Regulog DVUA0100 - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 34 | 3 |
| Desulfovibrio vulgaris str. Miyazaki F | 34 | 3 |
| Desulfovibrio desulfuricans G20 | ||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio magneticus RS-1 | ||
| Desulfovibrio piger ATCC 29098 | 32 | 3 |
| Lawsonia intracellularis PHE/MN1-00 | 3 | 1 |
| Desulfomicrobium baculatum DSM 4028 | ||
| Desulfohalobium retbaense DSM 5692 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| DvMF_2420 |
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Desulfovibrio vulgaris Hildenborough Site: position = -204 score = 4.52671 sequence = GCCAACAACACTGCC Site: position = -172 score = 5.35621 sequence = GGCAACGATGTTGGC Gene: null: hypothetical protein |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -154 score = 4.82928 sequence = GCTAACGTTGTTGGA Gene: DvMF_2420: hypothetical protein |
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*2
Desulfovibrio piger ATCC 29098 Site: position = -119 score = 4.48041 sequence = ATCAAAAATGTTGGC Gene: DESPIG_00690: hypothetical protein Gene: DESPIG_00156: hypothetical protein |
Gene: LI0545: hypothetical protein |
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hypothetical protein |
| DvMF_2421 |
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Gene: DvMF_2421: hypothetical protein |
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4
Desulfovibrio piger ATCC 29098 Gene: DESPIG_00692: hypothetical protein Gene: DESPIG_00691: hypothetical protein Gene: DESPIG_00157: hypothetical protein Gene: DESPIG_00158: hypothetical protein |
3
Lawsonia intracellularis PHE/MN1-00 Gene: LI1155: hypothetical protein Gene: LI1156: hypothetical protein Gene: LI1154: hypothetical protein |
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hypothetical protein |
| DVUA0109 |
Gene: DVUA0109: Type III secretion chaperone protein for YopD (SycD) |
Gene: DvMF_2422: Type III secretion chaperone protein for YopD (SycD) |
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Gene: DESPIG_00693: Type III secretion chaperone protein for YopD (SycD) |
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Lawsonia intracellularis PHE/MN1-00 Site: position = -271 score = 5.37017 sequence = GCCAACCTTGTTGGC Gene: LI1157: Type III secretion chaperone protein for YopD (SycD) |
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Type III secretion chaperone protein for YopD (SycD) |
| DVUA0110 |
Gene: DVUA0110: Type III secretion host injection protein (YopB) |
Gene: DvMF_2423: Type III secretion host injection protein (YopB) |
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Gene: DESPIG_00694: Type III secretion host injection protein (YopB) |
Gene: LI1158: Type III secretion host injection protein (YopB) |
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Type III secretion host injection protein (YopB) |
| DVUA0111 |
Gene: DVUA0111: Type III secretion host injection and negative regulator protein (YopD) |
Gene: DvMF_2424: Type III secretion host injection and negative regulator protein (YopD) |
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Desulfovibrio piger ATCC 29098 Site: position = -254 score = 4.18284 sequence = GCAAACACCATTGCC Gene: DESPIG_00695: Type III secretion host injection and negative regulator protein (YopD) |
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Type III secretion host injection and negative regulator protein (YopD) |
| DvMF_2425 |
Gene: null: Tir chaperone family protein |
Gene: DvMF_2425: Tir chaperone family protein |
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Gene: DESPIG_00696: Tir chaperone family protein |
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Tir chaperone family protein |
| yscC |
Gene: DVUA0112: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) |
Gene: DvMF_2426: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) |
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Gene: DESPIG_00697: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) |
Gene: LI1160: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) |
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Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) |
| DVUA0113 |
Gene: DVUA0113: Type III secretion inner membrane protein (YscD,homologous to flagellar export components) |
Gene: DvMF_2427: Type III secretion inner membrane protein (YscD,homologous to flagellar export components) |
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Gene: DESPIG_00698: Type III secretion inner membrane protein (YscD,homologous to flagellar export components) |
Gene: LI1161: Type III secretion inner membrane protein (YscD,homologous to flagellar export components) |
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Type III secretion inner membrane protein (YscD,homologous to flagellar export components) |
| DVUA0114 |
Gene: DVUA0114: hypothetical protein |
Gene: DvMF_2428: hypothetical protein |
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Gene: DESPIG_00699: hypothetical protein |
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hypothetical protein |
| DVUA0115 |
Gene: DVUA0115: Type III secretion system protein, YscF family |
Gene: DvMF_2429: Type III secretion system protein, YscF family |
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Gene: DESPIG_00700: Type III secretion system protein, YscF family |
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Type III secretion system protein, YscF family |
| DVUA0116 |
Gene: DVUA0116: hypothetical protein |
Gene: DvMF_2430: hypothetical protein |
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Gene: DESPIG_00701: hypothetical protein |
Gene: LI0544: hypothetical protein |
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hypothetical protein |
| DvMF_2431 |
Gene: null: hypothetical protein |
Gene: DvMF_2431: hypothetical protein |
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Gene: DESPIG_00702: hypothetical protein |
Gene: LI1162: hypothetical protein |
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hypothetical protein |
| escJ |
Gene: DVUA0117: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) |
Gene: DvMF_2432: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) |
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Gene: DESPIG_00703: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) |
2
Lawsonia intracellularis PHE/MN1-00 Gene: LI0543: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) Gene: LI1163: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) |
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Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) |
| DvMF_2433 |
Gene: null: hypothetical protein |
Gene: DvMF_2433: hypothetical protein |
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Gene: DESPIG_00704: hypothetical protein |
Gene: LI0542: hypothetical protein |
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hypothetical protein |
| sctL |
Gene: DVUA0118: Type III secretion cytoplasmic protein (YscL) |
Gene: DvMF_2434: Type III secretion cytoplasmic protein (YscL) |
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Gene: DESPIG_00705: Type III secretion cytoplasmic protein (YscL) |
2
Lawsonia intracellularis PHE/MN1-00 Gene: LI0541: Type III secretion cytoplasmic protein (YscL) Gene: LI1164: Type III secretion cytoplasmic protein (YscL) |
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Type III secretion cytoplasmic protein (YscL) |
| sctN |
Gene: DVUA0119: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) |
Gene: DvMF_2435: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) |
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Gene: DESPIG_00706: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) |
Gene: LI0540: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) |
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Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN) |
| DvMF_2436 |
Gene: null: Type III secretion spans bacterial envelope protein (YscO) |
Gene: DvMF_2436: Type III secretion spans bacterial envelope protein (YscO) |
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Gene: DESPIG_00707: Type III secretion spans bacterial envelope protein (YscO) |
Gene: LI0539: Type III secretion spans bacterial envelope protein (YscO) |
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Type III secretion spans bacterial envelope protein (YscO) |
| DVUA0120 |
Gene: DVUA0120: HpaP protein; Type III secretion protein (YscP) |
Gene: DvMF_2437: HpaP protein; Type III secretion protein (YscP) |
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Gene: DESPIG_00708: HpaP protein; Type III secretion protein (YscP) |
Gene: LI1165: HpaP protein; Type III secretion protein (YscP) |
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HpaP protein; Type III secretion protein (YscP) |
| DVUA0121 |
Gene: DVUA0121: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) |
Gene: DvMF_2438: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) |
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Gene: DESPIG_00709: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) |
2
Lawsonia intracellularis PHE/MN1-00 Gene: LI1166: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) Gene: LI0538: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) |
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Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) |
| yscR |
Gene: DVUA0122: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) |
Gene: DvMF_2439: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) |
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Gene: DESPIG_00710: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) |
Gene: LI0537: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) |
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Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) |
| DVUA0123 |
Gene: DVUA0123: anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV |
Gene: DvMF_2440: anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV |
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Gene: DESPIG_00711: anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV |
Gene: LI1167: anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV |
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anti-sigma F factor antagonist (spoIIAA-2); anti sigma b factor antagonist RsbV |
| rsbW |
Gene: DVUA0124: putative anti-sigma regulatory factor, serine/threonine protein kinase |
Gene: DvMF_2441: putative anti-sigma regulatory factor, serine/threonine protein kinase |
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Gene: DESPIG_00712: putative anti-sigma regulatory factor, serine/threonine protein kinase |
Gene: LI1168: putative anti-sigma regulatory factor, serine/threonine protein kinase |
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putative anti-sigma regulatory factor, serine/threonine protein kinase |
| slt |
Gene: DVUA0125: transglycosylase, SLT family |
Gene: DvMF_2442: transglycosylase, SLT family |
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Gene: DESPIG_00713: transglycosylase, SLT family |
Gene: LI1169: transglycosylase, SLT family |
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transglycosylase, SLT family |
| LI1159 |
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Gene: LI1159: hypothetical protein |
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hypothetical protein |
| CRON 2. | |||||||||||
| DVUA0106 |
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Desulfovibrio vulgaris Hildenborough Site: position = -517 score = 4.52671 sequence = GGCAGTGTTGTTGGC Site: position = -549 score = 5.35621 sequence = GCCAACATCGTTGCC Site: position = -227 score = 4.25865 sequence = TGCAACGTTGTTGCT Gene: DVUA0106: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA) |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -422 score = 4.82928 sequence = TCCAACAACGTTAGC Gene: DvMF_2419: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA) |
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Desulfovibrio piger ATCC 29098 Site: position = -216 score = 4.48041 sequence = GCCAACATTTTTGAT Gene: DESPIG_00689: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA) |
Gene: LI1153: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA) |
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Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA) |
| DVUA0105 |
Gene: DVUA0105: Type III secretion chaperone SycN |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -437 score = 4.23429 sequence = GGCAACGACCTTGCC Gene: DvMF_2418: Type III secretion chaperone SycN |
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Gene: DESPIG_00688: Type III secretion chaperone SycN |
Gene: LI0546: Type III secretion chaperone SycN |
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Type III secretion chaperone SycN |
| DvMF_2417 |
Gene: null: hypothetical protein |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -402 score = 4.06841 sequence = GACAATGATGTTGCA Gene: DvMF_2417: hypothetical protein |
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Gene: DESPIG_00687: hypothetical protein |
Gene: LI1152: hypothetical protein |
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hypothetical protein |
| DvMF_2416 |
Gene: null: Chaperone protein YscY (Yop proteins translocation protein Y) |
Gene: DvMF_2416: Chaperone protein YscY (Yop proteins translocation protein Y) |
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Gene: DESPIG_00686: Chaperone protein YscY (Yop proteins translocation protein Y) |
Gene: LI0547: Chaperone protein YscY (Yop proteins translocation protein Y) |
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Chaperone protein YscY (Yop proteins translocation protein Y) |
| sctV |
Gene: DVUA0104: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) |
Gene: DvMF_2415: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) |
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Gene: DESPIG_00685: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) |
Gene: LI0548: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) |
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Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) |
| invX |
Gene: DVUA0103: Type III secretion inner membrane protein (YscS,homologous to flagellar export components) |
Gene: DvMF_2414: Type III secretion inner membrane protein (YscS,homologous to flagellar export components) |
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Gene: DESPIG_00684: Type III secretion inner membrane protein (YscS,homologous to flagellar export components) |
Gene: LI0549: Type III secretion inner membrane protein (YscS,homologous to flagellar export components) |
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Type III secretion inner membrane protein (YscS,homologous to flagellar export components) |
| escT |
Gene: DVUA0102: Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) |
Gene: DvMF_2413: Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) |
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Gene: DESPIG_00683: Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) |
Gene: LI0550: Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) |
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Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) |
| flhB |
Gene: DVUA0101: Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -177 score = 4.06556 sequence = GTCAACCGTTTTGCC Gene: DvMF_2412: Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) |
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Gene: DESPIG_00682: Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) |
Gene: LI0551: Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) |
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Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) |
| DVUA0100 |
Gene: DVUA0100: transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
Gene: DvMF_2411: transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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Gene: DESPIG_00681: transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
Gene: LI1151: transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
| DORF807 |
Gene: null: hypothetical protein |
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hypothetical protein |
| DVUA0099 |
Gene: DVUA0099: protein serine/threonine phosphatase |
Gene: DvMF_2410: protein serine/threonine phosphatase |
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Gene: DESPIG_00680: protein serine/threonine phosphatase |
Gene: LI1150: protein serine/threonine phosphatase |
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protein serine/threonine phosphatase |
| DvMF_2406 |
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Desulfovibrio vulgaris Hildenborough Site: position = -300 score = 4.47506 sequence = GCCAACAGCATGGGC Site: position = -277 score = 5.18967 sequence = GCCAACGCTATTGGC Gene: null |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -301 score = 5.65471 sequence = GCCAACACTGTTGGC Gene: DvMF_2406: hypothetical protein |
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Desulfovibrio piger ATCC 29098 Site: position = -475 score = 4.72529 sequence = GCCAACATCATTGCA Gene: DESPIG_01878: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |