Regulog PspF - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Phage shock response |
| Effector: | PspA regulatory protein |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
- By effector - PspA regulatory protein
- By pathway - Phage shock response
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 3 | 1 |
| Desulfovibrio vulgaris str. Miyazaki F | 3 | 1 |
| Desulfovibrio desulfuricans G20 | 3 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio magneticus RS-1 | 2 | 1 |
| Desulfovibrio piger ATCC 29098 | ||
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 3 | 1 |
| Desulfohalobium retbaense DSM 5692 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| pspA |
*
Desulfovibrio vulgaris Hildenborough Site: position = -147 score = 4.84355 sequence = TTTGGTGGATTTTACCAGT Gene: DVU2988: phage shock protein A |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -171 score = 5.32195 sequence = TTTGGTGATTTTCACCAGA Gene: DvMF_1799: phage shock protein A |
*
Desulfovibrio desulfuricans G20 Site: position = -171 score = 5.22802 sequence = CATGGTTTTTTATGCCATA Site: position = -151 score = 4.99877 sequence = TATGGTTTAAATTGCTACT Site: position = -131 score = 5.16775 sequence = AATGGTTTTGTATACCACA Gene: Dde_3226: phage shock protein A |
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*
Desulfovibrio magneticus RS-1 Site: position = -169 score = 5.07387 sequence = CATGGCGATTTTCTCCAGT Site: position = -148 score = 5.05959 sequence = TGTGGCGAAAAATACCAGT Gene: DMR_38330: phage shock protein A |
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*
Desulfomicrobium baculatum DSM 4028 Site: position = -180 score = 4.9226 sequence = TGTGGTTTCCATCACCAAT Gene: Dbac_1225: phage shock protein A |
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phage shock protein A |
| pspB |
Gene: DVU2987: phage shock protein B |
Gene: DvMF_1800: phage shock protein B |
Gene: Dde_3225: phage shock protein B |
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2
Desulfovibrio magneticus RS-1 Gene: DMR_38320: phage shock protein B Gene: DMR_38300: phage shock protein B |
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Gene: Dbac_1224: phage shock protein B |
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phage shock protein B |
| pspC |
Gene: DVU2986: phage shock protein C |
Gene: DvMF_1801: phage shock protein C |
Gene: Dde_3224: phage shock protein C |
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Gene: DMR_38290: phage shock protein C |
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Gene: Dbac_1223: phage shock protein C |
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phage shock protein C |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |