Regulog PhnF - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Phosphonate utilization
Effector:
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - PhnF
By TF family - GntR/Others
By pathway - Phosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	11	1
Salmonella typhimurium LT2
Citrobacter koseri ATCC BAA-895	10	1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	10	1
Enterobacter sp. 638	11	1
Erwinia amylovora ATCC 49946
Yersinia pestis KIM	6	1
Serratia proteamaculans 568	11	1
Erwinia carotovora subsp. atroseptica SCRI1043
Edwardsiella tarda EIB202
Proteus mirabilis HI4320
Photorhabdus luminescens subsp. laumondii TTO1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
phnF	* Escherichia coli str. K-12 substr. MG1655 Site: position = 6 score = 5.04524 sequence = TTGTCTACACAT Gene: b4102: Transcriptional regulator for phosphonate utilization, GntR family	Salmonella typhimurium LT2	* Citrobacter koseri ATCC BAA-895 Site: position = 12 score = 5.04524 sequence = TTGTCTACACAT Gene: CKO_03768: Transcriptional regulator for phosphonate utilization, GntR family	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = 12 score = 4.54501 sequence = CTGTCCAGACAT Gene: KPN_04500: Transcriptional regulator for phosphonate utilization, GntR family	* Enterobacter sp. 638 Site: position = 6 score = 4.86563 sequence = TTATCCAGACAT Gene: Ent638_0306: Transcriptional regulator for phosphonate utilization, GntR family	Erwinia amylovora ATCC 49946	* Yersinia pestis KIM Site: position = 6 score = 4.86692 sequence = TTATCTAGACCA Gene: y0730: Transcriptional regulator for phosphonate utilization, GntR family	* Serratia proteamaculans 568 Site: position = 9 score = 5.18164 sequence = TTATCTAGACAT Gene: Spro_0522: Transcriptional regulator for phosphonate utilization, GntR family	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Transcriptional regulator for phosphonate utilization, GntR family
phnG	Escherichia coli str. K-12 substr. MG1655 Gene: b4101: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03769: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04499: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Enterobacter sp. 638 Gene: Ent638_0305: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0729: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Serratia proteamaculans 568 Gene: Spro_0521: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0490: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnG
phnH	Escherichia coli str. K-12 substr. MG1655 Gene: b4100: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03770: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04498: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Enterobacter sp. 638 Gene: Ent638_0304: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0728: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Serratia proteamaculans 568 Gene: Spro_0520: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0491: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnH
phnI	Escherichia coli str. K-12 substr. MG1655 Gene: b4099: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03771: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04497: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Enterobacter sp. 638 Gene: Ent638_0303: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0727: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Serratia proteamaculans 568 Gene: Spro_0519: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0492: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnI
phnJ	Escherichia coli str. K-12 substr. MG1655 Gene: b4098: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03772: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04496: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Enterobacter sp. 638 Gene: Ent638_0302: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0726: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Serratia proteamaculans 568 Gene: Spro_0518: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0493: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnJ
phnK	Escherichia coli str. K-12 substr. MG1655 Gene: b4097: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03773: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04495: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Enterobacter sp. 638 Gene: Ent638_0301: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0725: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Serratia proteamaculans 568 Gene: Spro_0517: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0494: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnK
phnL	Escherichia coli str. K-12 substr. MG1655 Gene: b4096: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03774: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04494: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Enterobacter sp. 638 Gene: Ent638_0300: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0723: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Serratia proteamaculans 568 Gene: Spro_0516: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0495: Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Methylphosphonate degradation complex, carbon-phosphorus lyase subunit PhnL
phnM	Escherichia coli str. K-12 substr. MG1655 Gene: b4095: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03775: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04493: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Enterobacter sp. 638 Gene: Ent638_0299: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0722: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Serratia proteamaculans 568 Gene: Spro_0515: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0496: Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Alpha-D-ribose-1-methylphosphonate-5-triphosphate hydrolase
phnN	Escherichia coli str. K-12 substr. MG1655 Gene: b4094: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03776: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04492: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Enterobacter sp. 638 Gene: Ent638_0298: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0721: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Serratia proteamaculans 568 Gene: Spro_0514: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0497: Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming)
phnO	Escherichia coli str. K-12 substr. MG1655 Gene: b4093: Aminoalkylphosphonic acid N-acetyltransferase	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_03777: Aminoalkylphosphonic acid N-acetyltransferase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_0297: Aminoalkylphosphonic acid N-acetyltransferase	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_0513: Aminoalkylphosphonic acid N-acetyltransferase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Aminoalkylphosphonic acid N-acetyltransferase
phnP	Escherichia coli str. K-12 substr. MG1655 Gene: b4092: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04491: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Enterobacter sp. 638 Gene: Ent638_0296: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0720: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Serratia proteamaculans 568 Gene: Spro_0512: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0498: Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Phosphoribosyl 1,2-cyclic phosphodiesterase (EC 3.1.4.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnF - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --