Regulog PhnF - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Phosphonate utilization
Effector:
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By trascription factor - PhnF
By taxonomy - Various betaproteobacteria
By TF family - GntR/Others
By pathway - Phosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Azoarcus sp. EbN1
Thauera sp. MZ1T
Dechloromonas aromatica RCB
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Thiobacillus denitrificans
Chromobacterium violaceum ATCC 12472	10	2
Neisseria meningitidis MC58
Laribacter hongkongensis HLHK9	9	2
Methylobacillus flagellatus KT
Methylotenera mobilis JLW8
Methylophilales bacterium HTCC2181

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
phnF	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	* Chromobacterium violaceum ATCC 12472 Site: position = -121 score = 6.23744 sequence = TATAAACGTATAGACGTATCCA Gene: CV1847: Transcriptional regulator for phosphonate utilization, GntR family	Neisseria meningitidis MC58	* Laribacter hongkongensis HLHK9 Site: position = -114 score = 6.23744 sequence = TATAAACGTATAGACGTATCCA Gene: LHK_01588: Transcriptional regulator for phosphonate utilization, GntR family	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Transcriptional regulator for phosphonate utilization, GntR family
rcsF	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV1848: Protein RcsF involved in phosphonates utilization	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Protein RcsF involved in phosphonates utilization
phnN	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV1849: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9 Gene: LHK_01589: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)

CRON 2.
phnG	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	* Chromobacterium violaceum ATCC 12472 Site: position = -51 score = 6.23744 sequence = TGGATACGTCTATACGTTTATA Gene: CV1846: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Neisseria meningitidis MC58	* Laribacter hongkongensis HLHK9 Site: position = -48 score = 6.23744 sequence = TGGATACGTCTATACGTTTATA Gene: LHK_01587: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
phnH	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV1845: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9 Gene: LHK_01586: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
phnI	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV1844: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9 Gene: LHK_01585: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
phnJ	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV1843: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9 Gene: LHK_01584: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
phnK	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV1842: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9 Gene: LHK_01583: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
phnL	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV1841: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9 Gene: LHK_01582: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
phnM	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472 Gene: CV1840: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9 Gene: LHK_01581: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnF - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --