Regulog TPP - Desulfovibrionales

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Proteobacteria/Delta

Member of regulog collections

By taxonomy - Desulfovibrionales
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Desulfohalobium retbaense DSM 5692	9	2
Desulfomicrobium baculatum DSM 4028	11	2
Desulfovibrio desulfuricans G20	5	1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	5	2
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098	2	2
Desulfovibrio salexigens DSM 2638	5	1
Desulfovibrio vulgaris Hildenborough	5	1
Desulfovibrio vulgaris str. Miyazaki F	5	1
Lawsonia intracellularis PHE/MN1-00

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
thiC	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_1680: Phosphomethylpyrimidine synthase	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -165 score = 51.74 sequence = TCCTTCGAGCTAGGG... Gene: Ddes_0628: Phosphomethylpyrimidine synthase	Desulfovibrio magneticus RS-1 Gene: DMR_31310: Phosphomethylpyrimidine synthase	* Desulfovibrio piger ATCC 29098 Site: position = -162 score = 61.32 sequence = GCCCGCCAGCTAGGG... Gene: DESPIG_01371: Phosphomethylpyrimidine synthase	Desulfovibrio salexigens DSM 2638 Gene: Desal_2338: Phosphomethylpyrimidine synthase	Desulfovibrio vulgaris Hildenborough Gene: DVU1411: Phosphomethylpyrimidine synthase	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0207: Phosphomethylpyrimidine synthase	Lawsonia intracellularis PHE/MN1-00 Gene: LI0937: Phosphomethylpyrimidine synthase	Phosphomethylpyrimidine synthase

CRON 2.

CRON 3.
thiM	Desulfohalobium retbaense DSM 5692	* Desulfomicrobium baculatum DSM 4028 Site: position = -153 score = 54.42 sequence = CGAGTTTTTGCAGGG... Gene: Dbac_0930: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Desulfovibrio desulfuricans G20 Gene: Dde_1378: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE	Desulfohalobium retbaense DSM 5692 Gene: Dret_0730: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	2 Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0773: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: Dbac_0929: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	2 Desulfovibrio desulfuricans G20 Gene: Dde_1558: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: Dde_1379: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0209: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02834: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Desulfovibrio salexigens DSM 2638 Gene: Desal_2651: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Desulfovibrio vulgaris Hildenborough Gene: DVU2091: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0797: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0324: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD	* Desulfohalobium retbaense DSM 5692 Site: position = -262 score = 72.73 sequence = TCTTTCGCTAGGGGA... Gene: Dret_2294: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0928: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
thiZ	Desulfohalobium retbaense DSM 5692 Gene: Dret_2295: Hydroxymethylpyrimidine ABC transporter, ATPase component	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0927: Hydroxymethylpyrimidine ABC transporter, ATPase component	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX	Desulfohalobium retbaense DSM 5692 Gene: Dret_2296: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0926: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY	Desulfohalobium retbaense DSM 5692 Gene: Dret_2297: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0925: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Hydroxymethylpyrimidine ABC transporter, substrate-binding component
thiS	* Desulfohalobium retbaense DSM 5692 Site: position = -280 score = 63.68 sequence = CACAATGCTGGGGGA... Gene: Dret_0726: Sulfur carrier protein ThiS	* Desulfomicrobium baculatum DSM 4028 Site: position = -187 score = 68.18 sequence = CCTCACAAGCTGGGG... Gene: Dbac_0777: Sulfur carrier protein ThiS	* Desulfovibrio desulfuricans G20 Site: position = -248 score = 66.67 sequence = GCCAGTGCTGGGGGG... Site: position = -409 score = 74.45 sequence = CAAACAGCTAGGGGT... Gene: Dde_1554: Sulfur carrier protein ThiS	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -239 score = 25.5 sequence = AAACCGGCTGGGGGA... Site: position = -155 score = 14.75 sequence = CCTGACGCGGATAGT... Gene: Ddes_2165: Sulfur carrier protein ThiS	Desulfovibrio magneticus RS-1	* Desulfovibrio piger ATCC 29098 Site: position = -127 score = 19.61 sequence = GCCGTGCGGCCCTGC... Site: position = -179 score = 15.45 sequence = TGGGGGAGCCTGCGG... Gene: DESPIG_02760: Sulfur carrier protein ThiS	* Desulfovibrio salexigens DSM 2638 Site: position = -160 score = 68.08 sequence = TTCGCAGCTGGGGGT... Gene: Desal_2647: Sulfur carrier protein ThiS	* Desulfovibrio vulgaris Hildenborough Site: position = -423 score = 65.53 sequence = TTCAGTCAGCTAGGG... Site: position = -257 score = 55.57 sequence = CGACCGGAGCTAGGG... Gene: DVU2095: Sulfur carrier protein ThiS	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -181 score = 67.41 sequence = AACGCGAAGCTGGGG... Site: position = -381 score = 71.24 sequence = CTCATTCAGCTAGGG... Gene: DvMF_0801: Sulfur carrier protein ThiS	Lawsonia intracellularis PHE/MN1-00	Sulfur carrier protein ThiS
thiG	Desulfohalobium retbaense DSM 5692 Gene: Dret_0727: Thiazole synthase	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0776: Thiazole synthase	Desulfovibrio desulfuricans G20 Gene: Dde_1555: Thiazole synthase	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2166: Thiazole synthase	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02758: Thiazole synthase	Desulfovibrio salexigens DSM 2638 Gene: Desal_2648: Thiazole synthase	Desulfovibrio vulgaris Hildenborough Gene: DVU2094: Thiazole synthase	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0800: Thiazole synthase	Lawsonia intracellularis PHE/MN1-00 Gene: LI0504: Thiazole synthase	Thiazole synthase
thiH	Desulfohalobium retbaense DSM 5692 Gene: Dret_0728: 2-iminoacetate synthase (EC 1.3.99.n2)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0775: 2-iminoacetate synthase (EC 1.3.99.n2)	Desulfovibrio desulfuricans G20 Gene: Dde_1556: 2-iminoacetate synthase (EC 1.3.99.n2)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2167: 2-iminoacetate synthase (EC 1.3.99.n2)	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02757: 2-iminoacetate synthase (EC 1.3.99.n2)	Desulfovibrio salexigens DSM 2638 Gene: Desal_2649: 2-iminoacetate synthase (EC 1.3.99.n2)	Desulfovibrio vulgaris Hildenborough Gene: DVU2093: 2-iminoacetate synthase (EC 1.3.99.n2)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0799: 2-iminoacetate synthase (EC 1.3.99.n2)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0505: 2-iminoacetate synthase (EC 1.3.99.n2)	2-iminoacetate synthase (EC 1.3.99.n2)
thiF	Desulfohalobium retbaense DSM 5692 Gene: Dret_0729: Sulfur carrier protein adenylyltransferase ThiF	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0774: Sulfur carrier protein adenylyltransferase ThiF	Desulfovibrio desulfuricans G20 Gene: Dde_1557: Sulfur carrier protein adenylyltransferase ThiF	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2168: Sulfur carrier protein adenylyltransferase ThiF	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02756: Sulfur carrier protein adenylyltransferase ThiF	Desulfovibrio salexigens DSM 2638 Gene: Desal_2650: Sulfur carrier protein adenylyltransferase ThiF	Desulfovibrio vulgaris Hildenborough Gene: DVU2092: Sulfur carrier protein adenylyltransferase ThiF	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0798: Sulfur carrier protein adenylyltransferase ThiF	Lawsonia intracellularis PHE/MN1-00 Gene: LI0506: Sulfur carrier protein adenylyltransferase ThiF	Sulfur carrier protein adenylyltransferase ThiF

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --