Regulog PhnF - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Phosphonate utilization |
| Effector: | |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - PhnF
- By TF family - GntR/Others
- By pathway - Phosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 10 | 1 |
| Pseudomonas entomophila L48 | ||
| Pseudomonas putida KT2440 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 10 | 1 |
| Pseudomonas fluorescens Pf-5 | ||
| Pseudomonas mendocina ymp | 10 | 1 |
| Pseudomonas stutzeri A1501 | ||
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| phnF |
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Pseudomonas aeruginosa PAO1 Site: position = 24 score = 5.18164 sequence = TTGTCTAGACAA Gene: PA3381: Transcriptional regulator for phosphonates utilization, GntR family |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = 6 score = 5.18164 sequence = TTGTCTAGACAA Gene: PSPTO2558: Transcriptional regulator for phosphonates utilization, GntR family |
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Pseudomonas mendocina ymp Site: position = 24 score = 5.18164 sequence = TTGTCTAGACAA Gene: Pmen_2887: Transcriptional regulator for phosphonates utilization, GntR family |
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Transcriptional regulator for phosphonates utilization, GntR family |
| phnG |
Gene: PA3380: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
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Gene: PSPTO2559: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
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Gene: Pmen_2886: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
| phnH |
Gene: PA3379: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
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Gene: PSPTO2560: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
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Gene: Pmen_2885: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
| phnI |
Gene: PA3378: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
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Gene: PSPTO2561: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
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Gene: Pmen_2884: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
| phnJ |
Gene: PA3377: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
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Gene: PSPTO2562: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
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Gene: Pmen_2883: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
| phnK |
Gene: PA3376: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
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Gene: PSPTO2563: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
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Gene: Pmen_2882: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
| phnL |
Gene: PA3375: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
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Gene: PSPTO2564: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
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Gene: Pmen_2881: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
| pnhM |
Gene: PA3374: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
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Gene: PSPTO2565: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
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Gene: Pmen_2880: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
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Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
| phnN |
Gene: PA3373: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
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Gene: PSPTO2566: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
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Gene: Pmen_2879: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
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Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
| phnP |
Gene: PA3372: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-) |
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Gene: PSPTO2567: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-) |
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Gene: Pmen_2878: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-) |
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Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |