Regulog CooA - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Carbon monoxide utilization |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - CRP
- By pathway - Carbon monoxide utilization
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 2 | 1 |
| Desulfovibrio vulgaris str. Miyazaki F | 2 | 1 |
| Desulfovibrio desulfuricans G20 | 2 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 2 | 1 |
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 2 | 1 |
| Desulfovibrio magneticus RS-1 | 2 | 1 |
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 2 | 1 |
| Desulfohalobium retbaense DSM 5692 | 2 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| cooS |
*
Desulfovibrio vulgaris Hildenborough Site: position = -186 score = 6.19797 sequence = TGTCGGCTAGCCGACA Gene: DVU2098: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -181 score = 6.19797 sequence = TGTCGGCTAGCCGACA Gene: DvMF_2233: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
*
Desulfovibrio desulfuricans G20 Site: position = -112 score = 6.14296 sequence = TGTCAGCCAGCCGACA Gene: Dde_3028: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -117 score = 6.14296 sequence = TGTCAGCCAGCCGACA Gene: Ddes_0382: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
|
*
Desulfovibrio salexigens DSM 2638 Site: position = -107 score = 5.04885 sequence = TGTCGGGTACCCGACA Gene: Desal_2508: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
*
Desulfovibrio magneticus RS-1 Site: position = -98 score = 5.54732 sequence = TGTCGGCAATCTGACA Gene: DMR_25780: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
|
*
Desulfomicrobium baculatum DSM 4028 Site: position = -129 score = 5.81856 sequence = TGTCAGCTAGGCGACA Gene: Dbac_0934: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
*
Desulfohalobium retbaense DSM 5692 Site: position = -92 score = 5.96991 sequence = TGTCAGCCAGCTGACA Gene: Dret_1234: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2) |
| cooC |
Gene: DVU2099: CO dehydrogenase accessory protein CooC (nickel insertion) |
Gene: DvMF_2232: CO dehydrogenase accessory protein CooC (nickel insertion) |
Gene: Dde_3029: CO dehydrogenase accessory protein CooC (nickel insertion) |
Gene: Ddes_0381: CO dehydrogenase accessory protein CooC (nickel insertion) |
|
Gene: Desal_2507: CO dehydrogenase accessory protein CooC (nickel insertion) |
Gene: DMR_25790: CO dehydrogenase accessory protein CooC (nickel insertion) |
|
Gene: Dbac_0933: CO dehydrogenase accessory protein CooC (nickel insertion) |
Gene: Dret_1235: CO dehydrogenase accessory protein CooC (nickel insertion) |
CO dehydrogenase accessory protein CooC (nickel insertion) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |