Regulon of Cobalamin in Desulfovibrio desulfuricans G20

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Regulog:	Cobalamin - Desulfovibrionales
Under regulation:
- Genes	8
- Operons	3

Member of regulog collections

By taxonomy - Desulfovibrionales
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -103 Score: 99.2 Sequence: TAACCCGAATCGATT... Locus tag: Dde_3103 Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) Locus tag: Dde_3104 Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC Locus tag: Dde_3105 Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD Locus tag: Dde_3106 Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF Locus tag: Dde_3107 Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
	Dde_3103	cbiK	Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
	Dde_3104	btuC	Vitamin B12 ABC transporter, permease component BtuC
	Dde_3105	btuD	Vitamin B12 ABC transporter, ATPase component BtuD
	Dde_3106	btuF	Vitamin B12 ABC transporter, B12-binding component BtuF
	Dde_3107	cbiL	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Position: -297 Score: 79.2 Sequence: TTGAATATTGATGAA... Locus tag: Dde_2328 Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
	Dde_2328	metE	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: -265 Score: 15.7 Sequence: AACCGGTGTAATTCC... Locus tag: Dde_3016 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: Dde_3015 Name: null Funciton: Hypothetical protein
	Dde_3016	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	Dde_3015		Hypothetical protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD