Regulog DVU2114 - Desulfovibrionales

Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
Genome | Genes | Operons |
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Desulfohalobium retbaense DSM 5692 | 4 | 1 |
Desulfomicrobium baculatum DSM 4028 | ||
Desulfovibrio desulfuricans G20 | 28 | 2 |
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
Desulfovibrio magneticus RS-1 | 20 | 4 |
Desulfovibrio piger ATCC 29098 | ||
Desulfovibrio salexigens DSM 2638 | ||
Desulfovibrio vulgaris Hildenborough | 33 | 3 |
Desulfovibrio vulgaris str. Miyazaki F | 35 | 2 |
Lawsonia intracellularis PHE/MN1-00 |
Genes | Function | ||||||||||
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CRON 1. | |||||||||||
DvMF_2747 |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -338 score = 5.36769 sequence = GATCCAAGAATCCTAGATT Site: position = -235 score = 5.23703 sequence = ACTCCAAGATTTGTGGATT Gene: DvMF_2747: Flp pilus assembly protein, pilin Flp |
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Flp pilus assembly protein, pilin Flp |
DvMF_2746 |
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Gene: DvMF_2746: Flp pilus assembly protein, pilin Flp |
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Flp pilus assembly protein, pilin Flp |
DvMF_2745 |
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Gene: DvMF_2745: Flp pilus assembly protein, pilin Flp |
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Flp pilus assembly protein, pilin Flp |
DvMF_2744 |
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Gene: DvMF_2744: Flp pilus assembly protein, pilin Flp |
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Flp pilus assembly protein, pilin Flp |
Dret_1170 |
Gene: Dret_1170: peptidase A24A prepilin type IV |
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Gene: Dde_2358: Type IV prepilin peptidase TadV/CpaA |
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Gene: DMR_35040: hypothetical membrane protein |
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Gene: DVU2117: Type IV prepilin peptidase TadV/CpaA |
Gene: DvMF_2743: Type IV prepilin peptidase TadV/CpaA |
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peptidase A24A prepilin type IV |
Dret_1168 |
Gene: Dret_1168: Flp pilus assembly protein CpaB |
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Gene: Dde_2359: Flp pilus assembly protein RcpC/CpaB |
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Gene: DMR_33860: Flp pilus assembly CpaB domain protein |
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Gene: DVU2118: Flp pilus assembly protein RcpC/CpaB |
Gene: DvMF_2742: Flp pilus assembly protein RcpC/CpaB |
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Flp pilus assembly protein CpaB |
cpaC |
Gene: Dret_1167: type II and III secretion system protein |
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Gene: Dde_2360: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
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Gene: DMR_33850: bacterial type II and III secretion system protein family protein |
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Gene: DVU2119: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
Gene: DvMF_2741: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
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type II and III secretion system protein |
DVU2120 |
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Gene: DVU2120: hypothetical protein |
Gene: DvMF_2740: hypothetical protein |
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hypothetical protein |
Dret_1162 |
Gene: Dret_1162: response regulator receiver protein |
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Gene: Dde_2362: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
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Gene: DMR_33830: hypothetical protein |
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Gene: DVU2121: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
Gene: DvMF_2739: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
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response regulator receiver protein |
cpaF |
Gene: Dret_1161: type II secretion system protein E |
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Gene: Dde_2363: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily |
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Gene: DMR_33820: type II/IV secretion system protein family protein |
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Gene: DVU2122: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily |
Gene: DvMF_2738: type II/IV secretion system protein |
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type II secretion system protein E |
Dret_1160 |
Gene: Dret_1160: Type II secretion system F domain protein |
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Gene: Dde_2364: Flp pilus assembly protein TadB |
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Gene: DMR_33810: hypothetical membrane protein |
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Gene: DVU2123: Flp pilus assembly protein TadB |
Gene: DvMF_2737: Flp pilus assembly protein TadB |
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Type II secretion system F domain protein |
Dret_1159 |
Gene: Dret_1159: Type II secretion system F domain protein |
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Gene: Dde_2365: Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
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Gene: DMR_33800: hypothetical membrane protein |
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Gene: DVU2124: Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
Gene: DvMF_2736: Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
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Type II secretion system F domain protein |
Dret_1158 |
Gene: Dret_1158: TPR repeat-containing protein |
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Gene: Dde_2366: Flp pilus assembly protein TadD, contains TPR repeat |
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Desulfovibrio magneticus RS-1 Site: position = -76 score = 4.06235 sequence = GTTCCAGCAATCGTGGACT Gene: DMR_33740: hypothetical protein |
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Gene: DVU2125: Flp pilus assembly protein TadD, contains TPR repeat |
Gene: DvMF_2735: Flp pilus assembly protein TadD, contains TPR repeat |
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TPR repeat-containing protein |
DvMF_2734 |
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Gene: DvMF_2734: hypothetical protein |
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hypothetical protein |
DMR_33760 |
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Gene: DMR_33760: hypothetical protein |
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Gene: DvMF_2733: Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
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hypothetical protein |
Dde_2369 |
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Gene: Dde_2369: Similar to TadZ/CpaE, associated with Flp pilus assembly |
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Gene: DVU2128: Similar to TadZ/CpaE, associated with Flp pilus assembly |
Gene: DvMF_2732: Similar to TadZ/CpaE, associated with Flp pilus assembly |
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Similar to TadZ/CpaE, associated with Flp pilus assembly |
DvMF_2731 |
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Gene: DvMF_2731: multi-sensor hybrid histidine kinase |
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multi-sensor hybrid histidine kinase |
Dde_3506 |
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Gene: Dde_3506: hypothetical protein |
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Gene: DvMF_2730: hypothetical protein |
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hypothetical protein |
ort_7960722 |
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Desulfovibrio vulgaris Hildenborough Site: position = -287 score = 5.25339 sequence = ACTCTACAAATCATAGATG Site: position = -211 score = 4.71453 sequence = AATCTACAGAACGTAGACA Gene: null |
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unknown |
Dde_2357 |
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Desulfovibrio desulfuricans G20 Site: position = -289 score = 4.85927 sequence = CATCTATTTTTTTTAGACT Site: position = -219 score = 5.26855 sequence = GGTCTATAAATTTTAGATA Gene: Dde_2357: Flp pilus assembly protein, pilin Flp |
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Gene: DVU2116: Flp pilus assembly protein, pilin Flp |
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Flp pilus assembly protein, pilin Flp |
Dde_2367 |
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Gene: Dde_2367: hypothetical protein |
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Gene: DVU2126: hypothetical protein |
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hypothetical protein |
Dde_2368 |
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Gene: Dde_2368: Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
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Gene: DVU2127: Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
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Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
cckA |
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Gene: Dde_2370: PAS/PAC sensor hybrid histidine kinase |
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Gene: DVU2129: sensory box histidine kinase/response regulator |
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PAS/PAC sensor hybrid histidine kinase |
Dde_2361 |
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Gene: Dde_2361: hypothetical protein |
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hypothetical protein |
DMR_33730 |
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Gene: DMR_33730: two-component hybrid sensor and regulator |
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two-component hybrid sensor and regulator |
DMR_33720 |
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Gene: DMR_33720: hypothetical protein |
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hypothetical protein |
DMR_33710 |
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Gene: DMR_33710: putative transglycosylase |
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putative transglycosylase |
bcp |
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Gene: DMR_33700: putative peroxiredoxin |
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putative peroxiredoxin |
DMR_33690 |
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Gene: DMR_33690: hypothetical protein |
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hypothetical protein |
DMR_06420 |
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Desulfovibrio magneticus RS-1 Site: position = -188 score = 4.35052 sequence = ACTCCATTATTGCTGGATC Gene: DMR_06420: Flp/Fap pilin component family protein |
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Flp/Fap pilin component family protein |
DMR_06410 |
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Gene: DMR_06410: Flp/Fap pilin component family protein |
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Flp/Fap pilin component family protein |
DMR_06400 |
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Gene: DMR_06400: Flp/Fap pilin component family protein |
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Flp/Fap pilin component family protein |
DMR_06390 |
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Gene: DMR_06390: Flp/Fap pilin component family protein |
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Flp/Fap pilin component family protein |
DMR_06380 |
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Gene: DMR_06380: Flp/Fap pilin component family protein |
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Flp/Fap pilin component family protein |
Dret_1172 |
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Desulfohalobium retbaense DSM 5692 Site: position = -265 score = 4.13199 sequence = AATCTAATTTTTCGAGAGA Gene: Dret_1172: Flp/Fap pilin component |
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Flp/Fap pilin component |
Dret_1171 |
Gene: Dret_1171: Flp/Fap pilin component |
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Flp/Fap pilin component |
Dret_1169 |
Gene: Dret_1169: transposase IS4 family protein |
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transposase IS4 family protein |
DMR_33750 |
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Desulfovibrio magneticus RS-1 Site: position = -119 score = 4.06235 sequence = AGTCCACGATTGCTGGAAC Gene: DMR_33750: hypothetical protein |
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hypothetical protein |
DMR_33770 |
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Gene: DMR_33770: hypothetical protein |
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hypothetical protein |
DMR_33780 |
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Gene: DMR_33780: hypothetical protein |
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hypothetical protein |
CRON 2. | |||||||||||
DVU2116 |
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Desulfohalobium retbaense DSM 5692 Gene: Dret_1172: Flp pilus assembly protein, pilin Flp Gene: Dret_1171: Flp pilus assembly protein, pilin Flp |
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Desulfovibrio desulfuricans G20 Site: position = -289 score = 4.85927 sequence = CATCTATTTTTTTTAGACT Site: position = -219 score = 5.26855 sequence = GGTCTATAAATTTTAGATA Gene: Dde_2357: Flp pilus assembly protein, pilin Flp |
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*5
Desulfovibrio magneticus RS-1 Gene: DMR_06410: Flp pilus assembly protein, pilin Flp Gene: DMR_06400: Flp pilus assembly protein, pilin Flp Site: position = -188 score = 4.35052 sequence = ACTCCATTATTGCTGGATC Gene: DMR_06420: Flp pilus assembly protein, pilin Flp Gene: DMR_06390: Flp pilus assembly protein, pilin Flp Gene: DMR_06380: Flp pilus assembly protein, pilin Flp |
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Desulfovibrio vulgaris Hildenborough Gene: DVU2116: Flp pilus assembly protein, pilin Flp Site: position = -211 score = 4.71453 sequence = AATCTACAGAACGTAGACA Site: position = -287 score = 5.25339 sequence = ACTCTACAAATCATAGATG Gene: null: Flp pilus assembly protein, pilin Flp |
*4
Desulfovibrio vulgaris str. Miyazaki F Site: position = -235 score = 5.23703 sequence = ACTCCAAGATTTGTGGATT Site: position = -338 score = 5.36769 sequence = GATCCAAGAATCCTAGATT Gene: DvMF_2747: Flp pilus assembly protein, pilin Flp Gene: DvMF_2746: Flp pilus assembly protein, pilin Flp Gene: DvMF_2745: Flp pilus assembly protein, pilin Flp Gene: DvMF_2744: Flp pilus assembly protein, pilin Flp |
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Flp pilus assembly protein, pilin Flp |
DVU2117 |
Gene: Dret_1170: Type IV prepilin peptidase TadV/CpaA |
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Gene: Dde_2358: Type IV prepilin peptidase TadV/CpaA |
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Gene: DMR_35040: Type IV prepilin peptidase TadV/CpaA |
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Gene: DVU2117: Type IV prepilin peptidase TadV/CpaA |
Gene: DvMF_2743: Type IV prepilin peptidase TadV/CpaA |
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Type IV prepilin peptidase TadV/CpaA |
DVU2118 |
Gene: Dret_1168: Flp pilus assembly protein RcpC/CpaB |
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Gene: Dde_2359: Flp pilus assembly protein RcpC/CpaB |
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Gene: DMR_33860: Flp pilus assembly protein RcpC/CpaB |
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Gene: DVU2118: Flp pilus assembly protein RcpC/CpaB |
Gene: DvMF_2742: Flp pilus assembly protein RcpC/CpaB |
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Flp pilus assembly protein RcpC/CpaB |
cpaC |
Gene: Dret_1167: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
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Gene: Dde_2360: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
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Gene: DMR_33850: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
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Gene: DVU2119: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
Gene: DvMF_2741: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
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Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly |
DVU2120 |
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Gene: Dde_2361: hypothetical protein |
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Gene: DMR_33840: hypothetical protein |
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Gene: DVU2120: hypothetical protein |
Gene: DvMF_2740: hypothetical protein |
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hypothetical protein |
DVU2121 |
Gene: Dret_1162: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
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Gene: Dde_2362: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
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Gene: DMR_33830: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
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Gene: DVU2121: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
Gene: DvMF_2739: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
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Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly |
cpaF |
Gene: Dret_1161: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily |
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Gene: Dde_2363: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily |
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Gene: DMR_33820: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily |
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Gene: DVU2122: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily |
Gene: DvMF_2738: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily |
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Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily |
DVU2123 |
Gene: Dret_1160: Flp pilus assembly protein TadB |
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Gene: Dde_2364: Flp pilus assembly protein TadB |
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Gene: DMR_33810: Flp pilus assembly protein TadB |
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Gene: DVU2123: Flp pilus assembly protein TadB |
Gene: DvMF_2737: Flp pilus assembly protein TadB |
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Flp pilus assembly protein TadB |
DVU2124 |
Gene: Dret_1159: Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
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Gene: Dde_2365: Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
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Gene: DMR_33800: Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
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Gene: DVU2124: Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
Gene: DvMF_2736: Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
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Type II/IV secretion system protein TadC, associated with Flp pilus assembly |
DVU2125 |
Gene: Dret_1158: Flp pilus assembly protein TadD, contains TPR repeat |
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Gene: Dde_2366: Flp pilus assembly protein TadD, contains TPR repeat |
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Gene: DMR_33740: Flp pilus assembly protein TadD, contains TPR repeat |
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Gene: DVU2125: Flp pilus assembly protein TadD, contains TPR repeat |
Gene: DvMF_2735: Flp pilus assembly protein TadD, contains TPR repeat |
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Flp pilus assembly protein TadD, contains TPR repeat |
DVU2126 |
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Gene: Dde_2367: hypothetical protein |
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Gene: DMR_33750: hypothetical protein |
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Gene: DVU2126: hypothetical protein |
Gene: DvMF_2734: hypothetical protein |
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hypothetical protein |
DVU2127 |
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Gene: Dde_2368: Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
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Gene: DMR_33760: Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
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Gene: DVU2127: Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
Gene: DvMF_2733: Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
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Von Willebrand factor type A domain protein, associated with Flp pilus assembly |
DVU2128 |
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Gene: Dde_2369: Similar to TadZ/CpaE, associated with Flp pilus assembly |
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Gene: DMR_33770: Similar to TadZ/CpaE, associated with Flp pilus assembly |
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Gene: DVU2128: Similar to TadZ/CpaE, associated with Flp pilus assembly |
Gene: DvMF_2732: Similar to TadZ/CpaE, associated with Flp pilus assembly |
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Similar to TadZ/CpaE, associated with Flp pilus assembly |
DVU2129 |
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Gene: Dde_2370: sensory box histidine kinase/response regulator |
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Gene: DMR_33730: sensory box histidine kinase/response regulator |
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Gene: DVU2129: sensory box histidine kinase/response regulator |
Gene: DvMF_2731: sensory box histidine kinase/response regulator |
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sensory box histidine kinase/response regulator |
CRON 3. | |||||||||||
DVU3342 |
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Desulfovibrio vulgaris Hildenborough Site: position = -235 score = 4.85245 sequence = TTTCTAAAAATCGTAGAGT Gene: DVU3342: hypothetical protein |
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hypothetical protein |
DVU3343 |
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Gene: DVU3343: hypothetical protein |
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hypothetical protein |
DVU3344 |
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Gene: DMR_14150: hypothetical protein |
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Gene: DVU3344: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |