Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog CooA - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Carbon monoxide utilization
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 2 1
Desulfovibrio vulgaris str. Miyazaki F 2 1
Desulfovibrio desulfuricans G20 2 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 2 1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 2 1
Desulfovibrio magneticus RS-1 2 1
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028 2 1
Desulfohalobium retbaense DSM 5692 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
cooS
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -186
score = 6.19797
sequence = TGTCGGCTAGCCGACA

Gene: DVU2098: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -181
score = 6.19797
sequence = TGTCGGCTAGCCGACA

Gene: DvMF_2233: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
*
Desulfovibrio desulfuricans G20

Site:
position = -112
score = 6.14296
sequence = TGTCAGCCAGCCGACA

Gene: Dde_3028: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Site:
position = -117
score = 6.14296
sequence = TGTCAGCCAGCCGACA

Gene: Ddes_0382: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -107
score = 5.04885
sequence = TGTCGGGTACCCGACA

Gene: Desal_2508: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
*
Desulfovibrio magneticus RS-1

Site:
position = -98
score = 5.54732
sequence = TGTCGGCAATCTGACA

Gene: DMR_25780: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
 
Lawsonia intracellularis PHE/MN1-00
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -129
score = 5.81856
sequence = TGTCAGCTAGGCGACA

Gene: Dbac_0934: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
*
Desulfohalobium retbaense DSM 5692

Site:
position = -92
score = 5.96991
sequence = TGTCAGCCAGCTGACA

Gene: Dret_1234: Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
Carbon monoxide dehydrogenase CooS subunit (EC 1.2.99.2)
cooC
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2099: CO dehydrogenase accessory protein CooC (nickel insertion)
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_2232: CO dehydrogenase accessory protein CooC (nickel insertion)
 
Desulfovibrio desulfuricans G20

Gene: Dde_3029: CO dehydrogenase accessory protein CooC (nickel insertion)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0381: CO dehydrogenase accessory protein CooC (nickel insertion)
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2507: CO dehydrogenase accessory protein CooC (nickel insertion)
 
Desulfovibrio magneticus RS-1

Gene: DMR_25790: CO dehydrogenase accessory protein CooC (nickel insertion)
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_0933: CO dehydrogenase accessory protein CooC (nickel insertion)
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1235: CO dehydrogenase accessory protein CooC (nickel insertion)
CO dehydrogenase accessory protein CooC (nickel insertion)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise