAAAATTGTCAA
Position: -185
Score: 4.7
Sequence: TTTACCTTTTTGTAAT
Position: -134
Score: 4.4
Sequence: AATACATTTTTGTAAT
Locus tag: Desal_3066
Name: amtB2
Funciton: Ammonium transporter
Locus tag: Desal_3067
Name: glnB2
Funciton: Nitrogen regulatory protein P-II
Desal_3066
amtB2
Ammonium transporter
Desal_3067
glnB2
Nitrogen regulatory protein P-II
Position: -153
Score: 3.6
Sequence: TTAACAAAAATGATTT
Position: -9
Score: 3.6
Sequence: TGTACAAAAGTGATAA
Locus tag: Desal_3370
Name: null
Funciton: amino acid ABC transporter, ATP-binding protein
Locus tag: Desal_3369
Name: null
Funciton: amino acid ABC transporter, amino acid-binding protein
Locus tag: Desal_3368
Name: null
Funciton: Glutamine-binding periplasmic protein/glutamine transport system permease protein
Desal_3370
amino acid ABC transporter, ATP-binding protein
Desal_3369
amino acid ABC transporter, amino acid-binding protein
Desal_3368
Glutamine-binding periplasmic protein/glutamine transport system permease protein
Position: -276
Score: 4.7
Sequence: TATACAATTTTGTAAC
Position: -225
Score: 4.8
Sequence: ATTACATTTTTGTAAC
Position: -182
Score: 4.6
Sequence: TCTACATTTTTGTAAG
Locus tag: Desal_2290
Name: glnN
Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Desal_2290
glnN
Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Position: -358
Score: 3.9
Sequence: TTGTCTTTTTTGTATA
Position: -197
Score: 4.5
Sequence: TGTACATAAATGGAAA
Locus tag: Desal_1519
Name: glnQ
Funciton: ABC-type polar amino acid transport system, ATPase component
Locus tag: Desal_1520
Name: null
Funciton: amino acid ABC transporter, periplasmic amino acid-binding protein
Locus tag: Desal_1521
Name: gltJ
Funciton: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
Locus tag: Desal_1522
Name: null
Funciton: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
Desal_1519
glnQ
ABC-type polar amino acid transport system, ATPase component
Desal_1520
amino acid ABC transporter, periplasmic amino acid-binding protein
Desal_1521
gltJ
amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
Desal_1522
amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
Position: -194
Score: 3.8
Sequence: TTACAAATATTGTTAA
Position: -92
Score: 4.8
Sequence: TTTACAATATTGATAA
Position: -35
Score: 4.3
Sequence: CTAACAGTATTGAAAA
Locus tag: Desal_3587
Name: DVU0671
Funciton: Ferredoxin-dependent glutamate synthase
Desal_3587
DVU0671
Ferredoxin-dependent glutamate synthase
Position: -339
Score: 3.9
Sequence: TTGCCAAAATTGTTTT
Locus tag: Desal_3280
Name: null
Funciton: putative glutamate synthase, large subunit (domain 1)
Locus tag: Desal_3279
Name: null
Funciton: glutamate synthase, iron-sulfur cluster-binding subunit, putative
Locus tag: Desal_3278
Name: null
Funciton: glutamate synthase alpha subunit domain protein
Desal_3280
putative glutamate synthase, large subunit (domain 1)
Desal_3279
glutamate synthase, iron-sulfur cluster-binding subunit, putative
Desal_3278
glutamate synthase alpha subunit domain protein
Position: -138
Score: 4.2
Sequence: TTTCCATTAATGTTCA
Position: -108
Score: 4.8
Sequence: TTTACATAAATGTGAA
Locus tag: Desal_0518
Name: nifA-2
Funciton: transcriptional regulator, NifA, Fis Family
Desal_0518
nifA-2
transcriptional regulator, NifA, Fis Family
Position: -140
Score: 4.4
Sequence: CTGTCAATTTTGAAAA
Locus tag: Desal_1531
Name: nifA-1
Funciton: transcriptional regulator, NifA subfamily, Fis Family
Desal_1531
nifA-1
transcriptional regulator, NifA subfamily, Fis Family
Position: -231
Score: 3.9
Sequence: ATTGCAAAAAAGTCAA
Position: -76
Score: 4.5
Sequence: TTGACCTTTTTGTCAG
Locus tag: Desal_1534
Name: null
Funciton: hypothetical protein
Locus tag: Desal_1533
Name: iorA
Funciton: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
Locus tag: Desal_1532
Name: iorB
Funciton: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
Desal_1534
hypothetical protein
Desal_1533
iorA
indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
Desal_1532
iorB
indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
Position: -204
Score: 4
Sequence: TTTCCAATTATGTTTT
Position: -153
Score: 4
Sequence: TTTTCAGTTTTGGCAC
Position: -91
Score: 3.7
Sequence: TGTCTAAAATTGTAAA
Position: -50
Score: 4
Sequence: GAGACGAAATTGTAAA
Locus tag: Desal_3438
Name: amtB
Funciton: Ammonium transporter
Locus tag: Desal_3437
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: Desal_3436
Name: glnD
Funciton: UTP-GlnB uridylyltransferase, GlnD
Desal_3438
amtB
Ammonium transporter
Desal_3437
glnB
Nitrogen regulatory protein P-II
Desal_3436
glnD
UTP-GlnB uridylyltransferase, GlnD
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