Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RpoN in Desulfovibrio piger ATCC 29098

Properties
Regulator type: Transcription factor
TF locus tag: DESPIG_00589
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Regulog: RpoN - Desulfovibrionales
Statistics of regulated genes:
- Genes 68
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 487 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -80
Score: 4.8
Sequence: AATGGCACAGGCATTGCTA
Locus tag: DESPIG_02849
Name: null
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: DESPIG_02850
Name: null
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Locus tag: DESPIG_02851
Name: null
Funciton: PAS modulated sigma54 specific transcriptional regulator, Fis family
DESPIG_02849
Pyruvate formate-lyase (EC 2.3.1.54)
DESPIG_02850
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
DESPIG_02851
PAS modulated sigma54 specific transcriptional regulator, Fis family
Position: -147
Score: 5.3
Sequence: TATGGCACGCTTGTTGCTG
Locus tag: DESPIG_02139
Name: null
Funciton: cationic amino acid transporter
DESPIG_02139
cationic amino acid transporter
Position: 8
Score: 3.6
Sequence: TGCGGCCGGCATGCTGCTG
Locus tag: DESPIG_01518
Name: nudF
Funciton: ADP-ribose pyrophosphatase (EC 3.6.1.13)
Locus tag: DESPIG_01519
Name: null
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Locus tag: DESPIG_01520
Name: nadE
Funciton: NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase
DESPIG_01518
nudF
ADP-ribose pyrophosphatase (EC 3.6.1.13)
DESPIG_01519
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
DESPIG_01520
nadE
NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase
Position: -112
Score: 4
Sequence: TTCGGAGCAGGTCTTGCTG
Locus tag: DESPIG_02393
Name: glcD
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Locus tag: DESPIG_02394
Name: glcF
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Locus tag: DESPIG_02395
Name: lldG
Funciton: L-lactate dehydrogenase, hypothetical protein subunit LldG
Locus tag: DESPIG_02396
Name: lldEF
Funciton: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
DESPIG_02393
glcD
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
DESPIG_02394
glcF
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
DESPIG_02395
lldG
L-lactate dehydrogenase, hypothetical protein subunit LldG
DESPIG_02396
lldEF
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
Position: -128
Score: 4.4
Sequence: GCTTGCATGTTTTTTGCAA
Locus tag: DESPIG_02787
Name: zraP
Funciton: Zinc resistance-associated protein
DESPIG_02787
zraP
Zinc resistance-associated protein
Position: -127
Score: 5.1
Sequence: TATGGCACAGGGCTTGCTT
Locus tag: DESPIG_00642
Name: amt
Funciton: Ammonium transporter
Locus tag: DESPIG_00641
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: DESPIG_00640
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00639
Name: null
Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
DESPIG_00642
amt
Ammonium transporter
DESPIG_00641
glnB
Nitrogen regulatory protein P-II
DESPIG_00640
hypothetical protein
DESPIG_00639
Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Position: -105
Score: 5.3
Sequence: ATTGGCACGGGTGTTGCTT
Locus tag: DESPIG_02990
Name: null
Funciton: hypothetical membrane protein
Locus tag: DESPIG_02991
Name: null
Funciton: hypothetical membrane protein
Locus tag: DESPIG_02992
Name: null
Funciton: lipoprotein, putative
Locus tag: DESPIG_02993
Name: null
Funciton: lipoprotein, putative
Locus tag: DESPIG_02994
Name: null
Funciton: hypothetical protein
DESPIG_02990
hypothetical membrane protein
DESPIG_02991
hypothetical membrane protein
DESPIG_02992
lipoprotein, putative
DESPIG_02993
lipoprotein, putative
DESPIG_02994
hypothetical protein
Position: -119
Score: 5.4
Sequence: ACTGGCACGCCCCTTGCTC
Locus tag: DESPIG_01831
Name: nrfH
Funciton: Cytochrome c nitrite reductase, small subunit NrfH
Locus tag: DESPIG_01830
Name: nrfA
Funciton: Cytochrome c nitrite reductase, catalytic subunit NrfA
DESPIG_01831
nrfH
Cytochrome c nitrite reductase, small subunit NrfH
DESPIG_01830
nrfA
Cytochrome c nitrite reductase, catalytic subunit NrfA
Position: -99
Score: 5.1
Sequence: TTTGGCACAGCCTATGCTT
Locus tag: DESPIG_02142
Name: null
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: DESPIG_02143
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Locus tag: DESPIG_02144
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_02145
Name: null
Funciton: hypothetical protein
DESPIG_02142
Pyruvate formate-lyase (EC 2.3.1.54)
DESPIG_02143
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
DESPIG_02144
hypothetical protein
DESPIG_02145
hypothetical protein
Position: -68
Score: 5.3
Sequence: TCTGGCACGGTTCCTGCTG
Locus tag: DESPIG_02193
Name: null
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: DESPIG_02194
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
DESPIG_02193
Pyruvate formate-lyase (EC 2.3.1.54)
DESPIG_02194
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -51
Score: 4.8
Sequence: TTTGGCCTTGTTCTTGCAT
Locus tag: DESPIG_02462
Name: fliM
Funciton: Flagellar motor switch protein FliM
DESPIG_02462
fliM
Flagellar motor switch protein FliM
Position: -110
Score: 5.1
Sequence: TTTGGCACGCGGGTTGCTA
Locus tag: DESPIG_02788
Name: zraP
Funciton: Zinc resistance-associated protein
DESPIG_02788
zraP
Zinc resistance-associated protein
Position: -49
Score: 5.1
Sequence: AATGGCATGTTTTTTGCTG
Locus tag: DESPIG_02269
Name: null
Funciton: hypothetical membrane protein
Locus tag: DESPIG_02268
Name: null
Funciton: hypothetical membrane protein
DESPIG_02269
hypothetical membrane protein
DESPIG_02268
hypothetical membrane protein
Position: -59
Score: 4.6
Sequence: CATGGTACGTTTTATGCTT
Locus tag: DESPIG_00156
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00157
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00158
Name: null
Funciton: hypothetical protein
DESPIG_00156
hypothetical protein
DESPIG_00157
hypothetical protein
DESPIG_00158
hypothetical protein
Position: -54
Score: 5.2
Sequence: CATGGCACGCTTTATGCTT
Locus tag: DESPIG_00690
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00691
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00692
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00693
Name: null
Funciton: Type III secretion chaperone protein for YopD (SycD)
Locus tag: DESPIG_00694
Name: null
Funciton: Type III secretion host injection protein (YopB)
Locus tag: DESPIG_00695
Name: null
Funciton: Type III secretion host injection and negative regulator protein (YopD)
Locus tag: DESPIG_00696
Name: null
Funciton: Tir chaperone family protein
Locus tag: DESPIG_00697
Name: yscC
Funciton: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
Locus tag: DESPIG_00698
Name: null
Funciton: Type III secretion inner membrane protein (YscD,homologous to flagellar export components)
Locus tag: DESPIG_00699
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00700
Name: null
Funciton: Type III secretion system protein, YscF family
Locus tag: DESPIG_00701
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00702
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00703
Name: escJ
Funciton: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
Locus tag: DESPIG_00704
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00705
Name: sctL
Funciton: type III secretion protein, YopL family putative type III secretion protein
Locus tag: DESPIG_00706
Name: null
Funciton: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)
Locus tag: DESPIG_00707
Name: null
Funciton: Type III secretion spans bacterial envelope protein (YscO)
DESPIG_00690
hypothetical protein
DESPIG_00691
hypothetical protein
DESPIG_00692
hypothetical protein
DESPIG_00693
Type III secretion chaperone protein for YopD (SycD)
DESPIG_00694
Type III secretion host injection protein (YopB)
DESPIG_00695
Type III secretion host injection and negative regulator protein (YopD)
DESPIG_00696
Tir chaperone family protein
DESPIG_00697
yscC
Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
DESPIG_00698
Type III secretion inner membrane protein (YscD,homologous to flagellar export components)
DESPIG_00699
hypothetical protein
DESPIG_00700
Type III secretion system protein, YscF family
DESPIG_00701
hypothetical protein
DESPIG_00702
hypothetical protein
DESPIG_00703
escJ
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
DESPIG_00704
hypothetical protein
DESPIG_00705
sctL
type III secretion protein, YopL family putative type III secretion protein
DESPIG_00706
Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)
DESPIG_00707
Type III secretion spans bacterial envelope protein (YscO)
Position: -43
Score: 4.1
Sequence: CCTGGTCTATCTTTTGCAA
Locus tag: DESPIG_01879
Name: null
Funciton: Type III secretion chaperone, CesT family
Locus tag: DESPIG_01878
Name: null
Funciton: hypothetical protein
DESPIG_01879
Type III secretion chaperone, CesT family
DESPIG_01878
hypothetical protein
Position: -73
Score: 4.5
Sequence: TGTGGCATGATTCTGGCAT
Locus tag: DESPIG_00689
Name: null
Funciton: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
Locus tag: DESPIG_00688
Name: sycN
Funciton: Type III secretion chaperone SycN
Locus tag: DESPIG_00687
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_00686
Name: null
Funciton: Chaperone protein YscY (Yop proteins translocation protein Y)
Locus tag: DESPIG_00685
Name: sctV
Funciton: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)
Locus tag: DESPIG_00684
Name: invX
Funciton: Type III secretion inner membrane protein (YscS,homologous to flagellar export components)
Locus tag: DESPIG_00683
Name: escT
Funciton: Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)
Locus tag: DESPIG_00682
Name: flhB
Funciton: Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)
Locus tag: DESPIG_00681
Name: flrC
Funciton: sigma54 specific transcriptional regulator, Fis family
Locus tag: DESPIG_00680
Name: null
Funciton: protein serine/threonine phosphatase
DESPIG_00689
Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
DESPIG_00688
sycN
Type III secretion chaperone SycN
DESPIG_00687
hypothetical protein
DESPIG_00686
Chaperone protein YscY (Yop proteins translocation protein Y)
DESPIG_00685
sctV
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)
DESPIG_00684
invX
Type III secretion inner membrane protein (YscS,homologous to flagellar export components)
DESPIG_00683
escT
Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)
DESPIG_00682
flhB
Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)
DESPIG_00681
flrC
sigma54 specific transcriptional regulator, Fis family
DESPIG_00680
protein serine/threonine phosphatase
Position: -57
Score: 5.3
Sequence: ATTGGCACGGACTTTGCTG
Locus tag: DESPIG_02585
Name: null
Funciton: hypothetical protein
Locus tag: DESPIG_02584
Name: null
Funciton: Altronate dehydratase
DESPIG_02585
hypothetical protein
DESPIG_02584
Altronate dehydratase
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