Regulog DVU0539/DVU0946 - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 30 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Fis

Statistics of regulated genes
Genome	Genes	Operons
Desulfohalobium retbaense DSM 5692	8	4
Desulfomicrobium baculatum DSM 4028	4	1
Desulfovibrio desulfuricans G20	4	1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio magneticus RS-1	8	3
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638	2	1
Desulfovibrio vulgaris Hildenborough	12	4
Desulfovibrio vulgaris str. Miyazaki F	13	4
Lawsonia intracellularis PHE/MN1-00

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
DVU0943	2 Desulfohalobium retbaense DSM 5692* Site: position = -401 score = 4.46029 sequence = TGCTAAGCGCGATTGGCA Site: position = -292 score = 4.71139 sequence = TGCAATCCCGGCTTAGCA Site: position = -268 score = 5.16324 sequence = TGCCAACCGCGGTTGGCA Site: position = -32 score = 4.38008 sequence = AGCAAAGACACGTATGCA Gene: Dret_1220: Uncharacterized membrane protein family UPF0324 Gene: Dret_0966: Uncharacterized membrane protein family UPF0324	* Desulfomicrobium baculatum DSM 4028 Site: position = -163 score = 4.05594 sequence = TGTAAACGCGACATTGCA Site: position = -182 score = 5.65995 sequence = TGCAAACTCGTGTTTGCA Gene: Dbac_2656: Uncharacterized membrane protein family UPF0324	* Desulfovibrio desulfuricans G20 Site: position = -215 score = 4.79274 sequence = TGGTAACTTTGGTTTGCA Gene: Dde_0876: Uncharacterized membrane protein family UPF0324	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1033: Uncharacterized membrane protein family UPF0324	* Desulfovibrio magneticus RS-1 Site: position = -212 score = 4.48355 sequence = TGACAACTCCAGTTTACA Gene: DMR_25930: Uncharacterized membrane protein family UPF0324	2 Desulfovibrio piger ATCC 29098 Gene: DESPIG_00792: Uncharacterized membrane protein family UPF0324 Gene: DESPIG_00941: Uncharacterized membrane protein family UPF0324	* Desulfovibrio salexigens DSM 2638 Site: position = -189 score = 4.98388 sequence = TGCAAACTTTGCTTTGCA Site: position = -155 score = 3.83343 sequence = TGCAAGCCCAAGTAATCA Gene: Desal_0416: Uncharacterized membrane protein family UPF0324	2 Desulfovibrio vulgaris Hildenborough* Site: position = -196 score = 5.0022 sequence = CGCAAACGCGGGTTTGCG Site: position = -172 score = 4.49785 sequence = CGCTAACACAGGTTTACG Site: position = -153 score = 5.2449 sequence = TGCAAAGTGATGTTTGCA Gene: DVU0943: Uncharacterized membrane protein family UPF0324 Site: position = -195 score = 4.84363 sequence = TGCAAATAAAAGTTTGCA Site: position = -172 score = 5.16585 sequence = TGCAATGTCAGGTTTGCA Site: position = -153 score = 5.32789 sequence = TGCAAATTGAAGTTTGCA Gene: DVU2133: Uncharacterized membrane protein family UPF0324	2 Desulfovibrio vulgaris str. Miyazaki F* Site: position = -238 score = 4.36941 sequence = TGCCTTTTCGAGTTGGCA Gene: DvMF_2092: Uncharacterized membrane protein family UPF0324 Site: position = -209 score = 4.53763 sequence = TGCATACCCGCGGAGGCA Site: position = -164 score = 5.33253 sequence = TGCAAACTTCAGTTTGCG Gene: DvMF_1363: Uncharacterized membrane protein family UPF0324	Lawsonia intracellularis PHE/MN1-00	Uncharacterized membrane protein family UPF0324
DVU0944	Desulfohalobium retbaense DSM 5692 Gene: Dret_1219: hypothetical protein	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2655: hypothetical protein	Desulfovibrio desulfuricans G20 Gene: Dde_0877: hypothetical protein	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1034: hypothetical protein	Desulfovibrio magneticus RS-1 Gene: DMR_25940: hypothetical protein	2 Desulfovibrio piger ATCC 29098 Gene: DESPIG_00793: hypothetical protein Gene: DESPIG_00940: hypothetical protein	Desulfovibrio salexigens DSM 2638 Gene: Desal_0415: hypothetical protein	2 Desulfovibrio vulgaris Hildenborough Gene: DVU0944: hypothetical protein Gene: DVU2132: hypothetical protein	2 Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1362: hypothetical protein Gene: DvMF_2093: hypothetical protein	Lawsonia intracellularis PHE/MN1-00	hypothetical protein
DVU0540	2 Desulfohalobium retbaense DSM 5692* Site: position = -78 score = 5.15704 sequence = TGCCAACTCGCGTTTACA Gene: Dret_0969: integral membrane sensor signal transduction histidine kinase Site: position = -484 score = 5.16324 sequence = TGCCAACCGCGGTTGGCA Site: position = -460 score = 4.67089 sequence = TGCTAAGCCGGGATTGCA Site: position = -351 score = 4.28473 sequence = TGCCAATCGCGCTTAGCA Gene: Dret_1221: integral membrane sensor signal transduction histidine kinase	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2654: integral membrane sensor signal transduction histidine kinase	Desulfovibrio desulfuricans G20 Gene: Dde_0878: integral membrane sensor signal transduction histidine kinase	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	* Desulfovibrio magneticus RS-1 Site: position = -39 score = 5.13798 sequence = CGCAAACTCCAGTTAGCA Gene: DMR_33170: integral membrane sensor signal transduction histidine kinase	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_0413: integral membrane sensor signal transduction histidine kinase	2 Desulfovibrio vulgaris Hildenborough* Gene: DVU0945: integral membrane sensor signal transduction histidine kinase Site: position = -166 score = 5.36409 sequence = TGCTAACTCGTGTTAGCA Gene: DVU0540: integral membrane sensor signal transduction histidine kinase	3 Desulfovibrio vulgaris str. Miyazaki F* Gene: DvMF_1361: integral membrane sensor signal transduction histidine kinase Site: position = -175 score = 4.76202 sequence = TGCTAACTCGCGGCAGCA Gene: DvMF_2602: integral membrane sensor signal transduction histidine kinase Gene: DvMF_2094: integral membrane sensor signal transduction histidine kinase	Lawsonia intracellularis PHE/MN1-00	integral membrane sensor signal transduction histidine kinase
DVU0539	2 Desulfohalobium retbaense DSM 5692 Gene: Dret_0970: two component, sigma54 specific, transcriptional regulator, Fis family Gene: Dret_1222: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2653: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio desulfuricans G20 Gene: Dde_0879: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_33180: two component, sigma54 specific, transcriptional regulator, Fis family	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_0412: two component, sigma54 specific, transcriptional regulator, Fis family	2 Desulfovibrio vulgaris Hildenborough Gene: DVU0946: two component, sigma54 specific, transcriptional regulator, Fis family Gene: DVU0539: two component, sigma54 specific, transcriptional regulator, Fis family	3 Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1360: two component, sigma54 specific, transcriptional regulator, Fis family Gene: DvMF_2601: two component, sigma54 specific, transcriptional regulator, Fis family Gene: DvMF_2095: two component, sigma54 specific, transcriptional regulator, Fis family	Lawsonia intracellularis PHE/MN1-00	two component, sigma54 specific, transcriptional regulator, Fis family
Dret_0967	* Desulfohalobium retbaense DSM 5692 Site: position = -399 score = 5.00065 sequence = TGTAAACGCGAGTTGGCA Gene: Dret_0967: hypothetical protein	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	hypothetical protein

CRON 2.
DVU0542	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	* Desulfovibrio magneticus RS-1 Site: position = -129 score = 5.37588 sequence = TGCTAACTGGAGTTTGCG Gene: DMR_33160: putative universal stress protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	* Desulfovibrio vulgaris Hildenborough Site: position = -149 score = 5.37409 sequence = TGCTAACACGAGTTAGCA Gene: DVU0542: putative universal stress protein	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	putative universal stress protein
DVU0543	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0930: Uncharacterised membrane protein family UPF0324	Desulfovibrio magneticus RS-1 Gene: DMR_33150: Uncharacterised membrane protein family UPF0324	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough Gene: DVU0543: Uncharacterised membrane protein family UPF0324	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -353 score = 4.79632 sequence = TGCTGCCGCGAGTTAGCA Gene: DvMF_2603: Uncharacterised membrane protein family UPF0324	Lawsonia intracellularis PHE/MN1-00	Uncharacterised membrane protein family UPF0324
Dbac_0036	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0931: hypothetical protein	Desulfovibrio magneticus RS-1 Gene: DMR_33140: hypothetical protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough Gene: DVU0544: hypothetical protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2604: hypothetical protein	Lawsonia intracellularis PHE/MN1-00	protein of unknown function DUF201
Ddes_0932	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0932: hypothetical protein	Desulfovibrio magneticus RS-1 Gene: DMR_33130: hypothetical protein	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough Gene: DVU0545: hypothetical protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2605: hypothetical protein	Lawsonia intracellularis PHE/MN1-00	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DVU0539/DVU0946 - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --