Regulog DVU0539/DVU0946 - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | 8 | 4 |
| Desulfomicrobium baculatum DSM 4028 | 4 | 1 |
| Desulfovibrio desulfuricans G20 | 4 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio magneticus RS-1 | 8 | 3 |
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 2 | 1 |
| Desulfovibrio vulgaris Hildenborough | 12 | 4 |
| Desulfovibrio vulgaris str. Miyazaki F | 13 | 4 |
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| DVU0943 |
*2
Desulfohalobium retbaense DSM 5692 Site: position = -401 score = 4.46029 sequence = TGCTAAGCGCGATTGGCA Site: position = -292 score = 4.71139 sequence = TGCAATCCCGGCTTAGCA Site: position = -268 score = 5.16324 sequence = TGCCAACCGCGGTTGGCA Site: position = -32 score = 4.38008 sequence = AGCAAAGACACGTATGCA Gene: Dret_1220: Uncharacterized membrane protein family UPF0324 Gene: Dret_0966: Uncharacterized membrane protein family UPF0324 |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -163 score = 4.05594 sequence = TGTAAACGCGACATTGCA Site: position = -182 score = 5.65995 sequence = TGCAAACTCGTGTTTGCA Gene: Dbac_2656: Uncharacterized membrane protein family UPF0324 |
*
Desulfovibrio desulfuricans G20 Site: position = -215 score = 4.79274 sequence = TGGTAACTTTGGTTTGCA Gene: Dde_0876: Uncharacterized membrane protein family UPF0324 |
Gene: Ddes_1033: Uncharacterized membrane protein family UPF0324 |
*
Desulfovibrio magneticus RS-1 Site: position = -212 score = 4.48355 sequence = TGACAACTCCAGTTTACA Gene: DMR_25930: Uncharacterized membrane protein family UPF0324 |
2
Desulfovibrio piger ATCC 29098 Gene: DESPIG_00792: Uncharacterized membrane protein family UPF0324 Gene: DESPIG_00941: Uncharacterized membrane protein family UPF0324 |
*
Desulfovibrio salexigens DSM 2638 Site: position = -189 score = 4.98388 sequence = TGCAAACTTTGCTTTGCA Site: position = -155 score = 3.83343 sequence = TGCAAGCCCAAGTAATCA Gene: Desal_0416: Uncharacterized membrane protein family UPF0324 |
*2
Desulfovibrio vulgaris Hildenborough Site: position = -196 score = 5.0022 sequence = CGCAAACGCGGGTTTGCG Site: position = -172 score = 4.49785 sequence = CGCTAACACAGGTTTACG Site: position = -153 score = 5.2449 sequence = TGCAAAGTGATGTTTGCA Gene: DVU0943: Uncharacterized membrane protein family UPF0324 Site: position = -195 score = 4.84363 sequence = TGCAAATAAAAGTTTGCA Site: position = -172 score = 5.16585 sequence = TGCAATGTCAGGTTTGCA Site: position = -153 score = 5.32789 sequence = TGCAAATTGAAGTTTGCA Gene: DVU2133: Uncharacterized membrane protein family UPF0324 |
*2
Desulfovibrio vulgaris str. Miyazaki F Site: position = -238 score = 4.36941 sequence = TGCCTTTTCGAGTTGGCA Gene: DvMF_2092: Uncharacterized membrane protein family UPF0324 Site: position = -209 score = 4.53763 sequence = TGCATACCCGCGGAGGCA Site: position = -164 score = 5.33253 sequence = TGCAAACTTCAGTTTGCG Gene: DvMF_1363: Uncharacterized membrane protein family UPF0324 |
|
Uncharacterized membrane protein family UPF0324 |
| DVU0944 |
Gene: Dret_1219: hypothetical protein |
Gene: Dbac_2655: hypothetical protein |
Gene: Dde_0877: hypothetical protein |
Gene: Ddes_1034: hypothetical protein |
Gene: DMR_25940: hypothetical protein |
2
Desulfovibrio piger ATCC 29098 Gene: DESPIG_00793: hypothetical protein Gene: DESPIG_00940: hypothetical protein |
Gene: Desal_0415: hypothetical protein |
2
Desulfovibrio vulgaris Hildenborough Gene: DVU0944: hypothetical protein Gene: DVU2132: hypothetical protein |
2
Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1362: hypothetical protein Gene: DvMF_2093: hypothetical protein |
|
hypothetical protein |
| DVU0540 |
*2
Desulfohalobium retbaense DSM 5692 Site: position = -78 score = 5.15704 sequence = TGCCAACTCGCGTTTACA Gene: Dret_0969: integral membrane sensor signal transduction histidine kinase Site: position = -484 score = 5.16324 sequence = TGCCAACCGCGGTTGGCA Site: position = -460 score = 4.67089 sequence = TGCTAAGCCGGGATTGCA Site: position = -351 score = 4.28473 sequence = TGCCAATCGCGCTTAGCA Gene: Dret_1221: integral membrane sensor signal transduction histidine kinase |
Gene: Dbac_2654: integral membrane sensor signal transduction histidine kinase |
Gene: Dde_0878: integral membrane sensor signal transduction histidine kinase |
|
*
Desulfovibrio magneticus RS-1 Site: position = -39 score = 5.13798 sequence = CGCAAACTCCAGTTAGCA Gene: DMR_33170: integral membrane sensor signal transduction histidine kinase |
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Gene: Desal_0413: integral membrane sensor signal transduction histidine kinase |
*2
Desulfovibrio vulgaris Hildenborough Gene: DVU0945: integral membrane sensor signal transduction histidine kinase Site: position = -166 score = 5.36409 sequence = TGCTAACTCGTGTTAGCA Gene: DVU0540: integral membrane sensor signal transduction histidine kinase |
*3
Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1361: integral membrane sensor signal transduction histidine kinase Site: position = -175 score = 4.76202 sequence = TGCTAACTCGCGGCAGCA Gene: DvMF_2602: integral membrane sensor signal transduction histidine kinase Gene: DvMF_2094: integral membrane sensor signal transduction histidine kinase |
|
integral membrane sensor signal transduction histidine kinase |
| DVU0539 |
2
Desulfohalobium retbaense DSM 5692 Gene: Dret_0970: two component, sigma54 specific, transcriptional regulator, Fis family Gene: Dret_1222: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: Dbac_2653: two component, sigma54 specific, transcriptional regulator, Fis family |
Gene: Dde_0879: two component, sigma54 specific, transcriptional regulator, Fis family |
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Gene: DMR_33180: two component, sigma54 specific, transcriptional regulator, Fis family |
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Gene: Desal_0412: two component, sigma54 specific, transcriptional regulator, Fis family |
2
Desulfovibrio vulgaris Hildenborough Gene: DVU0946: two component, sigma54 specific, transcriptional regulator, Fis family Gene: DVU0539: two component, sigma54 specific, transcriptional regulator, Fis family |
3
Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1360: two component, sigma54 specific, transcriptional regulator, Fis family Gene: DvMF_2601: two component, sigma54 specific, transcriptional regulator, Fis family Gene: DvMF_2095: two component, sigma54 specific, transcriptional regulator, Fis family |
|
two component, sigma54 specific, transcriptional regulator, Fis family |
| Dret_0967 |
*
Desulfohalobium retbaense DSM 5692 Site: position = -399 score = 5.00065 sequence = TGTAAACGCGAGTTGGCA Gene: Dret_0967: hypothetical protein |
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hypothetical protein |
| CRON 2. | |||||||||||
| DVU0542 |
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*
Desulfovibrio magneticus RS-1 Site: position = -129 score = 5.37588 sequence = TGCTAACTGGAGTTTGCG Gene: DMR_33160: putative universal stress protein |
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*
Desulfovibrio vulgaris Hildenborough Site: position = -149 score = 5.37409 sequence = TGCTAACACGAGTTAGCA Gene: DVU0542: putative universal stress protein |
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putative universal stress protein |
| DVU0543 |
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Gene: Ddes_0930: Uncharacterised membrane protein family UPF0324 |
Gene: DMR_33150: Uncharacterised membrane protein family UPF0324 |
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Gene: DVU0543: Uncharacterised membrane protein family UPF0324 |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -353 score = 4.79632 sequence = TGCTGCCGCGAGTTAGCA Gene: DvMF_2603: Uncharacterised membrane protein family UPF0324 |
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Uncharacterised membrane protein family UPF0324 |
| Dbac_0036 |
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Gene: Ddes_0931: hypothetical protein |
Gene: DMR_33140: hypothetical protein |
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Gene: DVU0544: hypothetical protein |
Gene: DvMF_2604: hypothetical protein |
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protein of unknown function DUF201 |
| Ddes_0932 |
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Gene: Ddes_0932: hypothetical protein |
Gene: DMR_33130: hypothetical protein |
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Gene: DVU0545: hypothetical protein |
Gene: DvMF_2605: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |