Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NifA-1 in Desulfovibrio vulgaris str. Miyazaki F

Properties
Regulator type: Transcription factor
TF locus tag: DvMF_0608
Regulator family: Fis
Regulation mode:
Biological process: Nitrogen assimilation
Effector:
Regulog: NifA-1 - Desulfovibrionales
Statistics of regulated genes:
- Genes 25
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 101 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -203
Score: 4.9
Sequence: TTTACAATGATGTCAA
Locus tag: DvMF_2099
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
DvMF_2099
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -369
Score: 3.7
Sequence: TTCGCGAAATTGTAAA
Locus tag: DvMF_2665
Name: DVU0671
Funciton: Ferredoxin-dependent glutamate synthase
DvMF_2665
DVU0671
Ferredoxin-dependent glutamate synthase
Position: -340
Score: 4.6
Sequence: TTTACGTTTTTGTTAA
Position: -67
Score: 4.7
Sequence: CTGACAATATGGTAAA
Locus tag: DvMF_3151
Name: glnQ
Funciton: ABC-type polar amino acid transport system, ATPase component
Locus tag: DvMF_3152
Name: null
Funciton: amino acid ABC transporter, periplasmic amino acid-binding protein
Locus tag: DvMF_3153
Name: gltJ
Funciton: amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
Locus tag: DvMF_3154
Name: null
Funciton: amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
DvMF_3151
glnQ
ABC-type polar amino acid transport system, ATPase component
DvMF_3152
amino acid ABC transporter, periplasmic amino acid-binding protein
DvMF_3153
gltJ
amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family
DvMF_3154
amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family
Position: -208
Score: 4.1
Sequence: TTTACAAAAAAGAAAC
Position: -176
Score: 4.3
Sequence: GTTACCAAAATGGAAA
Position: -175
Score: 3.9
Sequence: TTACCAAAATGGAAAA
Locus tag: DvMF_0866
Name: amtB
Funciton: Ammonium transporter
Locus tag: DvMF_0865
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: DvMF_0864
Name: glnD
Funciton: UTP-GlnB uridylyltransferase, GlnD
DvMF_0866
amtB
Ammonium transporter
DvMF_0865
glnB
Nitrogen regulatory protein P-II
DvMF_0864
glnD
UTP-GlnB uridylyltransferase, GlnD
Position: -176
Score: 4.1
Sequence: GTGGCAAAAATGTAAT
Position: -153
Score: 4.2
Sequence: AGTACAAATATGTAAT
Position: -101
Score: 3.8
Sequence: TTGCCGTTTTTGGAAT
Locus tag: DvMF_2387
Name: null
Funciton: putative glutamate synthase, large subunit (domain 1)
Locus tag: DvMF_2388
Name: null
Funciton: glutamate synthase, iron-sulfur cluster-binding subunit, putative
DvMF_2387
putative glutamate synthase, large subunit (domain 1)
DvMF_2388
glutamate synthase, iron-sulfur cluster-binding subunit, putative
Position: -305
Score: 4.1
Sequence: CTGACAATTTCGCAAA
Position: -177
Score: 4.2
Sequence: GAAACATTAATGTCAA
Locus tag: DvMF_2788
Name: null
Funciton: amino acid ABC transporter, ATP-binding protein
Locus tag: DvMF_2787
Name: null
Funciton: amino acid ABC transporter, amino acid-binding protein
Locus tag: DvMF_2786
Name: null
Funciton: Glutamine-binding periplasmic protein/glutamine transport system permease protein
DvMF_2788
amino acid ABC transporter, ATP-binding protein
DvMF_2787
amino acid ABC transporter, amino acid-binding protein
DvMF_2786
Glutamine-binding periplasmic protein/glutamine transport system permease protein
Position: -170
Score: 3.6
Sequence: TATTCAAAAATGGTAT
Position: -138
Score: 4.4
Sequence: TTTCGATAATTGTAAA
Locus tag: DvMF_2528
Name: nifA-2
Funciton: transcriptional regulator, NifA, Fis Family
DvMF_2528
nifA-2
transcriptional regulator, NifA, Fis Family
Position: -332
Score: 3.9
Sequence: GTTACAAGTTTGCAAA
Position: -288
Score: 3.9
Sequence: TGAACGAATTTGTAAA
Position: -54
Score: 4
Sequence: GAAACAAATTTGTAAG
Locus tag: DvMF_1590
Name: glnN
Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
DvMF_1590
glnN
Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Position: -419
Score: 4.8
Sequence: TTTTCAAAAATGTAAT
Position: -270
Score: 4.1
Sequence: AATGCAAATATGTAAA
Position: -238
Score: 4.4
Sequence: TATACAAAAATGTTAT
Locus tag: DvMF_3023
Name: amtB2
Funciton: Ammonium transporter
Locus tag: DvMF_3024
Name: glnB2
Funciton: Nitrogen regulatory protein P-II
DvMF_3023
amtB2
Ammonium transporter
DvMF_3024
glnB2
Nitrogen regulatory protein P-II
Position: -92
Score: 4.8
Sequence: TTGACATTTCTGTAAT
Locus tag: DvMF_0611
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_0610
Name: iorA
Funciton: indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
Locus tag: DvMF_0609
Name: iorB
Funciton: indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
Locus tag: DvMF_0608
Name: nifA-1
Funciton: transcriptional regulator, NifA subfamily, Fis Family
DvMF_0611
hypothetical protein
DvMF_0610
iorA
indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
DvMF_0609
iorB
indolepyruvate ferredoxin oxidoreductase, beta subunit, putative
DvMF_0608
nifA-1
transcriptional regulator, NifA subfamily, Fis Family
Position: -403
Score: 3.5
Sequence: AGAACAAAAATGTTAT
Locus tag: DvMF_0546
Name: gltB-1
Funciton: Glutamate synthase, large subunit (gltB-1)
Locus tag: DvMF_0545
Name: null
Funciton: glutamate synthase, amidotransferase subunit, putative
Locus tag: DvMF_0544
Name: gltB
Funciton: Glutamate synthase, large subunit (gltB)
DvMF_0546
gltB-1
Glutamate synthase, large subunit (gltB-1)
DvMF_0545
glutamate synthase, amidotransferase subunit, putative
DvMF_0544
gltB
Glutamate synthase, large subunit (gltB)
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