Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA-1 in Desulfovibrio vulgaris Hildenborough

Properties
Regulator type: Transcription factor
TF locus tag: DVU1949
Regulator family: Fis
Regulation mode:
Biological process: Nitrogen assimilation
Effector:
Regulog: NifA-1 - Desulfovibrionales
Statistics of regulated genes:
- Genes 23
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 101 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -411
Score: 4.3
Sequence: TTTACATATTTGATAC
Position: -275
Score: 4.7
Sequence: TATACATTTTTGGAAA
Position: -230
Score: 4.6
Sequence: ATTACAATAGTGTCAA
Position: -178
Score: 4.3
Sequence: TTTACTATTTTGAAAG
Locus tag: DVU1258
Name: glnN
Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
DVU1258
glnN
Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Position: -159
Score: 3.9
Sequence: ACGACAAAAATGCAAA
Locus tag: DVU1231
Name: amtB
Funciton: Ammonium transporter
Locus tag: DVU1232
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: DVU1233
Name: glnD
Funciton: UTP-GlnB uridylyltransferase, GlnD
DVU1231
amtB
Ammonium transporter
DVU1232
glnB
Nitrogen regulatory protein P-II
DVU1233
glnD
UTP-GlnB uridylyltransferase, GlnD
Position: -176
Score: 3.9
Sequence: TGAACAACATTGTCAA
Position: -135
Score: 4.8
Sequence: CTTCCAATAATGTAAG
Locus tag: DVU3392
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
DVU3392
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -92
Score: 4.9
Sequence: TTGACATTTCTGTAAG
Locus tag: DVU1952
Name: null
Funciton: hypothetical protein
Locus tag: DVU1951
Name: iorA
Funciton: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
Locus tag: DVU1950
Name: iorB
Funciton: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
Locus tag: DVU1949
Name: nifA-1
Funciton: transcriptional regulator, NifA subfamily, Fis Family
DVU1952
hypothetical protein
DVU1951
iorA
indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
DVU1950
iorB
indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
DVU1949
nifA-1
transcriptional regulator, NifA subfamily, Fis Family
Position: -355
Score: 4.8
Sequence: GTTACATTTTTGTAAT
Locus tag: DVU0671
Name: DVU0671
Funciton: Ferredoxin-dependent glutamate synthase
DVU0671
DVU0671
Ferredoxin-dependent glutamate synthase
Position: -230
Score: 4.2
Sequence: TAGACAAAAATGTTAC
Position: -178
Score: 4
Sequence: TTGCCATTTTTGATAT
Locus tag: DVU3290
Name: null
Funciton: putative glutamate synthase, large subunit (domain 1)
Locus tag: DVU3291
Name: null
Funciton: glutamate synthase, iron-sulfur cluster-binding subunit, putative
Locus tag: DVU3292
Name: null
Funciton: glutamate synthase alpha subunit domain protein
DVU3290
putative glutamate synthase, large subunit (domain 1)
DVU3291
glutamate synthase, iron-sulfur cluster-binding subunit, putative
DVU3292
glutamate synthase alpha subunit domain protein
Position: -403
Score: 3.7
Sequence: TTGTCTTGTTTGTAAA
Position: -248
Score: 4.1
Sequence: ATTACTTTTTTGTCAC
Locus tag: DVU2343
Name: glnQ
Funciton: ABC-type polar amino acid transport system, ATPase component
Locus tag: DVU2342
Name: null
Funciton: amino acid ABC transporter, periplasmic amino acid-binding protein
Locus tag: DVU2341
Name: gltJ
Funciton: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
Locus tag: DVU2340
Name: null
Funciton: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
DVU2343
glnQ
ABC-type polar amino acid transport system, ATPase component
DVU2342
amino acid ABC transporter, periplasmic amino acid-binding protein
DVU2341
gltJ
amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
DVU2340
amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
Position: -240
Score: 4.1
Sequence: GTCTCAAAATTGTAAA
Locus tag: DVU1823
Name: gltB-1
Funciton: Glutamate synthase, large subunit (gltB-1)
Locus tag: DVU1822
Name: null
Funciton: glutamate synthase, amidotransferase subunit, putative
Locus tag: DVU1821
Name: gltB
Funciton: Glutamate synthase, large subunit (gltB)
DVU1823
gltB-1
Glutamate synthase, large subunit (gltB-1)
DVU1822
glutamate synthase, amidotransferase subunit, putative
DVU1821
gltB
Glutamate synthase, large subunit (gltB)
Position: -246
Score: 4.1
Sequence: TTGACGTTTTTGAAAT
Position: -106
Score: 4.8
Sequence: ATGACAGTTTTGTAAA
Locus tag: DVU0753
Name: null
Funciton: amino acid ABC transporter, ATP-binding protein
Locus tag: DVU0752
Name: null
Funciton: amino acid ABC transporter, amino acid-binding protein
Locus tag: DVU0751
Name: null
Funciton: Glutamine-binding periplasmic protein/glutamine transport system permease protein
DVU0753
amino acid ABC transporter, ATP-binding protein
DVU0752
amino acid ABC transporter, amino acid-binding protein
DVU0751
Glutamine-binding periplasmic protein/glutamine transport system permease protein
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