Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Desulfovibrionales

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria/Delta
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfohalobium retbaense DSM 5692 9 2
Desulfomicrobium baculatum DSM 4028 11 2
Desulfovibrio desulfuricans G20 5 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 5 2
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098 2 2
Desulfovibrio salexigens DSM 2638 5 1
Desulfovibrio vulgaris Hildenborough 5 1
Desulfovibrio vulgaris str. Miyazaki F 5 1
Lawsonia intracellularis PHE/MN1-00
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiC
 
Desulfohalobium retbaense DSM 5692
 
Desulfomicrobium baculatum DSM 4028
 
Desulfovibrio desulfuricans G20

Gene: Dde_1680: Phosphomethylpyrimidine synthase
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -165
score = 51.74
sequence = TCCTTCGAGCTAGGG...

Gene: Ddes_0628: Phosphomethylpyrimidine synthase
 
Desulfovibrio magneticus RS-1

Gene: DMR_31310: Phosphomethylpyrimidine synthase
*
Desulfovibrio piger ATCC 29098

Site:
position = -162
score = 61.32
sequence = GCCCGCCAGCTAGGG...

Gene: DESPIG_01371: Phosphomethylpyrimidine synthase
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2338: Phosphomethylpyrimidine synthase
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1411: Phosphomethylpyrimidine synthase
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0207: Phosphomethylpyrimidine synthase
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0937: Phosphomethylpyrimidine synthase
Phosphomethylpyrimidine synthase
 
CRON 2.
 
CRON 3.
thiM
 
Desulfohalobium retbaense DSM 5692
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -153
score = 54.42
sequence = CGAGTTTTTGCAGGG...

Gene: Dbac_0930: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Desulfovibrio desulfuricans G20

Gene: Dde_1378: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0730: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 2
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0773: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

Gene: Dbac_0929: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 2
Desulfovibrio desulfuricans G20

Gene: Dde_1558: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

Gene: Dde_1379: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0209: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02834: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2651: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2091: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0797: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0324: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD
*
Desulfohalobium retbaense DSM 5692

Site:
position = -262
score = 72.73
sequence = TCTTTCGCTAGGGGA...

Gene: Dret_2294: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0928: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
thiZ
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_2295: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0927: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_2296: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0926: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_2297: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0925: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Lawsonia intracellularis PHE/MN1-00
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
thiS
*
Desulfohalobium retbaense DSM 5692

Site:
position = -280
score = 63.68
sequence = CACAATGCTGGGGGA...

Gene: Dret_0726: Sulfur carrier protein ThiS
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -187
score = 68.18
sequence = CCTCACAAGCTGGGG...

Gene: Dbac_0777: Sulfur carrier protein ThiS
*
Desulfovibrio desulfuricans G20

Site:
position = -248
score = 66.67
sequence = GCCAGTGCTGGGGGG...

Site:
position = -409
score = 74.45
sequence = CAAACAGCTAGGGGT...

Gene: Dde_1554: Sulfur carrier protein ThiS
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -239
score = 25.5
sequence = AAACCGGCTGGGGGA...

Site:
position = -155
score = 14.75
sequence = CCTGACGCGGATAGT...

Gene: Ddes_2165: Sulfur carrier protein ThiS
 
Desulfovibrio magneticus RS-1
*
Desulfovibrio piger ATCC 29098

Site:
position = -127
score = 19.61
sequence = GCCGTGCGGCCCTGC...

Site:
position = -179
score = 15.45
sequence = TGGGGGAGCCTGCGG...

Gene: DESPIG_02760: Sulfur carrier protein ThiS
*
Desulfovibrio salexigens DSM 2638

Site:
position = -160
score = 68.08
sequence = TTCGCAGCTGGGGGT...

Gene: Desal_2647: Sulfur carrier protein ThiS
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -423
score = 65.53
sequence = TTCAGTCAGCTAGGG...

Site:
position = -257
score = 55.57
sequence = CGACCGGAGCTAGGG...

Gene: DVU2095: Sulfur carrier protein ThiS
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -181
score = 67.41
sequence = AACGCGAAGCTGGGG...

Site:
position = -381
score = 71.24
sequence = CTCATTCAGCTAGGG...

Gene: DvMF_0801: Sulfur carrier protein ThiS
 
Lawsonia intracellularis PHE/MN1-00
Sulfur carrier protein ThiS
thiG
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0727: Thiazole synthase
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0776: Thiazole synthase
 
Desulfovibrio desulfuricans G20

Gene: Dde_1555: Thiazole synthase
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_2166: Thiazole synthase
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02758: Thiazole synthase
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2648: Thiazole synthase
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2094: Thiazole synthase
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0800: Thiazole synthase
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0504: Thiazole synthase
Thiazole synthase
thiH
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0728: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0775: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Desulfovibrio desulfuricans G20

Gene: Dde_1556: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_2167: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02757: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2649: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2093: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0799: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0505: 2-iminoacetate synthase (EC 1.3.99.n2)
2-iminoacetate synthase (EC 1.3.99.n2)
thiF
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_0729: Sulfur carrier protein adenylyltransferase ThiF
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0774: Sulfur carrier protein adenylyltransferase ThiF
 
Desulfovibrio desulfuricans G20

Gene: Dde_1557: Sulfur carrier protein adenylyltransferase ThiF
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_2168: Sulfur carrier protein adenylyltransferase ThiF
 
Desulfovibrio magneticus RS-1
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_02756: Sulfur carrier protein adenylyltransferase ThiF
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2650: Sulfur carrier protein adenylyltransferase ThiF
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2092: Sulfur carrier protein adenylyltransferase ThiF
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0798: Sulfur carrier protein adenylyltransferase ThiF
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI0506: Sulfur carrier protein adenylyltransferase ThiF
Sulfur carrier protein adenylyltransferase ThiF
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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