Regulog NifA-1 - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:
Biological process:	Nitrogen assimilation
Effector:
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 101 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Fis
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Desulfohalobium retbaense DSM 5692	7	4
Desulfomicrobium baculatum DSM 4028	12	6
Desulfovibrio desulfuricans G20	20	9
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1	4	2
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638	22	10
Desulfovibrio vulgaris Hildenborough	23	9
Desulfovibrio vulgaris str. Miyazaki F	25	11
Lawsonia intracellularis PHE/MN1-00

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
gltB-1	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	* Desulfovibrio desulfuricans G20 Site: position = -46 score = 4.17211 sequence = TAAACATTTTTGTCAC Site: position = -254 score = 4.90793 sequence = ATTACAAAATTGTAAT Site: position = -208 score = 3.6593 sequence = TTCTCAAAAATATAAA Gene: Dde_1814: Glutamate synthase, large subunit (gltB-1)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_1630: Glutamate synthase, large subunit (gltB-1)	* Desulfovibrio vulgaris Hildenborough Site: position = -240 score = 4.07389 sequence = GTCTCAAAATTGTAAA Gene: DVU1823: Glutamate synthase, large subunit (gltB-1)	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -403 score = 3.51381 sequence = AGAACAAAAATGTTAT Gene: DvMF_0546: Glutamate synthase, large subunit (gltB-1)	Lawsonia intracellularis PHE/MN1-00	Glutamate synthase, large subunit (gltB-1)
DVU1822	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_1815: glutamate synthase, amidotransferase subunit, putative	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_1633: glutamate synthase, amidotransferase subunit, putative	Desulfovibrio vulgaris Hildenborough Gene: DVU1822: glutamate synthase, amidotransferase subunit, putative	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0545: glutamate synthase, amidotransferase subunit, putative	Lawsonia intracellularis PHE/MN1-00	glutamate synthase, amidotransferase subunit, putative
gltB	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_1816: Glutamate synthase, large subunit (gltB)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_1634: Glutamate synthase, large subunit (gltB)	Desulfovibrio vulgaris Hildenborough Gene: DVU1821: Glutamate synthase, large subunit (gltB)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0544: Glutamate synthase, large subunit (gltB)	Lawsonia intracellularis PHE/MN1-00	Glutamate synthase, large subunit (gltB)

CRON 2.
DVU3290	Desulfohalobium retbaense DSM 5692 Gene: Dret_1375: putative glutamate synthase, large subunit (domain 1)	* Desulfomicrobium baculatum DSM 4028 Site: position = -75 score = 4.34454 sequence = ATGACATTTCTGTCAT Site: position = -117 score = 4.41534 sequence = TCTACATTTTTGTCAT Gene: Dbac_1372: putative glutamate synthase, large subunit (domain 1)	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1155: putative glutamate synthase, large subunit (domain 1)	Desulfovibrio magneticus RS-1 Gene: DMR_46020: putative glutamate synthase, large subunit (domain 1)	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -339 score = 3.88325 sequence = TTGCCAAAATTGTTTT Gene: Desal_3280: putative glutamate synthase, large subunit (domain 1)	* Desulfovibrio vulgaris Hildenborough Site: position = -230 score = 4.17211 sequence = TAGACAAAAATGTTAC Site: position = -178 score = 3.95201 sequence = TTGCCATTTTTGATAT Gene: DVU3290: putative glutamate synthase, large subunit (domain 1)	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -101 score = 3.80721 sequence = TTGCCGTTTTTGGAAT Site: position = -176 score = 4.14318 sequence = GTGGCAAAAATGTAAT Site: position = -153 score = 4.17654 sequence = AGTACAAATATGTAAT Gene: DvMF_2387: putative glutamate synthase, large subunit (domain 1)	Lawsonia intracellularis PHE/MN1-00	putative glutamate synthase, large subunit (domain 1)
DVU3291	Desulfohalobium retbaense DSM 5692 Gene: Dret_1376: glutamate synthase, iron-sulfur cluster-binding subunit, putative	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1371: glutamate synthase, iron-sulfur cluster-binding subunit, putative	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1156: glutamate synthase, iron-sulfur cluster-binding subunit, putative	Desulfovibrio magneticus RS-1 Gene: DMR_46030: glutamate synthase, iron-sulfur cluster-binding subunit, putative	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3279: glutamate synthase, iron-sulfur cluster-binding subunit, putative	Desulfovibrio vulgaris Hildenborough Gene: DVU3291: glutamate synthase, iron-sulfur cluster-binding subunit, putative	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2388: glutamate synthase, iron-sulfur cluster-binding subunit, putative	Lawsonia intracellularis PHE/MN1-00	glutamate synthase, iron-sulfur cluster-binding subunit, putative
DVU3292	Desulfohalobium retbaense DSM 5692 Gene: Dret_1377: glutamate synthase alpha subunit domain protein	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1370: glutamate synthase alpha subunit domain protein	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1157: glutamate synthase alpha subunit domain protein	Desulfovibrio magneticus RS-1 Gene: DMR_46040: glutamate synthase alpha subunit domain protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3278: glutamate synthase alpha subunit domain protein	Desulfovibrio vulgaris Hildenborough Gene: DVU3292: glutamate synthase alpha subunit domain protein	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	glutamate synthase alpha subunit domain protein

CRON 3.
amtB	* Desulfohalobium retbaense DSM 5692 Site: position = -132 score = 4.18537 sequence = ATGCCATTTTTGACAA Site: position = -173 score = 3.92457 sequence = GTAACAAATTTGTCCA Gene: Dret_2267: Ammonium transporter	* Desulfomicrobium baculatum DSM 4028 Site: position = -387 score = 4.54763 sequence = TTTTCAATTTTGGAAG Gene: Dbac_3048: Ammonium transporter	* Desulfovibrio desulfuricans G20 Site: position = -207 score = 3.69323 sequence = TTAACAAAATTGTGTT Site: position = -175 score = 4.29967 sequence = ATAACAAATATGTATA Gene: Dde_2311: Ammonium transporter	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1147: Ammonium transporter	* Desulfovibrio magneticus RS-1 Site: position = -158 score = 4.445 sequence = GTTGCAAAAATGTCAA Gene: DMR_34890: Ammonium transporter	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00642: Ammonium transporter	* Desulfovibrio salexigens DSM 2638 Site: position = -50 score = 4.01608 sequence = GAGACGAAATTGTAAA Site: position = -91 score = 3.7259 sequence = TGTCTAAAATTGTAAA Site: position = -204 score = 4.00616 sequence = TTTCCAATTATGTTTT Site: position = -153 score = 3.97661 sequence = TTTTCAGTTTTGGCAC Gene: Desal_3438: Ammonium transporter	* Desulfovibrio vulgaris Hildenborough Site: position = -159 score = 3.85821 sequence = ACGACAAAAATGCAAA Gene: DVU1231: Ammonium transporter	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -175 score = 3.90348 sequence = TTACCAAAATGGAAAA Site: position = -208 score = 4.10153 sequence = TTTACAAAAAAGAAAC Site: position = -176 score = 4.2782 sequence = GTTACCAAAATGGAAA Gene: DvMF_0866: Ammonium transporter	Lawsonia intracellularis PHE/MN1-00	Ammonium transporter
glnB	Desulfohalobium retbaense DSM 5692 Gene: Dret_2268: Nitrogen regulatory protein P-II	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_3047: Nitrogen regulatory protein P-II	Desulfovibrio desulfuricans G20 Gene: Dde_2310: Nitrogen regulatory protein P-II	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1148: Nitrogen regulatory protein P-II	Desulfovibrio magneticus RS-1 Gene: DMR_34880: Nitrogen regulatory protein P-II	2 Desulfovibrio piger ATCC 29098 Gene: DESPIG_00640: Nitrogen regulatory protein P-II Gene: DESPIG_00641: Nitrogen regulatory protein P-II	Desulfovibrio salexigens DSM 2638 Gene: Desal_3437: Nitrogen regulatory protein P-II	Desulfovibrio vulgaris Hildenborough Gene: DVU1232: Nitrogen regulatory protein P-II	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0865: Nitrogen regulatory protein P-II	Lawsonia intracellularis PHE/MN1-00	Nitrogen regulatory protein P-II
glnD	Desulfohalobium retbaense DSM 5692 Gene: Dret_2269: UTP-GlnB uridylyltransferase, GlnD	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_3046: UTP-GlnB uridylyltransferase, GlnD	Desulfovibrio desulfuricans G20 Gene: Dde_2309: UTP-GlnB uridylyltransferase, GlnD	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_34870: UTP-GlnB uridylyltransferase, GlnD	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3436: UTP-GlnB uridylyltransferase, GlnD	Desulfovibrio vulgaris Hildenborough Gene: DVU1233: UTP-GlnB uridylyltransferase, GlnD	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0864: UTP-GlnB uridylyltransferase, GlnD	Lawsonia intracellularis PHE/MN1-00	UTP-GlnB uridylyltransferase, GlnD

CRON 4.
DVU0751	Desulfohalobium retbaense DSM 5692 Gene: Dret_2028: amino acid ABC transporter, ATP-binding protein	Desulfomicrobium baculatum DSM 4028	* Desulfovibrio desulfuricans G20 Site: position = -139 score = 4.4716 sequence = ATAACAAATTTGTAAT Gene: Dde_2763: amino acid ABC transporter, ATP-binding protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -153 score = 3.61848 sequence = TTAACAAAAATGATTT Site: position = -9 score = 3.58247 sequence = TGTACAAAAGTGATAA Gene: Desal_3370: amino acid ABC transporter, ATP-binding protein	* Desulfovibrio vulgaris Hildenborough Site: position = -246 score = 4.14937 sequence = TTGACGTTTTTGAAAT Site: position = -106 score = 4.78944 sequence = ATGACAGTTTTGTAAA Gene: DVU0753: amino acid ABC transporter, ATP-binding protein	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -177 score = 4.23199 sequence = GAAACATTAATGTCAA Site: position = -305 score = 4.07333 sequence = CTGACAATTTCGCAAA Gene: DvMF_2788: amino acid ABC transporter, ATP-binding protein	Lawsonia intracellularis PHE/MN1-00	amino acid ABC transporter, ATP-binding protein
DVU0752	Desulfohalobium retbaense DSM 5692 Gene: Dret_2029: amino acid ABC transporter, amino acid-binding protein	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_2764: amino acid ABC transporter, amino acid-binding protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3369: amino acid ABC transporter, amino acid-binding protein	Desulfovibrio vulgaris Hildenborough Gene: DVU0752: amino acid ABC transporter, amino acid-binding protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2787: amino acid ABC transporter, amino acid-binding protein	Lawsonia intracellularis PHE/MN1-00	amino acid ABC transporter, amino acid-binding protein
DVU0753	Desulfohalobium retbaense DSM 5692 Gene: Dret_2030: Glutamine-binding periplasmic protein/glutamine transport system permease protein	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_2765: Glutamine-binding periplasmic protein/glutamine transport system permease protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3368: Glutamine-binding periplasmic protein/glutamine transport system permease protein	Desulfovibrio vulgaris Hildenborough Gene: DVU0751: Glutamine-binding periplasmic protein/glutamine transport system permease protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2786: Glutamine-binding periplasmic protein/glutamine transport system permease protein	Lawsonia intracellularis PHE/MN1-00	Glutamine-binding periplasmic protein/glutamine transport system permease protein
glnN	Desulfohalobium retbaense DSM 5692	* Desulfomicrobium baculatum DSM 4028 Site: position = -208 score = 4.58264 sequence = TTTGCAAATTTGTAAT Site: position = -328 score = 4.02056 sequence = TTGACATTTATGTGCA Site: position = -155 score = 4.51302 sequence = ATTTCAAAAATGTAAT Gene: Dbac_1496: Glutamine synthetase type III, GlnN (EC 6.3.1.2)	* Desulfovibrio desulfuricans G20 Site: position = -174 score = 4.66137 sequence = TAAACATTTATGTAAA Site: position = -216 score = 4.11999 sequence = TTAACAAAAAAGTTAA Gene: Dde_0102: Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1593: Glutamine synthetase type III, GlnN (EC 6.3.1.2)	* Desulfovibrio magneticus RS-1 Site: position = -236 score = 4.43233 sequence = TTTACATTATTGCTAG Site: position = -335 score = 3.6556 sequence = TTGACACAATTGTTTC Gene: DMR_10730: Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00805: Glutamine synthetase type III, GlnN (EC 6.3.1.2)	* Desulfovibrio salexigens DSM 2638 Site: position = -276 score = 4.68155 sequence = TATACAATTTTGTAAC Site: position = -225 score = 4.8333 sequence = ATTACATTTTTGTAAC Site: position = -182 score = 4.63451 sequence = TCTACATTTTTGTAAG Gene: Desal_2290: Glutamine synthetase type III, GlnN (EC 6.3.1.2)	* Desulfovibrio vulgaris Hildenborough Site: position = -275 score = 4.67432 sequence = TATACATTTTTGGAAA Site: position = -178 score = 4.26234 sequence = TTTACTATTTTGAAAG Site: position = -230 score = 4.62012 sequence = ATTACAATAGTGTCAA Site: position = -411 score = 4.31398 sequence = TTTACATATTTGATAC Gene: DVU1258: Glutamine synthetase type III, GlnN (EC 6.3.1.2)	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -332 score = 3.91292 sequence = GTTACAAGTTTGCAAA Site: position = -54 score = 4.02959 sequence = GAAACAAATTTGTAAG Site: position = -288 score = 3.89144 sequence = TGAACGAATTTGTAAA Gene: DvMF_1590: Glutamine synthetase type III, GlnN (EC 6.3.1.2)	Lawsonia intracellularis PHE/MN1-00	Glutamine synthetase type III, GlnN (EC 6.3.1.2)

CRON 5.
glnQ	Desulfohalobium retbaense DSM 5692 Gene: Dret_2152: ABC-type polar amino acid transport system, ATPase component	Desulfomicrobium baculatum DSM 4028	* Desulfovibrio desulfuricans G20 Site: position = -253 score = 5.13511 sequence = TTTACAATTATGTAAC Site: position = -59 score = 3.65593 sequence = TTGACAATTTTGAGCA Site: position = 23 score = 3.54672 sequence = TATTCATAAATGGTAC Gene: Dde_1428: ABC-type polar amino acid transport system, ATPase component	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_44830: ABC-type polar amino acid transport system, ATPase component	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -358 score = 3.87123 sequence = TTGTCTTTTTTGTATA Site: position = -197 score = 4.47657 sequence = TGTACATAAATGGAAA Gene: Desal_1519: ABC-type polar amino acid transport system, ATPase component	* Desulfovibrio vulgaris Hildenborough Site: position = -248 score = 4.05154 sequence = ATTACTTTTTTGTCAC Site: position = -403 score = 3.65973 sequence = TTGTCTTGTTTGTAAA Gene: DVU2343: ABC-type polar amino acid transport system, ATPase component	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -67 score = 4.73947 sequence = CTGACAATATGGTAAA Site: position = -340 score = 4.60264 sequence = TTTACGTTTTTGTTAA Gene: DvMF_3151: ABC-type polar amino acid transport system, ATPase component	Lawsonia intracellularis PHE/MN1-00 Gene: LI1129: ABC-type polar amino acid transport system, ATPase component	ABC-type polar amino acid transport system, ATPase component
DVU2342	Desulfohalobium retbaense DSM 5692 Gene: Dret_2153: amino acid ABC transporter, periplasmic amino acid-binding protein	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_1429: amino acid ABC transporter, periplasmic amino acid-binding protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_44820: amino acid ABC transporter, periplasmic amino acid-binding protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_1520: amino acid ABC transporter, periplasmic amino acid-binding protein	Desulfovibrio vulgaris Hildenborough Gene: DVU2342: amino acid ABC transporter, periplasmic amino acid-binding protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_3152: amino acid ABC transporter, periplasmic amino acid-binding protein	Lawsonia intracellularis PHE/MN1-00	amino acid ABC transporter, periplasmic amino acid-binding protein
gltJ	Desulfohalobium retbaense DSM 5692 Gene: Dret_2154: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_1430: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_44810: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_1521: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family	Desulfovibrio vulgaris Hildenborough Gene: DVU2341: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_3153: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family	Lawsonia intracellularis PHE/MN1-00	amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
DVU2340	Desulfohalobium retbaense DSM 5692 Gene: Dret_2155: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_1431: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_44800: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_1522: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family	Desulfovibrio vulgaris Hildenborough Gene: DVU2340: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_3154: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family	Lawsonia intracellularis PHE/MN1-00	amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family

CRON 6.
DVU0671	* Desulfohalobium retbaense DSM 5692 Site: position = -87 score = 4.60264 sequence = TTTACATTTTCGTAAC Gene: Dret_0402: Ferredoxin-dependent glutamate synthase	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2293: Ferredoxin-dependent glutamate synthase	* Desulfovibrio desulfuricans G20 Site: position = -198 score = 3.73868 sequence = ATTGCATTTTTCTCAA Site: position = -353 score = 4.69291 sequence = TTGACGTTTATGTCAA Gene: Dde_1218: Ferredoxin-dependent glutamate synthase	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_17750: Ferredoxin-dependent glutamate synthase	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -194 score = 3.8194 sequence = TTACAAATATTGTTAA Site: position = -92 score = 4.83037 sequence = TTTACAATATTGATAA Site: position = -35 score = 4.32743 sequence = CTAACAGTATTGAAAA Gene: Desal_3587: Ferredoxin-dependent glutamate synthase	* Desulfovibrio vulgaris Hildenborough Site: position = -355 score = 4.8333 sequence = GTTACATTTTTGTAAT Gene: DVU0671: Ferredoxin-dependent glutamate synthase	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -369 score = 3.73545 sequence = TTCGCGAAATTGTAAA Gene: DvMF_2665: Ferredoxin-dependent glutamate synthase	Lawsonia intracellularis PHE/MN1-00	Ferredoxin-dependent glutamate synthase

CRON 7.
DVU1952	Desulfohalobium retbaense DSM 5692 Gene: Dret_0834: hypothetical protein	* Desulfomicrobium baculatum DSM 4028 Site: position = -38 score = 5.07496 sequence = TTTACAATAATGGCAA Gene: Dbac_1504: hypothetical protein	* Desulfovibrio desulfuricans G20 Site: position = -99 score = 4.86554 sequence = TTGACATTTCTGTAAG Gene: Dde_1634: hypothetical protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0442: hypothetical protein	Desulfovibrio magneticus RS-1 Gene: DMR_26660: hypothetical protein	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02606: hypothetical protein	* Desulfovibrio salexigens DSM 2638 Site: position = -231 score = 3.86076 sequence = ATTGCAAAAAAGTCAA Site: position = -76 score = 4.52642 sequence = TTGACCTTTTTGTCAG Gene: Desal_1534: hypothetical protein	* Desulfovibrio vulgaris Hildenborough Site: position = -92 score = 4.86554 sequence = TTGACATTTCTGTAAG Gene: DVU1952: hypothetical protein	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -92 score = 4.77935 sequence = TTGACATTTCTGTAAT Gene: DvMF_0611: hypothetical protein	Lawsonia intracellularis PHE/MN1-00	hypothetical protein
iorA	Desulfohalobium retbaense DSM 5692 Gene: Dret_0833: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0443: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative	Desulfovibrio magneticus RS-1 Gene: DMR_26670: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02607: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative	Desulfovibrio salexigens DSM 2638 Gene: Desal_1533: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative	Desulfovibrio vulgaris Hildenborough Gene: DVU1951: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0610: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative	Lawsonia intracellularis PHE/MN1-00	indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
iorB	Desulfohalobium retbaense DSM 5692 Gene: Dret_0832: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0444: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative	Desulfovibrio magneticus RS-1 Gene: DMR_26680: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02608: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative	Desulfovibrio salexigens DSM 2638 Gene: Desal_1532: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative	Desulfovibrio vulgaris Hildenborough Gene: DVU1950: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0609: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative	Lawsonia intracellularis PHE/MN1-00	indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
nifA-1	Desulfohalobium retbaense DSM 5692 Gene: Dret_0831: transcriptional regulator, NifA subfamily, Fis Family	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1505: transcriptional regulator, NifA subfamily, Fis Family	Desulfovibrio desulfuricans G20 Gene: Dde_1635: transcriptional regulator, NifA subfamily, Fis Family	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_26690: transcriptional regulator, NifA subfamily, Fis Family	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -140 score = 4.39331 sequence = CTGTCAATTTTGAAAA Gene: Desal_1531: transcriptional regulator, NifA subfamily, Fis Family	Desulfovibrio vulgaris Hildenborough Gene: DVU1949: transcriptional regulator, NifA subfamily, Fis Family	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0608: transcriptional regulator, NifA subfamily, Fis Family	Lawsonia intracellularis PHE/MN1-00	transcriptional regulator, NifA subfamily, Fis Family

CRON 8.
amtB2	* Desulfohalobium retbaense DSM 5692 Site: position = -151 score = 4.99375 sequence = TTTTCAATTTTGTCAA Site: position = -270 score = 4.46981 sequence = ATTCCATTTTTGTAAC Site: position = -393 score = 3.88388 sequence = GTTTCAGAAATGGAAG Gene: Dret_0113: Ammonium transporter	* Desulfomicrobium baculatum DSM 4028 Site: position = -176 score = 4.66137 sequence = TATACATAAATGTTAA Site: position = -284 score = 4.54763 sequence = CTTCCAAAATTGAAAA Site: position = -64 score = 3.71212 sequence = TTAACAACTTTGGCAC Gene: Dbac_3049: Ammonium transporter	* Desulfovibrio desulfuricans G20 Site: position = -192 score = 4.8527 sequence = TTTACTTTTTTGTAAA Site: position = -160 score = 5.15542 sequence = TTGACATATATGTCAA Gene: Dde_3492: Ammonium transporter	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -134 score = 4.43418 sequence = AATACATTTTTGTAAT Site: position = -289 score = 4.364 sequence = CTGAAAAAATTGTCAA Site: position = -185 score = 4.70622 sequence = TTTACCTTTTTGTAAT Gene: Desal_3066: Ammonium transporter	Desulfovibrio vulgaris Hildenborough	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -238 score = 4.36964 sequence = TATACAAAAATGTTAT Site: position = -419 score = 4.81484 sequence = TTTTCAAAAATGTAAT Site: position = -270 score = 4.10889 sequence = AATGCAAATATGTAAA Gene: DvMF_3023: Ammonium transporter	Lawsonia intracellularis PHE/MN1-00	Ammonium transporter
glnB2	Desulfohalobium retbaense DSM 5692 Gene: Dret_0112: Nitrogen regulatory protein P-II	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_3050: Nitrogen regulatory protein P-II	Desulfovibrio desulfuricans G20 Gene: Dde_3493: Nitrogen regulatory protein P-II	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3067: Nitrogen regulatory protein P-II	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_3024: Nitrogen regulatory protein P-II	Lawsonia intracellularis PHE/MN1-00	Nitrogen regulatory protein P-II

CRON 9.
glnA	* Desulfohalobium retbaense DSM 5692 Site: position = -141 score = 4.98366 sequence = TTGACAAAAATGAAAA Site: position = -182 score = 4.45119 sequence = TTTTCGTTTTTGTCAA Site: position = -173 score = 3.87023 sequence = TTGTCAATATTGGATC Gene: Dret_2389: Glutamine synthetase type I (EC 6.3.1.2)	* Desulfomicrobium baculatum DSM 4028 Site: position = -89 score = 4.59095 sequence = TTTCCAATTTTGCAAA Gene: Dbac_2819: Glutamine synthetase type I (EC 6.3.1.2)	* Desulfovibrio desulfuricans G20 Site: position = -140 score = 3.95602 sequence = TTTGCAAAAATGTGAT Gene: Dde_0104: Glutamine synthetase type I (EC 6.3.1.2)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_06110: Glutamine synthetase type I (EC 6.3.1.2)	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3792: Glutamine synthetase type I (EC 6.3.1.2)	* Desulfovibrio vulgaris Hildenborough Site: position = -176 score = 3.86061 sequence = TGAACAACATTGTCAA Site: position = -135 score = 4.77669 sequence = CTTCCAATAATGTAAG Gene: DVU3392: Glutamine synthetase type I (EC 6.3.1.2)	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -203 score = 4.86819 sequence = TTTACAATGATGTCAA Gene: DvMF_2099: Glutamine synthetase type I (EC 6.3.1.2)	Lawsonia intracellularis PHE/MN1-00	Glutamine synthetase type I (EC 6.3.1.2)

CRON 10.
nifA-2	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	* Desulfovibrio salexigens DSM 2638 Site: position = -138 score = 4.18019 sequence = TTTCCATTAATGTTCA Site: position = -108 score = 4.80487 sequence = TTTACATAAATGTGAA Gene: Desal_0518: transcriptional regulator, NifA, Fis Family	Desulfovibrio vulgaris Hildenborough	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -170 score = 3.62134 sequence = TATTCAAAAATGGTAT Site: position = -138 score = 4.36713 sequence = TTTCGATAATTGTAAA Gene: DvMF_2528: transcriptional regulator, NifA, Fis Family	Lawsonia intracellularis PHE/MN1-00	transcriptional regulator, NifA, Fis Family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NifA-1 - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --