Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RpoN in Desulfovibrio vulgaris Hildenborough

Properties
Regulator type: Transcription factor
TF locus tag: DVU1628
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Regulog: RpoN - Desulfovibrionales
Statistics of regulated genes:
- Genes 266
- Operons 81
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 487 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -70
Score: 5.1
Sequence: GTTGGCCCGGAATTTGCTT
Locus tag: DVU0410
Name: null
Funciton: hypothetical protein
Locus tag: DVU0409
Name: null
Funciton: hypothetical protein
hypothetical protein
hypothetical protein

Position: -92
Score: 4.1
Sequence: GCAGGTGCGGTTCTTGCTA
Locus tag: DVU3387
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -90
Score: 4.2
Sequence: GCAGGCATGACCCTTGCCG
Locus tag: DVU2277
Name: null
Funciton: hypothetical protein
Locus tag: DVU2276
Name: null
Funciton: membrane protein of unknown function DUF81
hypothetical protein
membrane protein of unknown function DUF81

Position: -59
Score: 5.3
Sequence: TCTGGCACGGCTCGTGCTT
Locus tag: DVU0307
Name: flgE
Funciton: Flagellar hook protein FlgE
flgE
Flagellar hook protein FlgE

Position: -200
Score: 4.9
Sequence: GGTGGCCCGATTTTTGCTC
Locus tag: DVU0682
Name: null
Funciton: DNA-binding protein, putative
DNA-binding protein, putative

Position: -91
Score: 5.1
Sequence: TTTGGCACGTTCCCTGCTC
Locus tag: DVU2822
Name: dtcP
Funciton: TRAP-type C4-dicarboxylate transport system, periplasmic component
Locus tag: DVU2823
Name: dctM
Funciton: TRAP dicarboxylate transporter, DctM subunit
Locus tag: DVU2824
Name: null
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: DVU2825
Name: null
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
dtcP
TRAP-type C4-dicarboxylate transport system, periplasmic component
dctM
TRAP dicarboxylate transporter, DctM subunit
Pyruvate formate-lyase (EC 2.3.1.54)
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)

Position: -132
Score: 4.8
Sequence: GCTGGTACGCTTGTTGCTG
Locus tag: DVU2280
Name: null
Funciton: cationic amino acid transporter
cationic amino acid transporter

Position: -115
Score: 4.9
Sequence: TTGGGCATGGCGCTTGCTT
Locus tag: DVU0318
Name: null
Funciton: TPR repeat-containing protein
TPR repeat-containing protein

Position: -56
Score: 4.8
Sequence: CTTGGCACGGGGCTTGTTA
Locus tag: DVU3302
Name: DVU3302
Funciton: hypothetical protein
Locus tag: DVU3301
Name: null
Funciton: hypothetical protein
Locus tag: DVU3300
Name: null
Funciton: hypothetical protein
Locus tag: DVU3299
Name: null
Funciton: TSUP family transporter
Locus tag: DVU3298
Name: null
Funciton: universal stress protein
DVU3302
hypothetical protein
hypothetical protein
hypothetical protein
TSUP family transporter
universal stress protein

Position: -99
Score: 5.1
Sequence: TTTGGCCCCTTCCTTGCTT
Locus tag: DVU2405
Name: adh
Funciton: alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
Locus tag: DVU2404
Name: hdrC
Funciton: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)
Locus tag: DVU2403
Name: hdrB
Funciton: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)
Locus tag: DVU2402
Name: hdrA
Funciton: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)
Locus tag: DVU2401
Name: null
Funciton: Coenzyme F420-reducing hydrogenase, beta subunit
Locus tag: DVU2400
Name: null
Funciton: heterodisulfide reductase, iron-sulfur binding subunit, putative
Locus tag: DVU2399
Name: null
Funciton: Heterodisulfide reductase, cytochrome reductase subunit
adh
alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
hdrC
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)
hdrB
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)
hdrA
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)
Coenzyme F420-reducing hydrogenase, beta subunit
heterodisulfide reductase, iron-sulfur binding subunit, putative
Heterodisulfide reductase, cytochrome reductase subunit

Position: -65
Score: 4.7
Sequence: GCTGGCACGGAACTTGTTA
Locus tag: DVU2957
Name: null
Funciton: hypothetical protein
Locus tag: DVU2958
Name: null
Funciton: protein of unknown function DUF81
Locus tag: DVU2959
Name: null
Funciton: hypothetical membrane protein
Locus tag: DVU2960
Name: ntrC
Funciton: putative sigma54 specific transcriptional regulator
Locus tag: DVU2961
Name: null
Funciton: hypothetical protein
Locus tag: DVU2962
Name: null
Funciton: integral membrane sensor signal transduction histidine kinase
Locus tag: DVU2963
Name: null
Funciton: response regulator receiver protein
Locus tag: DVU2964
Name: null
Funciton: hypothetical protein
Locus tag: DVU2965
Name: null
Funciton: hypothetical protein
Locus tag: DVU2966
Name: null
Funciton: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Locus tag: DVU2967
Name: null
Funciton: response regulator receiver sensor signal transduction histidine kinase
hypothetical protein
protein of unknown function DUF81
hypothetical membrane protein
ntrC
putative sigma54 specific transcriptional regulator
hypothetical protein
integral membrane sensor signal transduction histidine kinase
response regulator receiver protein
hypothetical protein
hypothetical protein
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
response regulator receiver sensor signal transduction histidine kinase

Position: -46
Score: 4.7
Sequence: CCCGGCACGCTTCGTGCTG
Locus tag: DVU2988
Name: pspA
Funciton: Phage shock protein A
Locus tag: DVU2987
Name: pspB
Funciton: phage shock protein B
Locus tag: DVU2986
Name: pspC
Funciton: Phage shock protein C
pspA
Phage shock protein A
pspB
phage shock protein B
pspC
Phage shock protein C

Position: 34
Score: 5
Sequence: TTAGGCACGCATATTGCTT
Locus tag: DVU1854
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -186
Score: 4.3
Sequence: GCTGGAACATTTTCTGCAA
Locus tag: DVU0047
Name: fliL
Funciton: Flagellar basal body-associated protein FliL
Locus tag: DVU0046
Name: fliN
Funciton: Flagellar motor switch protein FliN
Locus tag: DVU0045
Name: null
Funciton: Flagellar biosynthesis protein FliO
Locus tag: DVU0044
Name: fliP
Funciton: Flagellar biosynthesis protein FliP
Locus tag: DVU0043
Name: fliQ
Funciton: Flagellar biosynthesis protein FliQ
fliL
Flagellar basal body-associated protein FliL
fliN
Flagellar motor switch protein FliN
Flagellar biosynthesis protein FliO
fliP
Flagellar biosynthesis protein FliP
fliQ
Flagellar biosynthesis protein FliQ

Position: -110
Score: 4.6
Sequence: TTTGGCACACTTGTCGCTA
Locus tag: DVU1164
Name: amiE
Funciton: Formamidase amiF (EC 3.5.1.49)
amiE
Formamidase amiF (EC 3.5.1.49)

Position: -247
Score: 4.5
Sequence: GTTGGTGCAGTCCTTGCTT
Locus tag: DVU3382
Name: zraS
Funciton: Sensor protein of sigma-54-dependent two-component system
Locus tag: DVU3381
Name: zraR
Funciton: Two component, sigma54 specific, transcriptional regulator, Fis family
zraS
Sensor protein of sigma-54-dependent two-component system
zraR
Two component, sigma54 specific, transcriptional regulator, Fis family

Position: -68
Score: 4.5
Sequence: TCAGGCACAGTTCCTGCTC
Locus tag: DVU3143
Name: null
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: DVU3144
Name: null
Funciton: cytochrome c family protein
Locus tag: DVU3145
Name: b1670
Funciton: Cytochrome B561
4Fe-4S ferredoxin iron-sulfur binding domain protein
cytochrome c family protein
b1670
Cytochrome B561

Position: 26
Score: 4.3
Sequence: CTTGGCATCGGGTCTGCAA
Locus tag: DVUA0016
Name: nifV
Funciton: Pyruvate carboxyltransferase
nifV
Pyruvate carboxyltransferase

Position: -46
Score: 4.4
Sequence: TTCGGCACAGTTCTTTCAT
Locus tag: DVU1418
Name: hydH
Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: DVU1419
Name: atoC
Funciton: two component, sigma54 specific, transcriptional regulator, Fis family
hydH
PAS/PAC sensor signal transduction histidine kinase
atoC
two component, sigma54 specific, transcriptional regulator, Fis family

Position: -211
Score: 4.8
Sequence: CTTGGCCCGGTAATTGCTG
Locus tag: DVU2451
Name: lldP
Funciton: L-lactate permease
lldP
L-lactate permease

Position: -77
Score: 5.2
Sequence: GCTGGCCCGCTTATTGCTT
Locus tag: DVU3004
Name: DVU3004
Funciton: radical SAM domain protein
Locus tag: DVU3005
Name: rfbE
Funciton: aminotransferase, DegT/DnrJ/EryC1/StrS family
Locus tag: DVU3006
Name: spsF
Funciton: acylneuraminate cytidylyltransferase family protein
Locus tag: DVU3007
Name: null
Funciton: hypothetical protein
Locus tag: DVU3008
Name: null
Funciton: N-acetylneuraminate synthase (EC 2.5.1.56)
Locus tag: DVU3009
Name: null
Funciton: radical SAM domain protein
Locus tag: DVU3010
Name: lpsC
Funciton: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-)
Locus tag: DVU3011
Name: null
Funciton: WbqC-like family protein
DVU3004
radical SAM domain protein
rfbE
aminotransferase, DegT/DnrJ/EryC1/StrS family
spsF
acylneuraminate cytidylyltransferase family protein
hypothetical protein
N-acetylneuraminate synthase (EC 2.5.1.56)
radical SAM domain protein
lpsC
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-)
WbqC-like family protein

Position: -199
Score: 4.8
Sequence: GCTGGCACGGGCCTTGTAT
Locus tag: DVU3232
Name: flhA
Funciton: Flagellar biosynthesis pathway, component FlhA
Locus tag: DVU3231
Name: flhF
Funciton: Flagellar biosynthesis protein FlhF
Locus tag: DVU3230
Name: fleN
Funciton: Flagellar synthesis regulator FleN
Locus tag: DVU3229
Name: fliA
Funciton: RNA polymerase, sigma 28 subunit, FliA/WhiG
Locus tag: DVU3228
Name: cheY
Funciton: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
Locus tag: DVU3227
Name: fliL
Funciton: Flagellar biosynthesis protein FliL
Locus tag: DVU3226
Name: null
Funciton: hypothetical protein
Locus tag: DVU3225
Name: null
Funciton: hypothetical protein
flhA
Flagellar biosynthesis pathway, component FlhA
flhF
Flagellar biosynthesis protein FlhF
fleN
Flagellar synthesis regulator FleN
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG
cheY
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
fliL
Flagellar biosynthesis protein FliL
hypothetical protein
hypothetical protein

Position: -68
Score: 4.3
Sequence: TATGGAGTGCTACTTGCAA
Locus tag: DVUA0030
Name: null
Funciton: PEP-CTERM motif protein
PEP-CTERM motif protein

Position: -258
Score: 3.9
Sequence: GGCGGTATGCAACTTGCAA
Locus tag: DVU1152
Name: null
Funciton: PEP-CTERM motif protein
PEP-CTERM motif protein

Position: -220
Score: 4.9
Sequence: GTTGGCACGGATAGTGCTT
Locus tag: DVU3003
Name: null
Funciton: radical SAM domain protein
Locus tag: DVU3002
Name: null
Funciton: Methyltransferase type 12
Locus tag: DVU3001
Name: null
Funciton: conserved domain protein
Locus tag: DVU3000
Name: null
Funciton: hypothetical protein
radical SAM domain protein
Methyltransferase type 12
conserved domain protein
hypothetical protein

Position: -113
Score: 3.8
Sequence: AATGGAGCATTAATTGCTA
Locus tag: DVU3342
Name: null
Funciton: hypothetical protein
Locus tag: DVU3343
Name: null
Funciton: hypothetical protein
Locus tag: DVU3344
Name: null
Funciton: hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein

Position: -82
Score: 3.9
Sequence: TATGGCGCGGGAAATGCAA
Position: -43
Score: 4.5
Sequence: ATTGGAACACTCCTTGTAT
Locus tag: DVU1445
Name: fliK
Funciton: Flagellar hook-length control protein FliK
Locus tag: DVU1444
Name: flgD
Funciton: Flagellar basal-body rod modification protein FlgD
Locus tag: DVU1443
Name: flgE
Funciton: Flagellar hook protein FlgE
fliK
Flagellar hook-length control protein FliK
flgD
Flagellar basal-body rod modification protein FlgD
flgE
Flagellar hook protein FlgE

Position: 29
Score: 4.5
Sequence: TGTGGCACGGTATTGGCTC
Locus tag: DVUA0036
Name: null
Funciton: PEP-CTERM system TPR-repeat lipoprotein
Locus tag: DVUA0037
Name: null
Funciton: Exopolysaccharide production protein Pss (pss)
Locus tag: DVUA0038
Name: b0983
Funciton: polysaccharide export protein, PEP-CTERM sytem-associated
Locus tag: DVUA0039
Name: null
Funciton: Lipopolysaccharide biosynthesis chain length determinant protein
Locus tag: DVUA0040
Name: null
Funciton: Protein-tyrosine kinase (EC 2.7.1.112)
Locus tag: DVUA0041
Name: exeA
Funciton: Secretion ATPase, PEP-CTERM locus subfamily
PEP-CTERM system TPR-repeat lipoprotein
Exopolysaccharide production protein Pss (pss)
b0983
polysaccharide export protein, PEP-CTERM sytem-associated
Lipopolysaccharide biosynthesis chain length determinant protein
Protein-tyrosine kinase (EC 2.7.1.112)
exeA
Secretion ATPase, PEP-CTERM locus subfamily

Position: -153
Score: 4.8
Sequence: ATTGGCACATTTCTTGTTA
Locus tag: DVU3025
Name: por
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Locus tag: DVU3026
Name: lldP
Funciton: L-lactate permease
Locus tag: DVU3027
Name: glcD
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Locus tag: DVU3028
Name: glcF
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Locus tag: DVU3029
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: DVU3030
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
Locus tag: DVU3031
Name: DVU3031
Funciton: BioD-like N-terminal domain of phosphotransacetylase
Locus tag: DVU3032
Name: lldG
Funciton: L-lactate dehydrogenase, hypothetical protein subunit LldG
Locus tag: DVU3033
Name: lldEF
Funciton: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
por
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
lldP
L-lactate permease
glcD
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcF
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
pta
Phosphate acetyltransferase (EC 2.3.1.8)
ackA
Acetate kinase (EC 2.7.2.1)
DVU3031
BioD-like N-terminal domain of phosphotransacetylase
lldG
L-lactate dehydrogenase, hypothetical protein subunit LldG
lldEF
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF

Position: -317
Score: 5.4
Sequence: TTTGGCCTGCCTCTTGCTT
Locus tag: DVU1962
Name: null
Funciton: Methyl-accepting chemotaxis protein McpC, putative
Locus tag: DVU1961
Name: cheW-3
Funciton: chemotaxis protein CheW
Locus tag: DVU1960
Name: cheA-2
Funciton: Signal transduction histidine kinase CheA (EC 2.7.3.-)
Methyl-accepting chemotaxis protein McpC, putative
cheW-3
chemotaxis protein CheW
cheA-2
Signal transduction histidine kinase CheA (EC 2.7.3.-)

Position: -100
Score: 5.2
Sequence: ATTGGCCCGCTCTTTGCTC
Locus tag: DVU1258
Name: glnN
Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
glnN
Glutamine synthetase type III, GlnN (EC 6.3.1.2)

Position: -71
Score: 5.1
Sequence: CGTGGCATGCAGCTTGCTT
Locus tag: DVU0542
Name: null
Funciton: putative universal stress protein
Locus tag: DVU0543
Name: null
Funciton: membrane protein, putative
Locus tag: DVU0544
Name: null
Funciton: hypothetical protein
Locus tag: DVU0545
Name: null
Funciton: UspA domain protein
putative universal stress protein
membrane protein, putative
hypothetical protein
UspA domain protein

Position: -60
Score: 5.1
Sequence: TGTGGCACGCTATCTGCTT
Locus tag: DVU0036
Name: zraP
Funciton: Zinc resistance-associated protein
zraP
Zinc resistance-associated protein

Position: -196
Score: 4
Sequence: GACGGCAAGCCGCCTGCTG
Position: -40
Score: 5.3
Sequence: TCTGGCACATCTTTTGCTT
Locus tag: DVU2917
Name: lpxC
Funciton: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)

Position: -78
Score: 4.7
Sequence: TTTGGCATGAGGGTTGCTC
Locus tag: DORF39640
Name: DORF39640
Funciton: Flp pilus assembly protein, pilin Flp
Locus tag: DVU2116
Name: null
Funciton: Flp pilus assembly protein, pilin Flp
Locus tag: DVU2117
Name: null
Funciton: Type IV prepilin peptidase TadV/CpaA
Locus tag: DVU2118
Name: null
Funciton: Flp pilus assembly protein RcpC/CpaB
Locus tag: DVU2119
Name: cpaC
Funciton: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
Locus tag: DVU2120
Name: null
Funciton: hypothetical protein
Locus tag: DVU2121
Name: null
Funciton: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly
Locus tag: DVU2122
Name: cpaF
Funciton: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
Locus tag: DVU2123
Name: null
Funciton: Flp pilus assembly protein TadB
Locus tag: DVU2124
Name: null
Funciton: Type II/IV secretion system protein TadC, associated with Flp pilus assembly
Locus tag: DVU2125
Name: null
Funciton: Flp pilus assembly protein TadD, contains TPR repeat
Locus tag: DVU2126
Name: null
Funciton: hypothetical protein
Locus tag: DVU2127
Name: null
Funciton: Von Willebrand factor type A domain protein, associated with Flp pilus assembly
Locus tag: DVU2128
Name: null
Funciton: Similar to TadZ/CpaE, associated with Flp pilus assembly
Locus tag: DVU2129
Name: cckA
Funciton: sensory box histidine kinase/response regulator
DORF39640
Flp pilus assembly protein, pilin Flp
Flp pilus assembly protein, pilin Flp
Type IV prepilin peptidase TadV/CpaA
Flp pilus assembly protein RcpC/CpaB
cpaC
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
hypothetical protein
Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly
cpaF
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
Flp pilus assembly protein TadB
Type II/IV secretion system protein TadC, associated with Flp pilus assembly
Flp pilus assembly protein TadD, contains TPR repeat
hypothetical protein
Von Willebrand factor type A domain protein, associated with Flp pilus assembly
Similar to TadZ/CpaE, associated with Flp pilus assembly
cckA
sensory box histidine kinase/response regulator

Position: -51
Score: 4.9
Sequence: TATGGAATGCAATTTGCTT
Locus tag: DVUA0089
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -82
Score: 5.2
Sequence: TTTGGCACGCTCCATGCTC
Locus tag: DVU3384
Name: zraP
Funciton: Zinc resistance-associated protein
zraP
Zinc resistance-associated protein

Position: -62
Score: 4.6
Sequence: CATGGCATACTTGCTGCTA
Locus tag: DVUA203
Name: DVUA203
Funciton: hypothetical protein
Locus tag: DVUA0109
Name: null
Funciton: Type III secretion chaperone protein for YopD (SycD)
Locus tag: DVUA0110
Name: null
Funciton: Type III secretion host injection protein (YopB)
Locus tag: DVUA0111
Name: null
Funciton: Type III secretion host injection and negative regulator protein (YopD)
Locus tag: DVUA201
Name: DVUA201 (DVUA0111.1)
Funciton: Tir chaperone family protein
Locus tag: DVUA0112
Name: null
Funciton: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
Locus tag: DVUA0113
Name: null
Funciton: Type III secretion inner membrane protein (YscD,homologous to flagellar export components)
Locus tag: DVUA0114
Name: null
Funciton: hypothetical protein
Locus tag: DVUA0115
Name: null
Funciton: Type III secretion system protein, YscF family
Locus tag: DVUA0116
Name: null
Funciton: hypothetical protein
Locus tag: DORF2111
Name: DORF2111
Funciton: null
Locus tag: DVUA0117
Name: escJ
Funciton: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
Locus tag: DVUA200
Name: DVUA200
Funciton: null
Locus tag: DVUA0118
Name: sctL
Funciton: type III secretion protein, YopL family putative type III secretion protein
Locus tag: DVUA0119
Name: sctN
Funciton: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)
Locus tag: DVUA0119.1
Name: DVUA0119.1
Funciton: null
Locus tag: DVUA0120
Name: null
Funciton: HpaP protein; Type III secretion protein (YscP)
Locus tag: DVUA0121
Name: null
Funciton: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)
Locus tag: DVUA0122
Name: yscR
Funciton: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)
Locus tag: DVUA0123
Name: null
Funciton: anti-anti-sigma factor
Locus tag: DVUA0124
Name: rsbW
Funciton: putative anti-sigma regulatory factor, serine/threonine protein kinase
Locus tag: DVUA0125
Name: slt
Funciton: transglycosylase, SLT family
DVUA203
hypothetical protein
Type III secretion chaperone protein for YopD (SycD)
Type III secretion host injection protein (YopB)
Type III secretion host injection and negative regulator protein (YopD)
DVUA201 (DVUA0111.1)
Tir chaperone family protein
Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
Type III secretion inner membrane protein (YscD,homologous to flagellar export components)
hypothetical protein
Type III secretion system protein, YscF family
hypothetical protein
DORF2111
null
escJ
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
DVUA200
null
sctL
type III secretion protein, YopL family putative type III secretion protein
sctN
Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)
DVUA0119.1
null
HpaP protein; Type III secretion protein (YscP)
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)
yscR
Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)
anti-anti-sigma factor
rsbW
putative anti-sigma regulatory factor, serine/threonine protein kinase
slt
transglycosylase, SLT family

Position: -100
Score: 4.5
Sequence: AATGGCACAGTGTATGCTC
Locus tag: DVU2652
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -29
Score: 4.7
Sequence: CGAGGCACGGCTATTGCTT
Locus tag: DVUA0143
Name: nifA-2
Funciton: transcriptional regulator, NifA subfamily, Fis Family
nifA-2
transcriptional regulator, NifA subfamily, Fis Family

Position: -81
Score: 5
Sequence: GTTGGCACGCGACTTGCCT
Locus tag: DVU1231
Name: amt
Funciton: Ammonium transporter
Locus tag: DVU1232
Name: glnB-1
Funciton: Nitrogen regulatory protein P-II
Locus tag: DVU1233
Name: glnD
Funciton: Probable [Protein-PII] uridylyltransferase
amt
Ammonium transporter
glnB-1
Nitrogen regulatory protein P-II
glnD
Probable [Protein-PII] uridylyltransferase

Position: -60
Score: 4.8
Sequence: TCTGGCCCGTTTCCTGCTC
Locus tag: DVU0617
Name: null
Funciton: hypothetical protein
Locus tag: DVU0616
Name: null
Funciton: hypothetical protein
hypothetical protein
hypothetical protein

Position: -54
Score: 4.7
Sequence: CATGGCACTCCATTTGCTC
Locus tag: DVU0123
Name: null
Funciton: membrane protein, putative
Locus tag: DVU0122
Name: null
Funciton: hypothetical protein
Locus tag: DVU0121
Name: null
Funciton: conserved hypothetical protein
membrane protein, putative
hypothetical protein
conserved hypothetical protein

Position: -296
Score: 4.7
Sequence: AATGGCCCGCGTCTTGCCC
Position: -55
Score: 5.1
Sequence: GCTTGCACGCTTCTTGCTT
Locus tag: DVU0320
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -201
Score: 4.9
Sequence: AATGGCACTGCTCTTGCTG
Locus tag: DVU0750
Name: null
Funciton: methyl-accepting chemotaxis protein
methyl-accepting chemotaxis protein

Position: -51
Score: 4.6
Sequence: AATGGAGCGTTTCTTGCTT
Locus tag: DVU2232
Name: null
Funciton: Conserved hypothetical protein
Conserved hypothetical protein

Position: -61
Score: 4.2
Sequence: AGTGGCACGTCAAATGCTC
Locus tag: DVU3339.1
Name: kdpF
Funciton: K+-transporting ATPase, F subunit
Locus tag: DVU3339
Name: kdpA
Funciton: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: DVU3338
Name: kdpB
Funciton: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: DVU3337
Name: kdpC
Funciton: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: DVU3336
Name: kdpD
Funciton: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
Locus tag: DVU3335
Name: null
Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: DVU3334
Name: null
Funciton: two component, sigma54 specific, transcriptional regulator, Fis family
kdpF
K+-transporting ATPase, F subunit
kdpA
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
kdpB
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
kdpC
Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
kdpD
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
PAS/PAC sensor signal transduction histidine kinase
two component, sigma54 specific, transcriptional regulator, Fis family

Position: -69
Score: 5
Sequence: AATGGCCCGCATATTGCTT
Locus tag: DVU1805
Name: null
Funciton: GGDEF domain protein
GGDEF domain protein

Position: -59
Score: 3.9
Sequence: GATGGTATGATATTTGATA
Locus tag: DVU0805
Name: null
Funciton: hypothetical protein
Locus tag: DVU0806
Name: null
Funciton: response regulator receiver protein
hypothetical protein
response regulator receiver protein

Position: -90
Score: 5
Sequence: ACTGGCCCGGATGTTGCTT
Locus tag: DVU1536
Name: mltC
Funciton: Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)
Locus tag: DVU1537
Name: null
Funciton: outer membrane chaperone Skp (OmpH)
mltC
Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)
outer membrane chaperone Skp (OmpH)

Position: -76
Score: 4.9
Sequence: GTTGGAACAGTCATTGCTT
Locus tag: DVUA0032
Name: null
Funciton: hypothetical protein
Locus tag: DVUA0031
Name: null
Funciton: hypothetical protein
hypothetical protein
hypothetical protein

Position: -180
Score: 5.3
Sequence: TTTGGCACGGCCATTGCTC
Locus tag: DVU0150
Name: null
Funciton: hypothetical membrane protein
Locus tag: DVU0149
Name: null
Funciton: hypothetical membrane protein
Locus tag: DVU0148
Name: null
Funciton: lipoprotein, putative
Locus tag: DVU0147
Name: null
Funciton: lipoprotein, putative
Locus tag: DVU0146
Name: null
Funciton: hypothetical protein
hypothetical membrane protein
hypothetical membrane protein
lipoprotein, putative
lipoprotein, putative
hypothetical protein

Position: -70
Score: 4.1
Sequence: GGCGGCATCCACCTTGCCC
Locus tag: DVU1276
Name: null
Funciton: Tfp pilus assembly protein ATPase PilM-like protein
Locus tag: DVU1275
Name: null
Funciton: hypothetical protein
Locus tag: DVU1274
Name: null
Funciton: hypothetical protein
Locus tag: DVU1273
Name: null
Funciton: Type IV pilus biogenesis protein PilQ
Locus tag: DVU1272
Name: gspE
Funciton: Type IV fimbrial assembly, ATPase PilB
Locus tag: DVU1271
Name: null
Funciton: Type IV fimbrial assembly protein PilC
Locus tag: DVU4015
Name: DVU4015
Funciton: Type IV pilin PilA
Locus tag: DVU1270
Name: pilT-1
Funciton: Twitching motility protein PilT
Locus tag: DORF10279
Name: DORF10279
Funciton: hypothetical protein
Locus tag: DVU1268
Name: null
Funciton: Type IV pilin PilA
Locus tag: DVU1267
Name: null
Funciton: hypothetical protein
Locus tag: DVU1266
Name: null
Funciton: hypothetical protein
Tfp pilus assembly protein ATPase PilM-like protein
hypothetical protein
hypothetical protein
Type IV pilus biogenesis protein PilQ
gspE
Type IV fimbrial assembly, ATPase PilB
Type IV fimbrial assembly protein PilC
DVU4015
Type IV pilin PilA
pilT-1
Twitching motility protein PilT
DORF10279
hypothetical protein
Type IV pilin PilA
hypothetical protein
hypothetical protein

Position: -196
Score: 4.7
Sequence: TTCGGCACGCCTTTTGTAA
Locus tag: DVU0624
Name: nrfH
Funciton: Cytochrome c nitrite reductase, small subunit NrfH
Locus tag: DVU0625
Name: nrfA
Funciton: Cytochrome c nitrite reductase, catalytic subunit NrfA
nrfH
Cytochrome c nitrite reductase, small subunit NrfH
nrfA
Cytochrome c nitrite reductase, catalytic subunit NrfA

Position: -58
Score: 4.8
Sequence: CTGGGCATGGTTCTTGCCT
Locus tag: DVU2820
Name: null
Funciton: amidohydrolase family protein
amidohydrolase family protein

Position: -68
Score: 5
Sequence: ATTGGCATGATTCATGCTT
Locus tag: DVU1880
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -72
Score: 4.6
Sequence: AACGGCCCGTTCCTTGCTA
Locus tag: DVU0913
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: DVU0912
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: DVU0911
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
fliJ
Flagellar biosynthesis chaperone FliJ
flbB
Flagellar protein FlbB
truA
tRNA pseudouridine synthase A (EC 4.2.1.70)

Position: -326
Score: 4.7
Sequence: CATGGCACATCCCTTGCCC
Locus tag: DVUA0015
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: DVUA0014
Name: glnB-3
Funciton: Nitrogen regulatory protein P-II
Locus tag: DVUA0013
Name: glnB-2
Funciton: Nitrogen regulatory protein P-II
Locus tag: DVUA0012
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: DVUA0011
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: DVUA0010
Name: null
Funciton: Ferredoxin, 2Fe-2S
Locus tag: DVUA0009
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: DVUA0008
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: DVUA0007
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
glnB-3
Nitrogen regulatory protein P-II
glnB-2
Nitrogen regulatory protein P-II
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Ferredoxin, 2Fe-2S
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
nifB
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB

Position: -232
Score: 4.5
Sequence: CGTGGCATGGCTTGTGCAG
Locus tag: DVU2272
Name: null
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: DVU2271
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Locus tag: DVU2270
Name: null
Funciton: hypothetical protein
Locus tag: DVU2269
Name: null
Funciton: hypothetical protein
Pyruvate formate-lyase (EC 2.3.1.54)
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
hypothetical protein
hypothetical protein

Position: -124
Score: 5
Sequence: GTTGGCAAGGCCTTTGCTA
Locus tag: DVU0571
Name: ald
Funciton: Alanine dehydrogenase (EC 1.4.1.1)
ald
Alanine dehydrogenase (EC 1.4.1.1)

Position: -232
Score: 5.2
Sequence: TATGGCACACCCGTTGCTT
Locus tag: DVU0132
Name: null
Funciton: hypothetical membrane protein
Locus tag: DVU0133
Name: null
Funciton: hypothetical membrane protein
hypothetical membrane protein
hypothetical membrane protein

Position: -79
Score: 4.8
Sequence: AATGGTACGCTGTTTGCTC
Locus tag: DVU0139
Name: cckA
Funciton: integral membrane sensor signal transduction histidine kinase
Locus tag: DVU0140
Name: cheYI
Funciton: response regulator receiver protein
cckA
integral membrane sensor signal transduction histidine kinase
cheYI
response regulator receiver protein

Position: -73
Score: 5.2
Sequence: TCTGGCACGCTTCTTGTTC
Locus tag: DVU0943
Name: null
Funciton: membrane protein, putative
Locus tag: DVU0944
Name: null
Funciton: hypothetical protein
Locus tag: DVU0945
Name: null
Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: DVU0946
Name: null
Funciton: Two component, sigma54 specific, transcriptional regulator, Fis family
membrane protein, putative
hypothetical protein
PAS/PAC sensor signal transduction histidine kinase
Two component, sigma54 specific, transcriptional regulator, Fis family

Position: -73
Score: 4.9
Sequence: CATTGCACGCTTCTTGCTC
Locus tag: DVU2133
Name: null
Funciton: membrane protein, putative
Locus tag: DVU2132
Name: null
Funciton: hypothetical protein
membrane protein, putative
hypothetical protein

Position: -60
Score: 4.4
Sequence: CGTGGAACGGAACGTGCTT
Locus tag: DVU2105
Name: null
Funciton: Major ampullate spidroin
Locus tag: DVU2104
Name: null
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: DVU2103
Name: null
Funciton: Iron-sulfur cluster binding protein
Major ampullate spidroin
4Fe-4S ferredoxin iron-sulfur binding domain protein
Iron-sulfur cluster binding protein

Position: -56
Score: 5.1
Sequence: CATGGCATGTGCCTTGCTT
Locus tag: DVU3020
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -430
Score: 5.5
Sequence: CTTGGCACACCCCTTGCTT
Locus tag: DVU2357
Name: null
Funciton: metal dependent phosphohydrolase
metal dependent phosphohydrolase

Position: -257
Score: 4.5
Sequence: TCTGGCCCGCTTTTCGCAA
Locus tag: DVUA0106
Name: null
Funciton: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
Locus tag: DVUA0105
Name: sycN
Funciton: Type III secretion chaperone SycN
Locus tag: DORF831
Name: DORF831
Funciton: hypothetical protein
Locus tag: DVUA0104.1
Name: DVUA0104.1
Funciton: Chaperone protein YscY (Yop proteins translocation protein Y)
Locus tag: DVUA0104
Name: sctV
Funciton: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)
Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
sycN
Type III secretion chaperone SycN
DORF831
hypothetical protein
DVUA0104.1
Chaperone protein YscY (Yop proteins translocation protein Y)
sctV
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

Position: -74
Score: 3.9
Sequence: CAAGGCGTGTTCCTTGCCA
Locus tag: DVU2392
Name: null
Funciton: Type III secretion chaperone, CesT family
Type III secretion chaperone, CesT family

Position: -106
Score: 4.6
Sequence: AGTGGCACGCCTTTCGCTA
Locus tag: DVU4010
Name: DVU4010
Funciton: null
DVU4010
null

Position: -29
Score: 4.8
Sequence: CGTGGCCCGTATTTTGCTC
Locus tag: DVU3234
Name: fliR
Funciton: Flagellar biosynthesis protein FliR
Locus tag: DVU3233
Name: flhB
Funciton: Flagellar biosynthesis protein FlhB
fliR
Flagellar biosynthesis protein FliR
flhB
Flagellar biosynthesis protein FlhB

Position: -68
Score: 4.1
Sequence: CGTGGTCTGCATATTGCAA
Locus tag: DVU0512
Name: flgF
Funciton: Flagellar basal-body rod protein FlgF
Locus tag: DVU0513
Name: flgG
Funciton: Flagellar basal-body rod protein FlgG
Locus tag: DVU0514
Name: flgA
Funciton: Flagellar basal-body P-ring formation protein FlgA
Locus tag: DVU0515
Name: flgH
Funciton: Flagellar L-ring protein FlgH
Locus tag: DVU0516
Name: flgI
Funciton: Flagellar P-ring protein FlgI
Locus tag: DVU0517
Name: flgJ
Funciton: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
Locus tag: DVU0518
Name: DVU0518
Funciton: FlgN family protein
Locus tag: DVU0519
Name: flgK
Funciton: flagellar hook-associated protein FlgK
Locus tag: DVU0520
Name: flgL
Funciton: Flagellar hook-associated protein FlgL
Locus tag: DVU0521
Name: csrA
Funciton: carbon storage regulator, CsrA
Locus tag: DVU0522
Name: fliW
Funciton: Flagellar assembly factor FliW
flgF
Flagellar basal-body rod protein FlgF
flgG
Flagellar basal-body rod protein FlgG
flgA
Flagellar basal-body P-ring formation protein FlgA
flgH
Flagellar L-ring protein FlgH
flgI
Flagellar P-ring protein FlgI
flgJ
Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
DVU0518
FlgN family protein
flgK
flagellar hook-associated protein FlgK
flgL
Flagellar hook-associated protein FlgL
csrA
carbon storage regulator, CsrA
fliW
Flagellar assembly factor FliW

Position: -128
Score: 4.5
Sequence: ACTGGCCCCTATCTTGCAA
Locus tag: DVU0910
Name: fliM
Funciton: Flagellar motor switch protein FliM
fliM
Flagellar motor switch protein FliM

Position: -54
Score: 4.9
Sequence: ATTGGCATCGTGTTTGCTG
Locus tag: DVU1441
Name: flaB1
Funciton: Flagellin (flaB1)
flaB1
Flagellin (flaB1)

Position: -13
Score: 5
Sequence: CATTGCACGGTTCTTGCTT
Locus tag: DVU2896
Name: null
Funciton: TPR domain protein
Locus tag: DVU2897
Name: null
Funciton: Candidate gene for the hypothesized phosphomevalonate decarboxylase; COG1355, Predicted dioxygenase
TPR domain protein
Candidate gene for the hypothesized phosphomevalonate decarboxylase; COG1355, Predicted dioxygenase

Position: -51
Score: 4.4
Sequence: CACGGCATCATTCCTGCTT
Locus tag: DVU2107
Name: DVU2107
Funciton: hypothetical protein
Locus tag: DVU2108
Name: DVU2108
Funciton: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Locus tag: DVU2109
Name: mrp
Funciton: Cytosolic Fe-S cluster assembling factor NBP35
DVU2107
hypothetical protein
DVU2108
Dinitrogenase iron-molybdenum cofactor biosynthesis protein
mrp
Cytosolic Fe-S cluster assembling factor NBP35

Position: -91
Score: 4.9
Sequence: CGTGGAACCCTTTTTGCTT
Locus tag: DVU0316
Name: flgB
Funciton: Flagellar basal-body rod protein FlgB
Locus tag: DVU0315
Name: flgC
Funciton: Flagellar basal-body rod protein FlgC
Locus tag: DVU0314
Name: fliE
Funciton: Flagellar hook-basal body complex protein FliE
Locus tag: DVU0313
Name: fliF
Funciton: Flagellar M-ring protein FliF
Locus tag: DVU0312
Name: fliG
Funciton: Flagellar motor switch protein FliG
Locus tag: DVU0311
Name: fliH
Funciton: Flagellar assembly protein FliH
Locus tag: DVU0310
Name: fliI
Funciton: flagellar protein export ATPase FliI
flgB
Flagellar basal-body rod protein FlgB
flgC
Flagellar basal-body rod protein FlgC
fliE
Flagellar hook-basal body complex protein FliE
fliF
Flagellar M-ring protein FliF
fliG
Flagellar motor switch protein FliG
fliH
Flagellar assembly protein FliH
fliI
flagellar protein export ATPase FliI

Position: -52
Score: 4.8
Sequence: GGTGGCGTGCTTCTTGCTC
Locus tag: DVU1032
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -79
Score: 5
Sequence: TCCGGCATCGTTCTTGCTT
Locus tag: DVU0858
Name: null
Funciton: lipoprotein, putative
lipoprotein, putative

Position: -71
Score: 4.2
Sequence: CGTGGCATCTGGATTGCAT
Locus tag: DVU0863
Name: fliD
Funciton: Flagellar hook-associated protein FliD
Locus tag: DVU0862
Name: fliS
Funciton: Flagellin-specific chaperone FliS
fliD
Flagellar hook-associated protein FliD
fliS
Flagellin-specific chaperone FliS

Position: -96
Score: 4.3
Sequence: CAAGGTACACACCTTGCTT
Locus tag: DVU2090
Name: null
Funciton: EF hand domain protein
EF hand domain protein
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