Regulog TPP - Desulfovibrionales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Delta |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | 9 | 2 |
| Desulfomicrobium baculatum DSM 4028 | 11 | 2 |
| Desulfovibrio desulfuricans G20 | 5 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 5 | 2 |
| Desulfovibrio magneticus RS-1 | ||
| Desulfovibrio piger ATCC 29098 | 2 | 2 |
| Desulfovibrio salexigens DSM 2638 | 5 | 1 |
| Desulfovibrio vulgaris Hildenborough | 5 | 1 |
| Desulfovibrio vulgaris str. Miyazaki F | 5 | 1 |
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| thiC |
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Gene: Dde_1680: Phosphomethylpyrimidine synthase |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -165 score = 51.74 sequence = TCCTTCGAGCTAGGG... Gene: Ddes_0628: Phosphomethylpyrimidine synthase |
Gene: DMR_31310: Phosphomethylpyrimidine synthase |
*
Desulfovibrio piger ATCC 29098 Site: position = -162 score = 61.32 sequence = GCCCGCCAGCTAGGG... Gene: DESPIG_01371: Phosphomethylpyrimidine synthase |
Gene: Desal_2338: Phosphomethylpyrimidine synthase |
Gene: DVU1411: Phosphomethylpyrimidine synthase |
Gene: DvMF_0207: Phosphomethylpyrimidine synthase |
Gene: LI0937: Phosphomethylpyrimidine synthase |
Phosphomethylpyrimidine synthase |
| CRON 2. | |||||||||||
| CRON 3. | |||||||||||
| thiM |
|
*
Desulfomicrobium baculatum DSM 4028 Site: position = -153 score = 54.42 sequence = CGAGTTTTTGCAGGG... Gene: Dbac_0930: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: Dde_1378: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
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Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiE |
Gene: Dret_0730: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0773: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: Dbac_0929: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Desulfovibrio desulfuricans G20 Gene: Dde_1558: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: Dde_1379: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Ddes_0209: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
Gene: DESPIG_02834: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Desal_2651: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: DVU2091: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: DvMF_0797: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: LI0324: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiD |
*
Desulfohalobium retbaense DSM 5692 Site: position = -262 score = 72.73 sequence = TCTTTCGCTAGGGGA... Gene: Dret_2294: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Dbac_0928: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiZ |
Gene: Dret_2295: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: Dbac_0927: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Hydroxymethylpyrimidine ABC transporter, ATPase component |
| thiX |
Gene: Dret_2296: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: Dbac_0926: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiY |
Gene: Dret_2297: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: Dbac_0925: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| thiS |
*
Desulfohalobium retbaense DSM 5692 Site: position = -280 score = 63.68 sequence = CACAATGCTGGGGGA... Gene: Dret_0726: Sulfur carrier protein ThiS |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -187 score = 68.18 sequence = CCTCACAAGCTGGGG... Gene: Dbac_0777: Sulfur carrier protein ThiS |
*
Desulfovibrio desulfuricans G20 Site: position = -248 score = 66.67 sequence = GCCAGTGCTGGGGGG... Site: position = -409 score = 74.45 sequence = CAAACAGCTAGGGGT... Gene: Dde_1554: Sulfur carrier protein ThiS |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -239 score = 25.5 sequence = AAACCGGCTGGGGGA... Site: position = -155 score = 14.75 sequence = CCTGACGCGGATAGT... Gene: Ddes_2165: Sulfur carrier protein ThiS |
|
*
Desulfovibrio piger ATCC 29098 Site: position = -127 score = 19.61 sequence = GCCGTGCGGCCCTGC... Site: position = -179 score = 15.45 sequence = TGGGGGAGCCTGCGG... Gene: DESPIG_02760: Sulfur carrier protein ThiS |
*
Desulfovibrio salexigens DSM 2638 Site: position = -160 score = 68.08 sequence = TTCGCAGCTGGGGGT... Gene: Desal_2647: Sulfur carrier protein ThiS |
*
Desulfovibrio vulgaris Hildenborough Site: position = -423 score = 65.53 sequence = TTCAGTCAGCTAGGG... Site: position = -257 score = 55.57 sequence = CGACCGGAGCTAGGG... Gene: DVU2095: Sulfur carrier protein ThiS |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -181 score = 67.41 sequence = AACGCGAAGCTGGGG... Site: position = -381 score = 71.24 sequence = CTCATTCAGCTAGGG... Gene: DvMF_0801: Sulfur carrier protein ThiS |
|
Sulfur carrier protein ThiS |
| thiG |
Gene: Dret_0727: Thiazole synthase |
Gene: Dbac_0776: Thiazole synthase |
Gene: Dde_1555: Thiazole synthase |
Gene: Ddes_2166: Thiazole synthase |
|
Gene: DESPIG_02758: Thiazole synthase |
Gene: Desal_2648: Thiazole synthase |
Gene: DVU2094: Thiazole synthase |
Gene: DvMF_0800: Thiazole synthase |
Gene: LI0504: Thiazole synthase |
Thiazole synthase |
| thiH |
Gene: Dret_0728: 2-iminoacetate synthase (EC 1.3.99.n2) |
Gene: Dbac_0775: 2-iminoacetate synthase (EC 1.3.99.n2) |
Gene: Dde_1556: 2-iminoacetate synthase (EC 1.3.99.n2) |
Gene: Ddes_2167: 2-iminoacetate synthase (EC 1.3.99.n2) |
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Gene: DESPIG_02757: 2-iminoacetate synthase (EC 1.3.99.n2) |
Gene: Desal_2649: 2-iminoacetate synthase (EC 1.3.99.n2) |
Gene: DVU2093: 2-iminoacetate synthase (EC 1.3.99.n2) |
Gene: DvMF_0799: 2-iminoacetate synthase (EC 1.3.99.n2) |
Gene: LI0505: 2-iminoacetate synthase (EC 1.3.99.n2) |
2-iminoacetate synthase (EC 1.3.99.n2) |
| thiF |
Gene: Dret_0729: Sulfur carrier protein adenylyltransferase ThiF |
Gene: Dbac_0774: Sulfur carrier protein adenylyltransferase ThiF |
Gene: Dde_1557: Sulfur carrier protein adenylyltransferase ThiF |
Gene: Ddes_2168: Sulfur carrier protein adenylyltransferase ThiF |
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Gene: DESPIG_02756: Sulfur carrier protein adenylyltransferase ThiF |
Gene: Desal_2650: Sulfur carrier protein adenylyltransferase ThiF |
Gene: DVU2092: Sulfur carrier protein adenylyltransferase ThiF |
Gene: DvMF_0798: Sulfur carrier protein adenylyltransferase ThiF |
Gene: LI0506: Sulfur carrier protein adenylyltransferase ThiF |
Sulfur carrier protein adenylyltransferase ThiF |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |