Regulon of Cobalamin in Desulfovibrio desulfuricans G20
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Desulfovibrionales |
| Under regulation: | |
| - Genes | 8 |
| - Operons | 3 |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -103
Score: 99.2 Sequence: TAACCCGAATCGATT...
Locus tag: Dde_3103
Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: Dde_3104
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Dde_3105
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Dde_3106
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Dde_3107
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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cbiK
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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cbiL
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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Position: -297
Score: 79.2 Sequence: TTGAATATTGATGAA...
Locus tag: Dde_2328
Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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metE
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
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Position: -265
Score: 15.7 Sequence: AACCGGTGTAATTCC...
Locus tag: Dde_3016
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Dde_3015
Name: null Funciton: Hypothetical protein |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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Hypothetical protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |