Regulog PhnF - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Phosphonate utilization
Effector:
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - PhnF
By TF family - GntR/Others
By pathway - Phosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Pseudomonas aeruginosa PAO1	10	1
Pseudomonas entomophila L48
Pseudomonas putida KT2440
Pseudomonas syringae pv. tomato str. DC3000	10	1
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp	10	1
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
phnF	* Pseudomonas aeruginosa PAO1 Site: position = 24 score = 5.18164 sequence = TTGTCTAGACAA Gene: PA3381: Transcriptional regulator for phosphonates utilization, GntR family	Pseudomonas entomophila L48	Pseudomonas putida KT2440	* Pseudomonas syringae pv. tomato str. DC3000 Site: position = 6 score = 5.18164 sequence = TTGTCTAGACAA Gene: PSPTO2558: Transcriptional regulator for phosphonates utilization, GntR family	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = 24 score = 5.18164 sequence = TTGTCTAGACAA Gene: Pmen_2887: Transcriptional regulator for phosphonates utilization, GntR family	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Transcriptional regulator for phosphonates utilization, GntR family
phnG	Pseudomonas aeruginosa PAO1 Gene: PA3380: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2559: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2886: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
phnH	Pseudomonas aeruginosa PAO1 Gene: PA3379: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2560: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2885: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
phnI	Pseudomonas aeruginosa PAO1 Gene: PA3378: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2561: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2884: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
phnJ	Pseudomonas aeruginosa PAO1 Gene: PA3377: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2562: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2883: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
phnK	Pseudomonas aeruginosa PAO1 Gene: PA3376: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2563: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2882: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
phnL	Pseudomonas aeruginosa PAO1 Gene: PA3375: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2564: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2881: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
pnhM	Pseudomonas aeruginosa PAO1 Gene: PA3374: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2565: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2880: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
phnN	Pseudomonas aeruginosa PAO1 Gene: PA3373: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2566: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2879: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
phnP	Pseudomonas aeruginosa PAO1 Gene: PA3372: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000 Gene: PSPTO2567: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_2878: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnF - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --