Regulog PhnF - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Phosphonate utilization |
| Effector: | |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PhnF
- By taxonomy - Various betaproteobacteria
- By TF family - GntR/Others
- By pathway - Phosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | ||
| Thauera sp. MZ1T | ||
| Dechloromonas aromatica RCB | ||
| Nitrosomonas europaea ATCC 19718 | ||
| Nitrosospira multiformis ATCC 25196 | ||
| Thiobacillus denitrificans | ||
| Chromobacterium violaceum ATCC 12472 | 10 | 2 |
| Neisseria meningitidis MC58 | ||
| Laribacter hongkongensis HLHK9 | 9 | 2 |
| Methylobacillus flagellatus KT | ||
| Methylotenera mobilis JLW8 | ||
| Methylophilales bacterium HTCC2181 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| phnF |
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Chromobacterium violaceum ATCC 12472 Site: position = -121 score = 6.23744 sequence = TATAAACGTATAGACGTATCCA Gene: CV1847: Transcriptional regulator for phosphonate utilization, GntR family |
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Laribacter hongkongensis HLHK9 Site: position = -114 score = 6.23744 sequence = TATAAACGTATAGACGTATCCA Gene: LHK_01588: Transcriptional regulator for phosphonate utilization, GntR family |
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Transcriptional regulator for phosphonate utilization, GntR family |
| rcsF |
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Gene: CV1848: Protein RcsF involved in phosphonates utilization |
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Protein RcsF involved in phosphonates utilization |
| phnN |
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Gene: CV1849: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
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Gene: LHK_01589: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
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Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming) |
| CRON 2. | |||||||||||||
| phnG |
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Chromobacterium violaceum ATCC 12472 Site: position = -51 score = 6.23744 sequence = TGGATACGTCTATACGTTTATA Gene: CV1846: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
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Laribacter hongkongensis HLHK9 Site: position = -48 score = 6.23744 sequence = TGGATACGTCTATACGTTTATA Gene: LHK_01587: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG |
| phnH |
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Gene: CV1845: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
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Gene: LHK_01586: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH |
| phnI |
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Gene: CV1844: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
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Gene: LHK_01585: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI |
| phnJ |
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Gene: CV1843: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
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Gene: LHK_01584: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ |
| phnK |
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Gene: CV1842: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
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Gene: LHK_01583: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK |
| phnL |
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Gene: CV1841: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
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Gene: LHK_01582: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
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Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL |
| phnM |
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Gene: CV1840: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
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Gene: LHK_01581: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
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Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |