Regulog PhnF - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Phosphonate utilization |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By trascription factor - PhnF
- By TF family - GntR/Others
- By pathway - Phosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | ||
| Desulfomicrobium baculatum DSM 4028 | 15 | 3 |
| Desulfovibrio desulfuricans G20 | 10 | 2 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio magneticus RS-1 | ||
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio vulgaris Hildenborough | ||
| Desulfovibrio vulgaris str. Miyazaki F | ||
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| phnF |
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Desulfomicrobium baculatum DSM 4028 Site: position = -79 score = 5.1981 sequence = ATTTGTATAGACATCT Gene: Dbac_0812: Transcriptional regulator for phosphonate utilization, GntR family |
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Desulfovibrio desulfuricans G20 Site: position = -112 score = 5.62401 sequence = GGTTGTCTAGATAACT Gene: Dde_3327: Transcriptional regulator for phosphonate utilization, GntR family |
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Transcriptional regulator for phosphonate utilization, GntR family |
| CRON 2. | |||||||||||
| phnG |
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Desulfomicrobium baculatum DSM 4028 Site: position = -39 score = 5.23376 sequence = AGATGTCTATACAAAT Gene: Dbac_0813: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
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Desulfovibrio desulfuricans G20 Site: position = -40 score = 5.72096 sequence = AGTTATCTAGACAACC Gene: Dde_3328: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
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Gene: DESPIG_01262: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
| phnH |
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Gene: Dbac_0814: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
Gene: Dde_3329: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
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Gene: DESPIG_01261: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
| phnI |
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Gene: Dbac_0815: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
Gene: Dde_3330: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
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Gene: DESPIG_01260: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
| phnJ |
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Gene: Dbac_0816: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
Gene: Dde_3331: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
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Gene: DESPIG_01259: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
| phnK |
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Gene: Dbac_0817: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
Gene: Dde_3332: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
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Gene: DESPIG_01258: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
| phnL |
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Gene: Dbac_0818: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
Gene: Dde_3333: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
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Gene: DESPIG_01257: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
| phnM |
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2
Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0826: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase Gene: Dbac_0819: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
Gene: Dde_3334: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
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Gene: DESPIG_01256: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
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Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
| phnN |
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Gene: Dbac_0820: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
Gene: Dde_3336: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
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Gene: DESPIG_01255: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
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Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
| Dbac_0821 |
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Gene: Dbac_0821: phosphonate metabolim protein, transferase hexapeptide repeat family |
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phosphonate metabolim protein, transferase hexapeptide repeat family |
| rcsF |
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Gene: Dbac_0825: Protein RcsF involved in phosphonates utilization |
Gene: Dde_3335: Protein RcsF involved in phosphonates utilization |
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Gene: DESPIG_01263: Protein RcsF involved in phosphonates utilization |
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Protein RcsF involved in phosphonates utilization |
| phnC |
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Desulfomicrobium baculatum DSM 4028 Site: position = -93 score = 5.72096 sequence = AGTTGTCTAGACCACT Gene: Dbac_0829: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) |
Gene: Dde_3324: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) |
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Gene: DESPIG_01266: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) |
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Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) |
| phnD |
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Gene: Dbac_0828: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
Gene: Dde_3325: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
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Gene: DESPIG_01265: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
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Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
| phnE |
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Gene: Dbac_0827: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
Gene: Dde_3326: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
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Gene: DESPIG_01264: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
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Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |