Regulog GEMM_RNA_motif - Desulfovibrionales
| Regulator type: | RNA regulatory element |
| Name: | GEMM_RNA_motif |
| RFAM: | RF01051 |
| Regulation mode: | |
| Biological process: | Second messenger response |
| Effector: | Cyclic diguanylate |
| Phylum: | Proteobacteria/delta |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By RNA motif - GEMM_RNA_motif
- By effector - Cyclic diguanylate
- By pathway - Second messenger response
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | ||
| Desulfovibrio vulgaris str. Miyazaki F | ||
| Desulfovibrio desulfuricans G20 | 1 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio magneticus RS-1 | 3 | 2 |
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | ||
| Desulfohalobium retbaense DSM 5692 | 2 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| Dret_0945 |
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Desulfohalobium retbaense DSM 5692 Site: position = -292 score = 62.4 sequence = ACTGACAAAGCCAAA... Gene: Dret_0945: Hypothetical protein |
Hypothetical protein |
| CRON 2. | |||||||||||
| mcp2 |
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*2
Desulfohalobium retbaense DSM 5692 Gene: Dret_2373: Methyl-accepting chemotaxis sensory transducer Site: position = -400 score = 57.85 sequence = GGACTGACAAAGCCA... Gene: Dret_0342: Methyl-accepting chemotaxis sensory transducer |
Methyl-accepting chemotaxis sensory transducer |
| CRON 3. | |||||||||||
| COG2204 |
2
Desulfovibrio vulgaris Hildenborough Gene: DVUA0025: Two component, sigma54 specific, transcriptional regulator, Fis family Gene: DVUA0024: Two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: DvMF_0699: Two component, sigma54 specific, transcriptional regulator, Fis family |
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Desulfovibrio desulfuricans G20 Site: position = -102 score = 42.71 sequence = GAGAATCAAGCCAAC... Gene: Dde_0820: Two component, sigma54 specific, transcriptional regulator, Fis family |
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Two component, sigma54 specific, transcriptional regulator, Fis family |
| CRON 4. | |||||||||||
| DMR_29160 |
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Desulfovibrio magneticus RS-1 Site: position = -241 score = 32.32 sequence = AAGTCTGTAAAGCCA... Gene: DMR_29160: Cytochrome c family protein |
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Cytochrome c family protein |
| mcp |
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Gene: Desal_1781: Methyl-accepting chemotaxis sensory transducer |
Gene: DMR_29150: Methyl-accepting chemotaxis sensory transducer |
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Methyl-accepting chemotaxis sensory transducer |
| CRON 5. | |||||||||||
| mcp |
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Desulfovibrio magneticus RS-1 Site: position = 15 score = 31.68 sequence = TGCCCAATAACGCCA... Gene: DMR_38310: Methyl-accepting chemotaxis protein |
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Methyl-accepting chemotaxis protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |