Regulon of Rex in Desulfovibrio salexigens DSM 2638
| Regulator type: | Transcription factor |
| TF locus tag: | Desal_3723 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Desulfovibrionales |
| Statistics of regulated genes: | |
| - Genes | 37 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -74
Score: 4.1 Sequence: CTTGTGAAGGTTTGCGCAAA
Locus tag: Desal_3727
Name: atpI1 Funciton: ATP synthase protein I
Locus tag: Desal_3726
Name: atpI2 Funciton: ATP synthase protein I2
Locus tag: Desal_3725
Name: atpB Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: Desal_3724
Name: atpE Funciton: ATP synthase C chain (EC 3.6.3.14) |
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atpI1
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ATP synthase protein I
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atpI2
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ATP synthase protein I2
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atpB
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ATP synthase A chain (EC 3.6.3.14)
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atpE
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ATP synthase C chain (EC 3.6.3.14)
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Position: -242
Score: 4.6 Sequence: CTTGACATTTCTTTCACAAA
Locus tag: Desal_0228
Name: sat Funciton: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) |
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sat
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Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
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Position: -112
Score: 4.8 Sequence: TTTGTGAAAAGTTTCATATT
Locus tag: Desal_1042
Name: qrcA Funciton: cytochrome c class III family protein
Locus tag: Desal_1043
Name: qrcB Funciton: molybdopterin oxidoreductase, molybdopterin-binding subunit, putative
Locus tag: Desal_1044
Name: qrcC Funciton: molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative
Locus tag: Desal_1045
Name: qrcD Funciton: molybdopterin oxidoreductase, transmembrane subunit, putative |
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qrcA
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cytochrome c class III family protein
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qrcB
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molybdopterin oxidoreductase, molybdopterin-binding subunit, putative
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qrcC
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molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative
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qrcD
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molybdopterin oxidoreductase, transmembrane subunit, putative
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Position: -57
Score: 4.5 Sequence: ATTGTGATAGAAGACACAAG
Locus tag: Desal_2248
Name: ppaC Funciton: Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1) |
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ppaC
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Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)
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Position: -275
Score: 4.7 Sequence: TTTGTGCAAAAATTACCAAA
Position: -144
Score: 4.7 Sequence: TGTGTGAAAATTTTCCCAAT
Locus tag: Desal_2447
Name: null Funciton: cytochrome c class III |
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cytochrome c class III
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Position: -173
Score: 5 Sequence: CTTGGGAATTAAAGCACAAA
Locus tag: Desal_2181
Name: null Funciton: Sulfate transporter family protein |
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Sulfate transporter family protein
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Position: 21
Score: 4.7 Sequence: TTCGTGAAAATGTGCACAGG
Locus tag: Desal_2050
Name: hysB Funciton: periplasmic [NiFeSe] hydrogenase, small subunit
Locus tag: Desal_2049
Name: hysA Funciton: periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing |
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hysB
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periplasmic [NiFeSe] hydrogenase, small subunit
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hysA
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periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing
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Position: -39
Score: 5.1 Sequence: TTTGTGAAATTTGTTACTAA
Locus tag: Desal_1973
Name: adk Funciton: Adenylate kinase (EC 2.7.4.3) |
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adk
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Adenylate kinase (EC 2.7.4.3)
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Position: -146
Score: 4.7 Sequence: CTTGTTCTAAATTTCACTTT
Locus tag: Desal_0229
Name: apsB Funciton: Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)
Locus tag: Desal_0230
Name: apsA Funciton: Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)
Locus tag: Desal_0231
Name: qmoA Funciton: quinone-interacting membrane-bound oxidoreductase complex subunit A
Locus tag: Desal_0232
Name: qmoB Funciton: quinone-interacting membrane-bound oxidoreductase complex subunit B
Locus tag: Desal_0233
Name: qmoC Funciton: quinone-interacting membrane-bound oxidoreductase complex subunit C
Locus tag: Desal_0234
Name: null Funciton: hypothetical protein |
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apsB
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Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)
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apsA
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Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)
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qmoA
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quinone-interacting membrane-bound oxidoreductase complex subunit A
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qmoB
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quinone-interacting membrane-bound oxidoreductase complex subunit B
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qmoC
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quinone-interacting membrane-bound oxidoreductase complex subunit C
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hypothetical protein
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Position: -177
Score: 4.2 Sequence: GTTGTGTTTTTTTTCACTTA
Locus tag: Desal_0787
Name: dsrA Funciton: Sulfite reductase alpha subunit (EC 1.8.99.1)
Locus tag: Desal_0788
Name: dsrB Funciton: Sulfite reductase beta subunit (EC 1.8.99.1)
Locus tag: Desal_0789
Name: dsrD Funciton: Dissimilatory sulfite reductase D |
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dsrA
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Sulfite reductase alpha subunit (EC 1.8.99.1)
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dsrB
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Sulfite reductase beta subunit (EC 1.8.99.1)
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dsrD
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Dissimilatory sulfite reductase D
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Position: -150
Score: 4.5 Sequence: TTAGTTAAAAAAATAACAAG
Position: -36
Score: 4.8 Sequence: TTTGGACAAAAATTCACAAC
Locus tag: Desal_3459
Name: atpF1 Funciton: ATP synthase B' chain (EC 3.6.3.14)
Locus tag: Desal_3458
Name: atpF2 Funciton: ATP synthase F0, B subunit
Locus tag: Desal_3457
Name: atpH Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: Desal_3456
Name: atpA Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: Desal_3455
Name: atpG Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: Desal_3454
Name: atpD Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: Desal_3453
Name: atpC Funciton: ATP synthase epsilon chain (EC 3.6.3.14) |
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atpF1
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ATP synthase B' chain (EC 3.6.3.14)
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atpF2
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ATP synthase F0, B subunit
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atpH
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ATP synthase delta chain (EC 3.6.3.14)
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atpA
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ATP synthase alpha chain (EC 3.6.3.14)
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atpG
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ATP synthase gamma chain (EC 3.6.3.14)
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atpD
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ATP synthase beta chain (EC 3.6.3.14)
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atpC
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ATP synthase epsilon chain (EC 3.6.3.14)
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Position: -118
Score: 3.9 Sequence: AGTGTGACAGAATTCACATT
Locus tag: Desal_0187
Name: null Funciton: hypothetical protein
Locus tag: Desal_0186
Name: dsrM Funciton: Sulfite reduction-associated complex DsrMKJOP protein DsrM (= HmeC)
Locus tag: Desal_0185
Name: dsrK Funciton: Sulfite reduction-associated complex DsrMKJOP protein DsrK (=HmeD)
Locus tag: Desal_0184
Name: dsrJ Funciton: Sulfite reduction-associated complex DsrMKJOP multiheme protein DsrJ (=HmeF)
Locus tag: Desal_0183
Name: dsrO Funciton: Sulfite reduction-associated complex DsrMKJOP iron-sulfur protein DsrO (=HmeA)
Locus tag: Desal_0182
Name: dsrP Funciton: Sulfite reduction-associated complex DsrMKJOP protein DsrP (= HmeB) |
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hypothetical protein
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dsrM
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Sulfite reduction-associated complex DsrMKJOP protein DsrM (= HmeC)
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dsrK
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Sulfite reduction-associated complex DsrMKJOP protein DsrK (=HmeD)
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dsrJ
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Sulfite reduction-associated complex DsrMKJOP multiheme protein DsrJ (=HmeF)
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dsrO
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Sulfite reduction-associated complex DsrMKJOP iron-sulfur protein DsrO (=HmeA)
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dsrP
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Sulfite reduction-associated complex DsrMKJOP protein DsrP (= HmeB)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |