Regulog PhnF - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Phosphonate utilization
Effector:
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - PhnF
By TF family - GntR/Others
By pathway - Phosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Hahella chejuensis KCTC 2396
Marinobacter aqueolei	26	2
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297
Alcanivorax borkumensis SK2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
PhnF	Hahella chejuensis KCTC 2396	2 Marinobacter aqueolei* Site: position = -10 score = 4.52217 sequence = TTGTATAGACAT Gene: Maqu_4033: phosphonates metabolism transcriptional regulator PhnF Site: position = -10 score = 4.52217 sequence = TTGTATAGACAT Gene: Maqu_0213: phosphonates metabolism transcriptional regulator PhnF	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	phosphonates metabolism transcriptional regulator PhnF
phnD	Hahella chejuensis KCTC 2396	3 Marinobacter aqueolei Gene: Maqu_4034: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) Gene: Maqu_0214: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) Gene: Maqu_3254: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Marinobacter sp. ELB17 Gene: MELB17_10468: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)
phnC	Hahella chejuensis KCTC 2396	2 Marinobacter aqueolei Gene: Maqu_4035: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) Gene: Maqu_0215: Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)
phnE	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei Gene: Maqu_2287: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) Gene: Maqu_4036: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) Gene: Maqu_4151: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) Gene: Maqu_0216: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	Marinobacter sp. ELB17 Gene: MELB17_10463: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)
phnG	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei* Gene: Maqu_2289: putative phosphonate metabolism protein PhnG; K06166 PhnG protein Site: position = -35 score = 4.39031 sequence = ATGTATAGACAT Gene: Maqu_4037: putative phosphonate metabolism protein PhnG; K06166 PhnG protein Gene: Maqu_4149: putative phosphonate metabolism protein PhnG; K06166 PhnG protein Site: position = -35 score = 4.39031 sequence = ATGTATAGACAT Gene: Maqu_0217: putative phosphonate metabolism protein PhnG; K06166 PhnG protein	Marinobacter sp. ELB17 Gene: MELB17_10458: putative phosphonate metabolism protein PhnG; K06166 PhnG protein	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	putative phosphonate metabolism protein PhnG; K06166 PhnG protein
phnH	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei Gene: Maqu_2290: carbon-phosphorus lyase complex subunit phnH Gene: Maqu_4038: carbon-phosphorus lyase complex subunit phnH Gene: Maqu_4148: carbon-phosphorus lyase complex subunit phnH Gene: Maqu_0218: carbon-phosphorus lyase complex subunit phnH	Marinobacter sp. ELB17 Gene: MELB17_10453: carbon-phosphorus lyase complex subunit phnH	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	carbon-phosphorus lyase complex subunit phnH
phnI	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei Gene: Maqu_4039: phosphonate metabolism protein PhnI Gene: Maqu_4147: phosphonate metabolism protein PhnI Gene: Maqu_2291: phosphonate metabolism protein PhnI Gene: Maqu_0219: phosphonate metabolism protein PhnI	Marinobacter sp. ELB17 Gene: MELB17_10448: phosphonate metabolism protein PhnI	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	phosphonate metabolism protein PhnI
phnJ	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei Gene: Maqu_0220: carbon-phosphorus lyase complex subunit phnJ Gene: Maqu_4040: carbon-phosphorus lyase complex subunit phnJ Gene: Maqu_2292: carbon-phosphorus lyase complex subunit phnJ Gene: Maqu_4146: carbon-phosphorus lyase complex subunit phnJ	Marinobacter sp. ELB17 Gene: MELB17_10443: carbon-phosphorus lyase complex subunit phnJ	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	carbon-phosphorus lyase complex subunit phnJ
phnK	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei Gene: Maqu_0221: Phosphonates transport ATP-binding protein PhnK Gene: Maqu_4145: Phosphonates transport ATP-binding protein PhnK Gene: Maqu_4041: Phosphonates transport ATP-binding protein PhnK Gene: Maqu_2293: Phosphonates transport ATP-binding protein PhnK	Marinobacter sp. ELB17 Gene: MELB17_10438: Phosphonates transport ATP-binding protein PhnK	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Phosphonates transport ATP-binding protein PhnK
phnL	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei Gene: Maqu_0222: Phosphonates transport ATP-binding protein PhnL Gene: Maqu_4144: Phosphonates transport ATP-binding protein PhnL Gene: Maqu_4042: Phosphonates transport ATP-binding protein PhnL Gene: Maqu_2294: Phosphonates transport ATP-binding protein PhnL	Marinobacter sp. ELB17 Gene: MELB17_10433: Phosphonates transport ATP-binding protein PhnL	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Phosphonates transport ATP-binding protein PhnL
phnM	Hahella chejuensis KCTC 2396	2 Marinobacter aqueolei Gene: Maqu_4043: Metal-dependent hydrolase involved in phosphonate metabolism Gene: Maqu_0223: Metal-dependent hydrolase involved in phosphonate metabolism	Marinobacter sp. ELB17 Gene: MELB17_10428: Metal-dependent hydrolase involved in phosphonate metabolism	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Metal-dependent hydrolase involved in phosphonate metabolism
phnN	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei Gene: Maqu_0224: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8) Gene: Maqu_4142: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8) Gene: Maqu_4044: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8) Gene: Maqu_2296: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)	Marinobacter sp. ELB17 Gene: MELB17_10423: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)	Oceanobacter sp. RED65	Oceanospirillum sp. MED92 Gene: MED92_11564: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)
phnP	Hahella chejuensis KCTC 2396	4 Marinobacter aqueolei Gene: Maqu_0225: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein Gene: Maqu_4141: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein Gene: Maqu_4045: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein Gene: Maqu_2297: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein	Marinobacter sp. ELB17 Gene: MELB17_10478: Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnF - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --