Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RpoN in Desulfovibrio desulfuricans G20

Properties
Regulator type: Transcription factor
TF locus tag: Dde_1771
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Regulog: RpoN - Desulfovibrionales
Statistics of regulated genes:
- Genes 178
- Operons 66
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 487 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -64
Score: 3.9
Sequence: ACTGGCATGAAATTGGCAA
Locus tag: Dde_0818
Name: null
Funciton: type IV pilus assembly PilZ
Dde_0818
type IV pilus assembly PilZ
Position: -94
Score: 4.8
Sequence: TGTGGCACGGTTTTGGCTA
Locus tag: Dde_0828
Name: null
Funciton: PEP-CTERM system TPR-repeat lipoprotein
Locus tag: Dde_0829
Name: pss
Funciton: Exopolysaccharide production protein Pss (pss)
Locus tag: Dde_0830
Name: null
Funciton: polysaccharide export protein, PEP-CTERM sytem-associated
Locus tag: Dde_0831
Name: null
Funciton: Lipopolysaccharide biosynthesis chain length determinant protein
Locus tag: Dde_0832
Name: null
Funciton: Protein-tyrosine kinase (EC 2.7.1.112)
Locus tag: Dde_0833
Name: exeA
Funciton: Secretion ATPase, PEP-CTERM locus subfamily
Dde_0828
PEP-CTERM system TPR-repeat lipoprotein
Dde_0829
pss
Exopolysaccharide production protein Pss (pss)
Dde_0830
polysaccharide export protein, PEP-CTERM sytem-associated
Dde_0831
Lipopolysaccharide biosynthesis chain length determinant protein
Dde_0832
Protein-tyrosine kinase (EC 2.7.1.112)
Dde_0833
exeA
Secretion ATPase, PEP-CTERM locus subfamily
Position: -54
Score: 4.5
Sequence: CAAGGCACGCTTTTTGCGA
Locus tag: Dde_1278
Name: null
Funciton: amidohydrolase family protein
Dde_1278
amidohydrolase family protein
Position: -187
Score: 4.4
Sequence: ATTGGAACACGCCTTGCCG
Position: -84
Score: 4.7
Sequence: TTTGGCACATTACCTGCTC
Locus tag: Dde_1275
Name: dtcP
Funciton: TRAP-type C4-dicarboxylate transport system, periplasmic component
Locus tag: Dde_1274
Name: dctM
Funciton: TRAP dicarboxylate transporter, DctM subunit
Locus tag: Dde_1273
Name: null
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: Dde_1272
Name: null
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Dde_1275
dtcP
TRAP-type C4-dicarboxylate transport system, periplasmic component
Dde_1274
dctM
TRAP dicarboxylate transporter, DctM subunit
Dde_1273
Pyruvate formate-lyase (EC 2.3.1.54)
Dde_1272
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -187
Score: 5.2
Sequence: GTTGGCACGTTCCTTGCCT
Locus tag: Dde_0323
Name: null
Funciton: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Locus tag: Dde_0324
Name: null
Funciton: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Locus tag: Dde_0325
Name: null
Funciton: CBS domain containing protein
Locus tag: Dde_0326
Name: null
Funciton: Di- and tricarboxylate transporters
Locus tag: Dde_0327
Name: null
Funciton: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Locus tag: Dde_0328
Name: null
Funciton: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Dde_0323
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Dde_0324
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Dde_0325
CBS domain containing protein
Dde_0326
Di- and tricarboxylate transporters
Dde_0327
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Dde_0328
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Position: 18
Score: 4.5
Sequence: AAAGGCACGGCTTCTGCTG
Locus tag: Dde_0318
Name: null
Funciton: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Locus tag: Dde_0319
Name: null
Funciton: hypothetical protein
Locus tag: Dde_0320
Name: null
Funciton: integral membrane sensor signal transduction histidine kinase
Locus tag: Dde_0321
Name: null
Funciton: response regulator receiver protein
Dde_0318
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Dde_0319
hypothetical protein
Dde_0320
integral membrane sensor signal transduction histidine kinase
Dde_0321
response regulator receiver protein
Position: -98
Score: 5.1
Sequence: TTTGGCCCGTTCCTTGCCT
Locus tag: Dde_3523
Name: adh
Funciton: alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
Locus tag: Dde_3524
Name: hdrC
Funciton: CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)
Locus tag: Dde_3525
Name: hdrB
Funciton: CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)
Locus tag: Dde_3526
Name: hdrA
Funciton: CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)
Locus tag: Dde_3527
Name: hdrD
Funciton: CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1)
Locus tag: Dde_3528
Name: null
Funciton: Coenzyme F420-reducing hydrogenase, beta subunit
Locus tag: Dde_3529
Name: null
Funciton: heterodisulfide reductase, iron-sulfur binding subunit, putative
Locus tag: Dde_3530
Name: null
Funciton: Heterodisulfide reductase, cytochrome reductase subunit
Dde_3523
adh
alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
Dde_3524
hdrC
CoB--CoM heterodisulfide reductase subunit C (EC 1.8.98.1)
Dde_3525
hdrB
CoB--CoM heterodisulfide reductase subunit B (EC 1.8.98.1)
Dde_3526
hdrA
CoB--CoM heterodisulfide reductase subunit A (EC 1.8.98.1)
Dde_3527
hdrD
CoB--CoM heterodisulfide reductase subunit D (EC 1.8.98.1)
Dde_3528
Coenzyme F420-reducing hydrogenase, beta subunit
Dde_3529
heterodisulfide reductase, iron-sulfur binding subunit, putative
Dde_3530
Heterodisulfide reductase, cytochrome reductase subunit
Position: -159
Score: 4.9
Sequence: ACTGGCACGGCATATGCTT
Locus tag: Dde_1258
Name: frdC
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Dde_1257
Name: frdA
Funciton: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Dde_1256
Name: frdB
Funciton: Fumarate reductase iron-sulfur subunit
Locus tag: Dde_1255
Name: fumA
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2) ## subunit A
Locus tag: Dde_1254
Name: ttdB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2) ## subunit B
Locus tag: Dde_1253
Name: sfcA
Funciton: Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+))
Dde_1258
frdC
Fumarate reductase cytochrome b subunit
Dde_1257
frdA
Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Dde_1256
frdB
Fumarate reductase iron-sulfur subunit
Dde_1255
fumA
Fumarate hydratase class I, aerobic (EC 4.2.1.2) ## subunit A
Dde_1254
ttdB
Fumarate hydratase class I, aerobic (EC 4.2.1.2) ## subunit B
Dde_1253
sfcA
Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+))
Position: -74
Score: 4.3
Sequence: GCTGGCCTGTATGTTGCCA
Locus tag: Dde_3225
Name: pspB
Funciton: phage shock protein B
Locus tag: Dde_3224
Name: pspC
Funciton: Phage shock protein C
Dde_3225
pspB
phage shock protein B
Dde_3224
pspC
Phage shock protein C
Position: -49
Score: 4.4
Sequence: TCTGGCATAGAAGGTGCTT
Locus tag: Dde_3226
Name: pspA
Funciton: Phage shock protein A
Dde_3226
pspA
Phage shock protein A
Position: -79
Score: 5.1
Sequence: TCTGGCATCCATTTTGCTA
Locus tag: Dde_1940
Name: null
Funciton: hypothetical protein
Dde_1940
hypothetical protein
Position: -208
Score: 4.3
Sequence: TCTGGTGCGTTGCTTGCAT
Locus tag: Dde_0110
Name: zraS
Funciton: Sensor protein of sigma-54-dependent two-component system
Locus tag: Dde_0109
Name: zraR
Funciton: Two component, sigma54 specific, transcriptional regulator, Fis family
Dde_0110
zraS
Sensor protein of sigma-54-dependent two-component system
Dde_0109
zraR
Two component, sigma54 specific, transcriptional regulator, Fis family
Position: -83
Score: 4.6
Sequence: ACCGGCACGGTTTGTGCTG
Locus tag: Dde_0657
Name: null
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: Dde_0656
Name: null
Funciton: iron-sulfur cluster-binding protein
Dde_0657
4Fe-4S ferredoxin iron-sulfur binding domain protein
Dde_0656
iron-sulfur cluster-binding protein
Position: -163
Score: 4.8
Sequence: CATGGCATACTTTTTGTTT
Locus tag: Dde_3237
Name: por
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Locus tag: Dde_3238
Name: lldP
Funciton: L-lactate permease
Locus tag: Dde_3239
Name: glcD
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Locus tag: Dde_3240
Name: glcF
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Locus tag: Dde_3241
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: Dde_3242
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
Locus tag: Dde_3243
Name: DVU3031
Funciton: BioD-like N-terminal domain of phosphotransacetylase
Locus tag: Dde_3244
Name: lldG
Funciton: L-lactate dehydrogenase, hypothetical protein subunit LldG
Locus tag: Dde_3245
Name: lldEF
Funciton: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
Dde_3237
por
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Dde_3238
lldP
L-lactate permease
Dde_3239
glcD
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Dde_3240
glcF
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Dde_3241
pta
Phosphate acetyltransferase (EC 2.3.1.8)
Dde_3242
ackA
Acetate kinase (EC 2.7.2.1)
Dde_3243
DVU3031
BioD-like N-terminal domain of phosphotransacetylase
Dde_3244
lldG
L-lactate dehydrogenase, hypothetical protein subunit LldG
Dde_3245
lldEF
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
Position: -71
Score: 4.9
Sequence: TTTGGCCCTCCTTTTGCTC
Locus tag: Dde_3492
Name: amt
Funciton: Ammonium transporter
Locus tag: Dde_3493
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Dde_3492
amt
Ammonium transporter
Dde_3493
glnB
Nitrogen regulatory protein P-II
Position: -54
Score: 4.6
Sequence: TTTGGCACGTGTTTTTCAT
Locus tag: Dde_1684
Name: hydH
Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: Dde_1685
Name: atoC
Funciton: two component, sigma54 specific, transcriptional regulator, Fis family
Dde_1684
hydH
PAS/PAC sensor signal transduction histidine kinase
Dde_1685
atoC
two component, sigma54 specific, transcriptional regulator, Fis family
Position: -44
Score: 4.8
Sequence: TCTGGAACGCCTTTTGTAT
Locus tag: Dde_1713
Name: fliK
Funciton: Flagellar hook-length control protein FliK
Dde_1713
fliK
Flagellar hook-length control protein FliK
Position: -141
Score: 5.2
Sequence: GGTGGCACGGTTCCTGCTT
Locus tag: Dde_0357
Name: null
Funciton: Tetratricopeptide TPR_1 repeat-containing protein
Dde_0357
Tetratricopeptide TPR_1 repeat-containing protein
Position: -227
Score: 5.1
Sequence: GTTGGCACGGCAGTTGCTA
Locus tag: Dde_0191
Name: null
Funciton: protein of unknown function DUF355
Dde_0191
protein of unknown function DUF355
Position: -48
Score: 4.4
Sequence: TTTGGCACCGGTGTTGTAA
Locus tag: Dde_0645
Name: null
Funciton: hypothetical protein
Dde_0645
hypothetical protein
Position: -98
Score: 4.1
Sequence: CACGGCATCATGATTGCAT
Locus tag: Dde_0816
Name: null
Funciton: FOG: GGDEF domain
Dde_0816
FOG: GGDEF domain
Position: -73
Score: 5.1
Sequence: CGTGGCATGCAACTTGCTT
Locus tag: Dde_0438
Name: null
Funciton: UDP-N-acetylglucosamine pyrophosphorylase related protein
Locus tag: Dde_0439
Name: null
Funciton: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)
Dde_0438
UDP-N-acetylglucosamine pyrophosphorylase related protein
Dde_0439
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)
Position: -87
Score: 4
Sequence: TTTGGCCCAGGAAATGCAA
Locus tag: Dde_1712
Name: flgD
Funciton: Flagellar basal-body rod modification protein FlgD
Locus tag: Dde_1711
Name: flgE
Funciton: Flagellar hook protein FlgE
Dde_1712
flgD
Flagellar basal-body rod modification protein FlgD
Dde_1711
flgE
Flagellar hook protein FlgE
Position: -45
Score: 4.4
Sequence: TGTGGCCGGCATTTTGCAC
Locus tag: Dde_0420
Name: null
Funciton: Methyltransferase type 12
Locus tag: Dde_0419
Name: null
Funciton: Uncharacterized conserved protein
Locus tag: Dde_0418
Name: null
Funciton: phosphoribosylglycinamide synthetase
Dde_0420
Methyltransferase type 12
Dde_0419
Uncharacterized conserved protein
Dde_0418
phosphoribosylglycinamide synthetase
Position: -243
Score: 4.9
Sequence: AATGGCACGCTTGATGCTA
Locus tag: Dde_2287
Name: nudF
Funciton: ADP-ribose pyrophosphatase (EC 3.6.1.13)
Locus tag: Dde_2286
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Locus tag: Dde_2285
Name: glgB
Funciton: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Dde_2287
nudF
ADP-ribose pyrophosphatase (EC 3.6.1.13)
Dde_2286
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Dde_2285
glgB
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Position: -164
Score: 4.1
Sequence: GCTGGCAGGAAAATTGCTG
Locus tag: Dde_3153
Name: DVU0518
Funciton: FlgN family protein
Locus tag: Dde_3152
Name: flgK
Funciton: flagellar hook-associated protein FlgK
Locus tag: Dde_3151
Name: flgL
Funciton: Flagellar hook-associated protein FlgL
Locus tag: Dde_3150
Name: csrA
Funciton: carbon storage regulator, CsrA
Locus tag: Dde_3149
Name: fliW
Funciton: Flagellar assembly factor FliW
Dde_3153
DVU0518
FlgN family protein
Dde_3152
flgK
flagellar hook-associated protein FlgK
Dde_3151
flgL
Flagellar hook-associated protein FlgL
Dde_3150
csrA
carbon storage regulator, CsrA
Dde_3149
fliW
Flagellar assembly factor FliW
Position: -145
Score: 4.8
Sequence: GCTGGCACGGGCCTTGTAT
Locus tag: Dde_0380
Name: flhA
Funciton: Flagellar biosynthesis pathway, component FlhA
Locus tag: Dde_0381
Name: flhF
Funciton: Flagellar biosynthesis protein FlhF
Locus tag: Dde_0382
Name: fleN
Funciton: Flagellar synthesis regulator FleN
Locus tag: Dde_0383
Name: fliA
Funciton: RNA polymerase, sigma 28 subunit, FliA/WhiG
Locus tag: Dde_0384
Name: cheY
Funciton: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
Locus tag: Dde_0385
Name: fliL
Funciton: Flagellar biosynthesis protein FliL
Locus tag: Dde_0386
Name: null
Funciton: hypothetical protein
Locus tag: Dde_0387
Name: null
Funciton: hypothetical protein
Dde_0380
flhA
Flagellar biosynthesis pathway, component FlhA
Dde_0381
flhF
Flagellar biosynthesis protein FlhF
Dde_0382
fleN
Flagellar synthesis regulator FleN
Dde_0383
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG
Dde_0384
cheY
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
Dde_0385
fliL
Flagellar biosynthesis protein FliL
Dde_0386
hypothetical protein
Dde_0387
hypothetical protein
Position: -71
Score: 4
Sequence: ACAGGCACACCCCGTGCAC
Locus tag: Dde_0696
Name: cckA
Funciton: Signal transduction histidine kinase
Locus tag: Dde_0695
Name: null
Funciton: Putative two-component system response regulator
Dde_0696
cckA
Signal transduction histidine kinase
Dde_0695
Putative two-component system response regulator
Position: -57
Score: 4.2
Sequence: ATCGGCACTATGGTTGCTA
Locus tag: Dde_0108
Name: null
Funciton: hypothetical protein
Dde_0108
hypothetical protein
Position: -96
Score: 4.7
Sequence: GTTGGCACCGACTCTGCAA
Locus tag: Dde_0102
Name: glnN
Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Dde_0102
glnN
Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Position: -41
Score: 4.8
Sequence: AACGGCACGATTATTGCTT
Locus tag: Dde_2986
Name: lpxC
Funciton: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
Dde_2986
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
Position: -136
Score: 5.2
Sequence: TCTGGCACGATTTATGCTT
Locus tag: Dde_1501
Name: flaB3
Funciton: Flagellin protein FlaA
Locus tag: Dde_1502
Name: flaB3
Funciton: Flagellin protein FlaA
Dde_1501
flaB3
Flagellin protein FlaA
Dde_1502
flaB3
Flagellin protein FlaA
Position: -88
Score: 4.9
Sequence: GCTGGCACGCACGTTGCAC
Locus tag: Dde_3211
Name: null
Funciton: Split-Soret cytochrome c
Dde_3211
Split-Soret cytochrome c
Position: -59
Score: 5.2
Sequence: TTTGGCACACCTGTTGCTG
Locus tag: Dde_2819
Name: zraP
Funciton: Zinc resistance-associated protein
Dde_2819
zraP
Zinc resistance-associated protein
Position: -83
Score: 4.5
Sequence: ACCGGCACGGATACTGCAT
Locus tag: Dde_0564
Name: null
Funciton: hypothetical protein
Locus tag: Dde_0563
Name: null
Funciton: hypothetical protein
Dde_0564
hypothetical protein
Dde_0563
hypothetical protein
Position: -308
Score: 4.5
Sequence: TACGGCACGGCCGCTGCTC
Locus tag: Dde_0288
Name: null
Funciton: hypothetical protein
Dde_0288
hypothetical protein
Position: -55
Score: 4.7
Sequence: TCCGGCCTGTATTTTGCTT
Locus tag: Dde_1532
Name: null
Funciton: Conserved hypothetical protein
Dde_1532
Conserved hypothetical protein
Position: -112
Score: 5.1
Sequence: TCTGGCCTGATCTTTGCTT
Locus tag: Dde_2705
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: Dde_2706
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: Dde_2707
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
Dde_2705
fliJ
Flagellar biosynthesis chaperone FliJ
Dde_2706
flbB
Flagellar protein FlbB
Dde_2707
truA
tRNA pseudouridine synthase A (EC 4.2.1.70)
Position: -70
Score: 3.7
Sequence: CACGGCGCAAAGGTTGCAT
Locus tag: Dde_1834
Name: null
Funciton: GGDEF domain protein
Dde_1834
GGDEF domain protein
Position: -75
Score: 5.2
Sequence: TCTGGCCTGCTGCTTGCTT
Locus tag: Dde_2311
Name: amt
Funciton: Ammonium transporter
Locus tag: Dde_2310
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: Dde_2309
Name: glnD
Funciton: Probable [Protein-PII] uridylyltransferase
Dde_2311
amt
Ammonium transporter
Dde_2310
glnB
Nitrogen regulatory protein P-II
Dde_2309
glnD
Probable [Protein-PII] uridylyltransferase
Position: -58
Score: 4.6
Sequence: TTTGGTACGCCTTTTGTAG
Locus tag: Dde_1017
Name: null
Funciton: hypothetical protein
Locus tag: Dde_1018
Name: null
Funciton: response regulator receiver protein
Dde_1017
hypothetical protein
Dde_1018
response regulator receiver protein
Position: -73
Score: 4.6
Sequence: ACAGGCACGGCGATTGCTT
Locus tag: Dde_2507
Name: null
Funciton: protein of unknown function DUF1555
Dde_2507
protein of unknown function DUF1555
Position: -76
Score: 5.1
Sequence: CATGGAACGCTGTTTGCTT
Locus tag: Dde_2509
Name: null
Funciton: protein of unknown function DUF1555
Dde_2509
protein of unknown function DUF1555
Position: -72
Score: 4.9
Sequence: TTTGGAACCGCTATTGCTT
Locus tag: Dde_2510
Name: null
Funciton: protein of unknown function DUF1555
Dde_2510
protein of unknown function DUF1555
Position: -52
Score: 4.5
Sequence: AGTGGCACCACCTTTGCCA
Locus tag: Dde_0404
Name: null
Funciton: hypothetical protein
Dde_0404
hypothetical protein
Position: 8
Score: 4.3
Sequence: AATGGCATTGCCGCTGCTT
Locus tag: Dde_1786
Name: mltC
Funciton: Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)
Locus tag: Dde_1787
Name: null
Funciton: outer membrane chaperone Skp (OmpH)
Dde_1786
mltC
Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)
Dde_1787
outer membrane chaperone Skp (OmpH)
Position: -101
Score: 4.8
Sequence: CATTGCACGCCTTTTGCAT
Locus tag: Dde_2960
Name: null
Funciton: Tetratricopeptide domain protein
Locus tag: Dde_2961
Name: null
Funciton: protein of unknown function DUF52
Dde_2960
Tetratricopeptide domain protein
Dde_2961
protein of unknown function DUF52
Position: -87
Score: 4.8
Sequence: GGTGGCATGCTTTATGCTC
Locus tag: Dde_1654
Name: null
Funciton: hypothetical protein
Dde_1654
hypothetical protein
Position: -82
Score: 5.1
Sequence: CTTGGCACGGTGGTTGCCT
Locus tag: Dde_2357
Name: null
Funciton: Flp/Fap pilin component family protein
Locus tag: Dde_2358
Name: cpaA
Funciton: Type IV prepilin peptidase TadV/CpaA
Locus tag: Dde_2359
Name: cpaB
Funciton: Flp pilus assembly protein CpaB
Locus tag: Dde_2360
Name: cpaC
Funciton: Pilus assembly protein CpaC (cpaC)
Locus tag: Dde_2361
Name: null
Funciton: hypothetical protein
Locus tag: Dde_2362
Name: null
Funciton: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly
Locus tag: Dde_2363
Name: cpaF
Funciton: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
Locus tag: Dde_2364
Name: null
Funciton: Flp pilus assembly protein TadB
Locus tag: Dde_2365
Name: null
Funciton: Type II/IV secretion system protein TadC, associated with Flp pilus assembly
Locus tag: Dde_2366
Name: null
Funciton: Flp pilus assembly protein TadD, contains TPR repeat
Locus tag: Dde_2367
Name: null
Funciton: hypothetical protein
Locus tag: Dde_2368
Name: null
Funciton: Von Willebrand factor type A domain protein, associated with Flp pilus assembly
Locus tag: Dde_2369
Name: null
Funciton: Similar to TadZ/CpaE, associated with Flp pilus assembly
Locus tag: Dde_2370
Name: null
Funciton: PAS/PAC sensor hybrid histidine kinase
Dde_2357
Flp/Fap pilin component family protein
Dde_2358
cpaA
Type IV prepilin peptidase TadV/CpaA
Dde_2359
cpaB
Flp pilus assembly protein CpaB
Dde_2360
cpaC
Pilus assembly protein CpaC (cpaC)
Dde_2361
hypothetical protein
Dde_2362
Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly
Dde_2363
cpaF
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
Dde_2364
Flp pilus assembly protein TadB
Dde_2365
Type II/IV secretion system protein TadC, associated with Flp pilus assembly
Dde_2366
Flp pilus assembly protein TadD, contains TPR repeat
Dde_2367
hypothetical protein
Dde_2368
Von Willebrand factor type A domain protein, associated with Flp pilus assembly
Dde_2369
Similar to TadZ/CpaE, associated with Flp pilus assembly
Dde_2370
PAS/PAC sensor hybrid histidine kinase
Position: -78
Score: 5.3
Sequence: TATGGCACGCCTGTTGCTC
Locus tag: Dde_0111
Name: zraP
Funciton: Zinc resistance-associated protein
Dde_0111
zraP
Zinc resistance-associated protein
Position: -84
Score: 5.1
Sequence: TCTGGCAAGGTGTTTGCTT
Locus tag: Dde_1553
Name: ald
Funciton: Alanine dehydrogenase (EC 1.4.1.1)
Dde_1553
ald
Alanine dehydrogenase (EC 1.4.1.1)
Position: -116
Score: 5.2
Sequence: TCTGGCACGCTTCTTGTTA
Locus tag: Dde_0876
Name: null
Funciton: membrane protein, putative
Locus tag: Dde_0877
Name: null
Funciton: hypothetical protein
Locus tag: Dde_0878
Name: null
Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: Dde_0879
Name: null
Funciton: Two component, sigma54 specific, transcriptional regulator, Fis family
Dde_0876
membrane protein, putative
Dde_0877
hypothetical protein
Dde_0878
PAS/PAC sensor signal transduction histidine kinase
Dde_0879
Two component, sigma54 specific, transcriptional regulator, Fis family
Position: -212
Score: 5.1
Sequence: CTTGGCATGCATTGTGCTT
Locus tag: Dde_1400
Name: null
Funciton: metal dependent phosphohydrolase
Dde_1400
metal dependent phosphohydrolase
Position: -54
Score: 4.7
Sequence: GTTGGCAGACTTATTGCTA
Locus tag: Dde_1455
Name: null
Funciton: hypothetical protein
Dde_1455
hypothetical protein
Position: -30
Score: 4.6
Sequence: GATGGTCTGTTTTTTGCTT
Locus tag: Dde_0378
Name: fliR
Funciton: Flagellar biosynthesis protein FliR
Locus tag: Dde_0379
Name: flhB
Funciton: Flagellar biosynthesis protein FlhB
Dde_0378
fliR
Flagellar biosynthesis protein FliR
Dde_0379
flhB
Flagellar biosynthesis protein FlhB
Position: -85
Score: 4
Sequence: CGTGGCGCGCTGCTTGACT
Locus tag: Dde_3591
Name: era
Funciton: GTP-binding protein Era
Locus tag: Dde_3590
Name: null
Funciton: alanine racemase domain protein
Locus tag: Dde_3589
Name: motA
Funciton: Flagellar motor rotation protein MotA
Locus tag: Dde_3588
Name: motB
Funciton: Flagellar motor rotation protein MotB
Locus tag: Dde_3587
Name: motB-2
Funciton: Flagellar motor rotation protein MotB
Locus tag: Dde_3586
Name: fliL
Funciton: Flagellar basal body-associated protein FliL
Locus tag: Dde_3585
Name: fliN
Funciton: Flagellar motor switch protein FliN
Locus tag: Dde_3584
Name: fliO
Funciton: Flagellar biosynthesis protein FliO
Locus tag: Dde_3583
Name: fliP
Funciton: Flagellar biosynthesis protein FliP
Locus tag: Dde_3582
Name: fliQ
Funciton: Flagellar biosynthesis protein FliQ
Dde_3591
era
GTP-binding protein Era
Dde_3590
alanine racemase domain protein
Dde_3589
motA
Flagellar motor rotation protein MotA
Dde_3588
motB
Flagellar motor rotation protein MotB
Dde_3587
motB-2
Flagellar motor rotation protein MotB
Dde_3586
fliL
Flagellar basal body-associated protein FliL
Dde_3585
fliN
Flagellar motor switch protein FliN
Dde_3584
fliO
Flagellar biosynthesis protein FliO
Dde_3583
fliP
Flagellar biosynthesis protein FliP
Dde_3582
fliQ
Flagellar biosynthesis protein FliQ
Position: -66
Score: 4.9
Sequence: GCTGGCCCGCATGTTGCAT
Locus tag: Dde_3159
Name: flgF
Funciton: Flagellar basal-body rod protein FlgF
Locus tag: Dde_3158
Name: flgG
Funciton: Flagellar basal-body rod protein FlgG
Locus tag: Dde_3157
Name: flgA
Funciton: Flagellar basal-body P-ring formation protein FlgA
Locus tag: Dde_3156
Name: flgH
Funciton: Flagellar L-ring protein FlgH
Locus tag: Dde_3155
Name: flgI
Funciton: Flagellar P-ring protein FlgI
Locus tag: Dde_3154
Name: flgJ
Funciton: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
Dde_3159
flgF
Flagellar basal-body rod protein FlgF
Dde_3158
flgG
Flagellar basal-body rod protein FlgG
Dde_3157
flgA
Flagellar basal-body P-ring formation protein FlgA
Dde_3156
flgH
Flagellar L-ring protein FlgH
Dde_3155
flgI
Flagellar P-ring protein FlgI
Dde_3154
flgJ
Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
Position: -136
Score: 4.1
Sequence: AATGGCATTTATTATGCAT
Locus tag: Dde_2708
Name: fliM
Funciton: Flagellar motor switch protein FliM
Dde_2708
fliM
Flagellar motor switch protein FliM
Position: -49
Score: 4.2
Sequence: GTCGGCATCATTCCTGCCT
Locus tag: Dde_3197
Name: null
Funciton: hypothetical protein
Locus tag: Dde_3198
Name: DVU2108
Funciton: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Locus tag: Dde_3199
Name: null
Funciton: hypothetical protein
Locus tag: Dde_3200
Name: null
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: Dde_3201
Name: null
Funciton: Iron-sulfur cluster binding protein
Locus tag: Dde_3202
Name: mrp
Funciton: Cytosolic Fe-S cluster assembling factor NBP35
Dde_3197
hypothetical protein
Dde_3198
DVU2108
Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Dde_3199
hypothetical protein
Dde_3200
4Fe-4S ferredoxin iron-sulfur binding domain protein
Dde_3201
Iron-sulfur cluster binding protein
Dde_3202
mrp
Cytosolic Fe-S cluster assembling factor NBP35
Position: -95
Score: 4.4
Sequence: AATGGCAGAACCTTTGCAT
Locus tag: Dde_3230
Name: null
Funciton: hypothetical protein
Dde_3230
hypothetical protein
Position: -53
Score: 5.1
Sequence: TTTGGCACCACCTTTGCTC
Locus tag: Dde_1709
Name: flaB1
Funciton: Flagellin (flaB1)
Dde_1709
flaB1
Flagellin (flaB1)
Position: -75
Score: 4.9
Sequence: CATGGAACACACCTTGCTT
Locus tag: Dde_0356
Name: flgB
Funciton: Flagellar basal-body rod protein FlgB
Locus tag: Dde_0355
Name: flgC
Funciton: Flagellar basal-body rod protein FlgC
Locus tag: Dde_0354
Name: fliE
Funciton: Flagellar hook-basal body complex protein FliE
Locus tag: Dde_0353
Name: fliF
Funciton: Flagellar M-ring protein FliF
Locus tag: Dde_0352
Name: fliG
Funciton: Flagellar motor switch protein FliG
Locus tag: Dde_0351
Name: fliH
Funciton: Flagellar assembly protein FliH
Locus tag: Dde_0350
Name: fliI
Funciton: flagellar protein export ATPase FliI
Dde_0356
flgB
Flagellar basal-body rod protein FlgB
Dde_0355
flgC
Flagellar basal-body rod protein FlgC
Dde_0354
fliE
Flagellar hook-basal body complex protein FliE
Dde_0353
fliF
Flagellar M-ring protein FliF
Dde_0352
fliG
Flagellar motor switch protein FliG
Dde_0351
fliH
Flagellar assembly protein FliH
Dde_0350
fliI
flagellar protein export ATPase FliI
Position: -86
Score: 5.3
Sequence: TCTGGCACGGTCCATGCTT
Locus tag: Dde_0298
Name: flgE
Funciton: Flagellar hook protein FlgE
Dde_0298
flgE
Flagellar hook protein FlgE
Position: -132
Score: 4.2
Sequence: CATGGCCCTTCTTTTGCCG
Position: -65
Score: 4.3
Sequence: CACGGCACTCAATTTGCAT
Locus tag: Dde_2573
Name: null
Funciton: lipoprotein, putative
Dde_2573
lipoprotein, putative
Position: -70
Score: 4.7
Sequence: CATGGCATTTTCCTTGCAT
Locus tag: Dde_1120
Name: fliD
Funciton: Flagellar hook-associated protein FliD
Locus tag: Dde_1119
Name: fliS
Funciton: Flagellin-specific chaperone FliS
Dde_1120
fliD
Flagellar hook-associated protein FliD
Dde_1119
fliS
Flagellin-specific chaperone FliS
Position: -80
Score: 4
Sequence: CCCGGCACGTGGCATGCAA
Position: -73
Score: 5.1
Sequence: CGTGGCATGCAACTTGCTT
Locus tag: Dde_0438
Name: null
Funciton: UDP-N-acetylglucosamine pyrophosphorylase related protein
Locus tag: Dde_0439
Name: null
Funciton: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)
Dde_0438
UDP-N-acetylglucosamine pyrophosphorylase related protein
Dde_0439
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)
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