Regulog GEMM_RNA_motif - Desulfovibrionales

Properties
Regulator type:	RNA regulatory element
Name:	GEMM_RNA_motif
RFAM:	RF01051
Regulation mode:
Biological process:	Second messenger response
Effector:	Cyclic diguanylate
Phylum:	Proteobacteria/delta

Member of regulog collections

By taxonomy - Desulfovibrionales
By RNA motif - GEMM_RNA_motif
By effector - Cyclic diguanylate
By pathway - Second messenger response

Statistics of regulated genes
Genome	Genes	Operons
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris str. Miyazaki F
Desulfovibrio desulfuricans G20	1	1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638
Desulfovibrio magneticus RS-1	3	2
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028
Desulfohalobium retbaense DSM 5692	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
Dret_0945	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	* Desulfohalobium retbaense DSM 5692 Site: position = -292 score = 62.4 sequence = ACTGACAAAGCCAAA... Gene: Dret_0945: Hypothetical protein	Hypothetical protein

CRON 2.
mcp2	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	2 Desulfohalobium retbaense DSM 5692* Gene: Dret_2373: Methyl-accepting chemotaxis sensory transducer Site: position = -400 score = 57.85 sequence = GGACTGACAAAGCCA... Gene: Dret_0342: Methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis sensory transducer

CRON 3.
COG2204	2 Desulfovibrio vulgaris Hildenborough Gene: DVUA0025: Two component, sigma54 specific, transcriptional regulator, Fis family Gene: DVUA0024: Two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_0699: Two component, sigma54 specific, transcriptional regulator, Fis family	* Desulfovibrio desulfuricans G20 Site: position = -102 score = 42.71 sequence = GAGAATCAAGCCAAC... Gene: Dde_0820: Two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Two component, sigma54 specific, transcriptional regulator, Fis family

CRON 4.
DMR_29160	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	* Desulfovibrio magneticus RS-1 Site: position = -241 score = 32.32 sequence = AAGTCTGTAAAGCCA... Gene: DMR_29160: Cytochrome c family protein	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Cytochrome c family protein
mcp	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_1781: Methyl-accepting chemotaxis sensory transducer	Desulfovibrio magneticus RS-1 Gene: DMR_29150: Methyl-accepting chemotaxis sensory transducer	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Methyl-accepting chemotaxis sensory transducer

CRON 5.
mcp	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	* Desulfovibrio magneticus RS-1 Site: position = 15 score = 31.68 sequence = TGCCCAATAACGCCA... Gene: DMR_38310: Methyl-accepting chemotaxis protein	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Methyl-accepting chemotaxis protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GEMM_RNA_motif - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --