Regulog BirA - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By trascription factor - BirA
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 9 | 2 |
| Desulfovibrio vulgaris str. Miyazaki F | 10 | 2 |
| Desulfovibrio desulfuricans G20 | 10 | 2 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio magneticus RS-1 | ||
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | ||
| Desulfohalobium retbaense DSM 5692 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| bioB |
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Desulfovibrio vulgaris Hildenborough Site: position = -230 score = 8.48477 sequence = TTGTAAACC-(15)-CGTTGACAG Gene: DVU2558: Biotin synthase (EC 2.8.1.6) |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -91 score = 9.13405 sequence = TTGTAAACC-(15)-GGTTGACAA Gene: DvMF_1001: Biotin synthase (EC 2.8.1.6) |
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Desulfovibrio desulfuricans G20 Site: position = -120 score = 8.70579 sequence = TTGTAAACC-(15)-AGTTGACAA Gene: Dde_2655: Biotin synthase (EC 2.8.1.6) |
Gene: Ddes_1301: Biotin synthase (EC 2.8.1.6) |
Gene: DESPIG_00325: Biotin synthase (EC 2.8.1.6) |
Gene: Desal_2977: Biotin synthase (EC 2.8.1.6) |
Gene: DMR_33650: Biotin synthase (EC 2.8.1.6) |
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Gene: Dbac_1124: Biotin synthase (EC 2.8.1.6) |
Gene: Dret_1048: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioA |
Gene: DVU2559: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: DvMF_1002: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Dde_2656: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Ddes_1300: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: DESPIG_00326: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Desal_2978: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: Dbac_2718: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: Dret_1046: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| DVU2560 |
Gene: DVU2560: conserved domain protein |
Gene: DvMF_1003: conserved domain protein |
Gene: Dde_2657: conserved domain protein |
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Gene: Dbac_1123: conserved domain protein |
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conserved domain protein |
| fabG |
Gene: DVU2561: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: DvMF_1004: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Dde_2658: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
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Gene: DESPIG_02525: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
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Gene: Dbac_1122: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
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3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
| acpP |
Gene: DVU2562: acyl carrier protein, putative |
Gene: DvMF_1005: acyl carrier protein, putative |
Gene: Dde_2659: acyl carrier protein, putative |
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Gene: DESPIG_02526: acyl carrier protein, putative |
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Gene: Dbac_1121: acyl carrier protein, putative |
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acyl carrier protein, putative |
| fabF |
Gene: DVU2563: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: DvMF_1006: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Dde_2660: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
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Gene: DESPIG_02527: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
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Gene: Dbac_1120: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
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3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
| Dde_2651 |
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Gene: DvMF_1007: hypothetical thioesterase domain protein |
Gene: Dde_2661: hypothetical thioesterase domain protein |
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Gene: DESPIG_02528: hypothetical thioesterase domain protein |
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hypothetical thioesterase domain protein |
| bioF |
Gene: DVU2564: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: DvMF_1008: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Dde_2662: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: DESPIG_02529: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: Dbac_1118: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioD |
Gene: DVU2565: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: DvMF_1009: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Dde_2663: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: Desal_2979: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: Dbac_1117: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Dret_1047: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
| CRON 2. | |||||||||||
| birA |
*
Desulfovibrio vulgaris Hildenborough Site: position = -38 score = 8.48477 sequence = CTGTCAACG-(15)-GGTTTACAA Gene: DVU2557: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -38 score = 9.13405 sequence = TTGTCAACC-(15)-GGTTTACAA Gene: DvMF_1000: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
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Desulfovibrio desulfuricans G20 Site: position = -21 score = 8.70579 sequence = TTGTCAACT-(15)-GGTTTACAA Gene: Dde_2654: Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
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Biotin-protein ligase (EC 6.3.4.15) / Biotin operon repressor |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |