Collection of regulogs for PhnF transcription factor
Genomes | 115 |
TF regulogs | 11 |
TF regulons | 47 |
TF binding sites | 95 |
Transcription factor PhnF from the GntR protein family regulates the phosphonate utilization genes in Proteobacteria. In E.coli, phnF was identified as a part of the phn gene locus, however it was uncharacterized. The PhnF regulon and its DNA-binding motif were discovered by application of the comparative genomic approach.
Phylum | Regulog | TF regulons (studied genomes) | TFBSs | Logo |
---|---|---|---|---|
Proteobacteria | PhnF - Burkholderia | 4 (8) | 15 | ![]() |
Proteobacteria | PhnF - Comamonadaceae | 1 (11) | 2 | ![]() |
Proteobacteria | PhnF - Oceanospirillales/Alteromonadales | 1 (12) | 4 | ![]() |
Proteobacteria | PhnF - Pseudomonadaceae | 3 (8) | 3 | ![]() |
Proteobacteria | PhnF - Psychromonadaceae/Aeromonadales | 1 (6) | 1 | ![]() |
Proteobacteria | PhnF - Rhizobiales | 12 (15) | 24 | ![]() |
Proteobacteria | PhnF - Rhodobacterales | 11 (15) | 23 | ![]() |
Proteobacteria | PhnF - Various betaproteobacteria | 2 (12) | 4 | ![]() |
Proteobacteria/beta | PhnF - Ralstonia | 4 (6) | 8 | ![]() |
Proteobacteria/delta | PhnF - Desulfovibrionales | 2 (10) | 5 | ![]() |
Proteobacteria/gamma | PhnF - Enterobacteriales | 6 (12) | 6 | ![]() |