Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Desulfovibrio desulfuricans G20

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArsR Arsenate Arsenic resistance 5 4
TF ArsR2 Arsenic resistance 3 1
TF BirA Biotin Biotin biosynthesis 2 2
TF CooA Carbon monoxide utilization 1 1
TF DVU0030 Amino acid transport 2 4
TF DVU0309 2 4
TF DVU0379 Uranium reduction 1 1
TF DVU0539/DVU0946 1 1
TF DVU0569 Amino acid metabolism 1 3
TF DVU0621 Nitrite Nitrate and nitrite respiration 1 3
TF DVU0744 1 4
TF DVU0804 1 1
TF DVU1063 Motility 10 14
TF DVU1419 1 1
TF DVU1964/DVU1967 3 3
TF DVU2106 Nitrogen fixation 1 2
TF DVU2114 3 4
TF DVU2359 1 3
TF DVU2394 Energy metabolism 3 2
TF DVU2644 Amino acid metabolism 2 2
TF DVU2802 1 1
TF DVU2827 Pyruvate metabolism 3 3
TF DVU2894 Motility 8 5
TF DVU2934 1 3
TF DVU3023 Lactate Lactate utilization 1 4
TF DVUA0057 Biofilm formation 5 7
TF Dde_1200 1 1
TF FliA Motility 14 10
TF Fur Iron ion, (Fe2+) Iron homeostasis 27 41
TF GalR Galactose Galactose utilization 2 2
TF GlpR Glycerol 3-phosphate Glycerol utilization 1 2
TF HcpR Nitric oxide Nitrosative stress response 5 4
TF HmcR Energy metabolism 2 2
TF HrcA Heat shock Heat shock response 3 1
TF HrsM 3 2
TF LexA DNA damage SOS response 4 4
TF LldR L-lactate Lactate utilization 4 1
TF LysX Lysine biosynthesis 5 5
TF ModE2 Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 11 7
TF NifA-1 Nitrogen assimilation 9 17
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 3 4
TF OhcR Energy metabolism 1 2
TF PerR Peroxide stress response 6 4
TF PhnF Phosphonate utilization 3 2
TF PhoB Inorganic phosphate Phosphate metabolism 13 12
TF PspF PspA regulatory protein Phage shock response 1 3
TF Rex NADH Energy metabolism 18 20
TF RpoH Heat shock Heat shock response 6 4
TF RpoN Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism 79 69
TF SahR S-adenosylhomocysteine Methionine metabolism 5 6
TF SmtB Heavy metal resistance 1 2
TF TmcR Energy metabolism 1 3
TF TunR Molybdate; Tungsten Tungsten homeostasis; Molybdenum homeostasis 8 3
TF ZraR Zinc ion, (Zn2+) Zinc homeostasis 4 9
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 8 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA SAM S-adenosylmethionine Methionine biosynthesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 2
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