Regulon of NifA-1 in Desulfovibrio vulgaris str. Miyazaki F
| Regulator type: | Transcription factor |
| TF locus tag: | DvMF_0608 |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | Nitrogen assimilation |
| Effector: | |
| Regulog: | NifA-1 - Desulfovibrionales |
| Statistics of regulated genes: | |
| - Genes | 25 |
| - Operons | 11 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -203
Score: 4.9 Sequence: TTTACAATGATGTCAA
Locus tag: DvMF_2099
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
|||
|
glnA
|
Glutamine synthetase type I (EC 6.3.1.2)
|
||
|
Position: -369
Score: 3.7 Sequence: TTCGCGAAATTGTAAA
Locus tag: DvMF_2665
Name: DVU0671 Funciton: Ferredoxin-dependent glutamate synthase |
|||
|
DVU0671
|
Ferredoxin-dependent glutamate synthase
|
||
|
Position: -340
Score: 4.6 Sequence: TTTACGTTTTTGTTAA
Position: -67
Score: 4.7 Sequence: CTGACAATATGGTAAA
Locus tag: DvMF_3151
Name: glnQ Funciton: ABC-type polar amino acid transport system, ATPase component
Locus tag: DvMF_3152
Name: null Funciton: amino acid ABC transporter, periplasmic amino acid-binding protein
Locus tag: DvMF_3153
Name: gltJ Funciton: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
Locus tag: DvMF_3154
Name: null Funciton: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family |
|||
|
glnQ
|
ABC-type polar amino acid transport system, ATPase component
|
||
|
amino acid ABC transporter, periplasmic amino acid-binding protein
|
|||
|
gltJ
|
amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
|
||
|
amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
|
|||
|
Position: -208
Score: 4.1 Sequence: TTTACAAAAAAGAAAC
Position: -176
Score: 4.3 Sequence: GTTACCAAAATGGAAA
Position: -175
Score: 3.9 Sequence: TTACCAAAATGGAAAA
Locus tag: DvMF_0866
Name: amtB Funciton: Ammonium transporter
Locus tag: DvMF_0865
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: DvMF_0864
Name: glnD Funciton: UTP-GlnB uridylyltransferase, GlnD |
|||
|
amtB
|
Ammonium transporter
|
||
|
glnB
|
Nitrogen regulatory protein P-II
|
||
|
glnD
|
UTP-GlnB uridylyltransferase, GlnD
|
||
|
Position: -176
Score: 4.1 Sequence: GTGGCAAAAATGTAAT
Position: -153
Score: 4.2 Sequence: AGTACAAATATGTAAT
Position: -101
Score: 3.8 Sequence: TTGCCGTTTTTGGAAT
Locus tag: DvMF_2387
Name: null Funciton: putative glutamate synthase, large subunit (domain 1)
Locus tag: DvMF_2388
Name: null Funciton: glutamate synthase, iron-sulfur cluster-binding subunit, putative |
|||
|
putative glutamate synthase, large subunit (domain 1)
|
|||
|
glutamate synthase, iron-sulfur cluster-binding subunit, putative
|
|||
|
Position: -305
Score: 4.1 Sequence: CTGACAATTTCGCAAA
Position: -177
Score: 4.2 Sequence: GAAACATTAATGTCAA
Locus tag: DvMF_2788
Name: null Funciton: amino acid ABC transporter, ATP-binding protein
Locus tag: DvMF_2787
Name: null Funciton: amino acid ABC transporter, amino acid-binding protein
Locus tag: DvMF_2786
Name: null Funciton: Glutamine-binding periplasmic protein/glutamine transport system permease protein |
|||
|
amino acid ABC transporter, ATP-binding protein
|
|||
|
amino acid ABC transporter, amino acid-binding protein
|
|||
|
Glutamine-binding periplasmic protein/glutamine transport system permease protein
|
|||
|
Position: -170
Score: 3.6 Sequence: TATTCAAAAATGGTAT
Position: -138
Score: 4.4 Sequence: TTTCGATAATTGTAAA
Locus tag: DvMF_2528
Name: nifA-2 Funciton: transcriptional regulator, NifA, Fis Family |
|||
|
nifA-2
|
transcriptional regulator, NifA, Fis Family
|
||
|
Position: -332
Score: 3.9 Sequence: GTTACAAGTTTGCAAA
Position: -288
Score: 3.9 Sequence: TGAACGAATTTGTAAA
Position: -54
Score: 4 Sequence: GAAACAAATTTGTAAG
Locus tag: DvMF_1590
Name: glnN Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2) |
|||
|
glnN
|
Glutamine synthetase type III, GlnN (EC 6.3.1.2)
|
||
|
Position: -419
Score: 4.8 Sequence: TTTTCAAAAATGTAAT
Position: -270
Score: 4.1 Sequence: AATGCAAATATGTAAA
Position: -238
Score: 4.4 Sequence: TATACAAAAATGTTAT
Locus tag: DvMF_3023
Name: amtB2 Funciton: Ammonium transporter
Locus tag: DvMF_3024
Name: glnB2 Funciton: Nitrogen regulatory protein P-II |
|||
|
amtB2
|
Ammonium transporter
|
||
|
glnB2
|
Nitrogen regulatory protein P-II
|
||
|
Position: -92
Score: 4.8 Sequence: TTGACATTTCTGTAAT
Locus tag: DvMF_0611
Name: null Funciton: hypothetical protein
Locus tag: DvMF_0610
Name: iorA Funciton: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
Locus tag: DvMF_0609
Name: iorB Funciton: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
Locus tag: DvMF_0608
Name: nifA-1 Funciton: transcriptional regulator, NifA subfamily, Fis Family |
|||
|
hypothetical protein
|
|||
|
iorA
|
indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
|
||
|
iorB
|
indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
|
||
|
nifA-1
|
transcriptional regulator, NifA subfamily, Fis Family
|
||
|
Position: -403
Score: 3.5 Sequence: AGAACAAAAATGTTAT
Locus tag: DvMF_0546
Name: gltB-1 Funciton: Glutamate synthase, large subunit (gltB-1)
Locus tag: DvMF_0545
Name: null Funciton: glutamate synthase, amidotransferase subunit, putative
Locus tag: DvMF_0544
Name: gltB Funciton: Glutamate synthase, large subunit (gltB) |
|||
|
gltB-1
|
Glutamate synthase, large subunit (gltB-1)
|
||
|
glutamate synthase, amidotransferase subunit, putative
|
|||
|
gltB
|
Glutamate synthase, large subunit (gltB)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |