Regulog DVU0621 - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
- By effector - Nitrite
- By pathway - Nitrate and nitrite respiration
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | ||
| Desulfomicrobium baculatum DSM 4028 | 4 | 1 |
| Desulfovibrio desulfuricans G20 | 9 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 8 | 2 |
| Desulfovibrio magneticus RS-1 | ||
| Desulfovibrio piger ATCC 29098 | 2 | 1 |
| Desulfovibrio salexigens DSM 2638 | ||
| Desulfovibrio vulgaris Hildenborough | 11 | 2 |
| Desulfovibrio vulgaris str. Miyazaki F | 6 | 2 |
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| Ddes_0614 |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -228 score = 5.50796 sequence = GTCATATTTTTATGAA Site: position = -194 score = 4.66495 sequence = GTGATGTTTTTCTCAA Site: position = -248 score = 5.28931 sequence = GTCATGTTTTTATGAA Gene: Ddes_0614: Functional role page for Cytochrome c-type protein TorY |
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Functional role page for Cytochrome c-type protein TorY |
| Ddes_0615 |
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Gene: Ddes_0615: hypothetical protein |
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hypothetical protein |
| Ddes_0616 |
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Gene: Ddes_0616: nitrate reductase |
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nitrate reductase |
| Ddes_0617 |
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Gene: Ddes_0617: hypothetical protein |
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hypothetical protein |
| Ddes_0618 |
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Gene: Ddes_0618: MauM/NapG family ferredoxin-type protein |
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MauM/NapG family ferredoxin-type protein |
| Ddes_0619 |
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Gene: Ddes_0619: Polyferredoxin NapH (periplasmic nitrate reductase) |
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Polyferredoxin NapH (periplasmic nitrate reductase) |
| CRON 2. | |||||||||||
| nrfH |
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Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -315 score = 5.74514 sequence = GTCATAATTTTCTGAA Site: position = -295 score = 5.52649 sequence = GTCATGTTTATCTGAA Gene: Ddes_0082: Cytochrome c nitrite reductase, small subunit NrfH |
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Desulfovibrio piger ATCC 29098 Site: position = -250 score = 5.77837 sequence = GTCAGATTTTTCGGAA Site: position = -229 score = 5.62819 sequence = GTCTTTTTTTTCTGAA Gene: DESPIG_01831: Cytochrome c nitrite reductase, small subunit NrfH |
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Desulfovibrio vulgaris Hildenborough Site: position = -322 score = 6.02896 sequence = GTCATCTTTTTCTGTC Site: position = -302 score = 6.20546 sequence = GTCATCTTTTTCTGAC Gene: DVU0624: Cytochrome c nitrite reductase, small subunit NrfH |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -277 score = 6.06219 sequence = GTCAGATTTTTCTGTC Gene: DvMF_1491: Cytochrome c nitrite reductase, small subunit NrfH |
Gene: LI1001: Cytochrome c nitrite reductase, small subunit NrfH |
Cytochrome c nitrite reductase, small subunit NrfH |
| nrfA |
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Gene: Ddes_0081: Cytochrome c nitrite reductase, catalytic subunit NrfA |
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Gene: DESPIG_01830: Cytochrome c nitrite reductase, catalytic subunit NrfA |
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Gene: DVU0625: Cytochrome c nitrite reductase, catalytic subunit NrfA |
Gene: DvMF_1490: Cytochrome c nitrite reductase, catalytic subunit NrfA |
Gene: LI1002: Cytochrome c nitrite reductase, catalytic subunit NrfA |
Cytochrome c nitrite reductase, catalytic subunit NrfA |
| CRON 3. | |||||||||||
| por |
Gene: Dret_1036: pyruvate-ferredoxin oxidoreductase |
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Desulfomicrobium baculatum DSM 4028 Site: position = -188 score = 5.09507 sequence = GTCTTTTTTTTCAGAC Gene: Dbac_1044: pyruvate-ferredoxin oxidoreductase |
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Desulfovibrio desulfuricans G20 Site: position = -387 score = 4.77428 sequence = GTCCTGTTTTTCAGAC Site: position = -261 score = 4.87598 sequence = GTCCTTTTTTTCAGAC Site: position = -362 score = 5.02616 sequence = GTCCGCTTTTTCAGAC Gene: Dde_3237: pyruvate-ferredoxin oxidoreductase |
Gene: Ddes_0298: pyruvate-ferredoxin oxidoreductase |
Gene: DMR_20070: pyruvate-ferredoxin oxidoreductase |
Gene: DESPIG_02167: pyruvate-ferredoxin oxidoreductase |
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Desulfovibrio vulgaris Hildenborough Site: position = -389 score = 4.4018 sequence = ATCCGCTTTTTCAGAC Site: position = -350 score = 4.51527 sequence = GTCCACTTTTTCAGAC Gene: DVU3025: pyruvate-ferredoxin oxidoreductase |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -466 score = 4.63943 sequence = GTCCGGATTTTCGGAC Gene: DvMF_1860: pyruvate-ferredoxin oxidoreductase |
Gene: LI0278: pyruvate-ferredoxin oxidoreductase |
pyruvate-ferredoxin oxidoreductase |
| lldP |
Gene: Dret_1039: L-lactate permease |
Gene: Dbac_1045: L-lactate permease |
Gene: Dde_3238: L-lactate permease |
Gene: Ddes_2169: L-lactate permease |
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Gene: Desal_2573: L-lactate permease |
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Desulfovibrio vulgaris Hildenborough Gene: DVU3026: L-lactate permease Gene: DVU2451: L-lactate permease |
Gene: DvMF_1861: L-lactate permease |
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L-lactate permease |
| glcD |
Gene: Dret_1038: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Dbac_1046: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Dde_3239: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Ddes_1994: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: DMR_20060: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: DESPIG_02393: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: Desal_2572: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: DVU3027: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: DvMF_1862: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
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Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
| glcF |
Gene: Dret_1037: Glycolate oxidase iron-sulfur subunit GlcF |
Gene: Dbac_1047: Glycolate oxidase iron-sulfur subunit GlcF |
Gene: Dde_3240: Glycolate oxidase iron-sulfur subunit GlcF |
Gene: Ddes_1993: Glycolate oxidase iron-sulfur subunit GlcF |
Gene: DMR_20050: Glycolate oxidase iron-sulfur subunit GlcF |
Gene: DESPIG_02394: Glycolate oxidase iron-sulfur subunit GlcF |
Gene: Desal_2571: Glycolate oxidase iron-sulfur subunit GlcF |
Gene: DVU3028: Glycolate oxidase iron-sulfur subunit GlcF |
Gene: DvMF_1863: Glycolate oxidase iron-sulfur subunit GlcF |
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Glycolate oxidase iron-sulfur subunit GlcF |
| pta |
Gene: Dret_1035: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: Dbac_1048: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: Dde_3241: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: Ddes_0297: Phosphate acetyltransferase (EC 2.3.1.8) |
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Gene: DESPIG_02164: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: Desal_2570: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: DVU3029: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: DvMF_1864: Phosphate acetyltransferase (EC 2.3.1.8) |
Gene: LI0279: Phosphate acetyltransferase (EC 2.3.1.8) |
Phosphate acetyltransferase (EC 2.3.1.8) |
| ackA |
Gene: Dret_1034: Acetate kinase (EC 2.7.2.1) |
Gene: Dbac_1049: Acetate kinase (EC 2.7.2.1) |
Gene: Dde_3242: Acetate kinase (EC 2.7.2.1) |
Gene: Ddes_0296: Acetate kinase (EC 2.7.2.1) |
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Gene: DESPIG_02163: Acetate kinase (EC 2.7.2.1) |
Gene: Desal_2569: Acetate kinase (EC 2.7.2.1) |
Gene: DVU3030: Acetate kinase (EC 2.7.2.1) |
Gene: DvMF_1865: Acetate kinase (EC 2.7.2.1) |
Gene: LI0280: Acetate kinase (EC 2.7.2.1) |
Acetate kinase (EC 2.7.2.1) |
| DVU3031 |
Gene: Dret_1033: BioD-like N-terminal domain of phosphotransacetylase |
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Gene: Dde_3243: BioD-like N-terminal domain of phosphotransacetylase |
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Gene: DMR_20030: BioD-like N-terminal domain of phosphotransacetylase |
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Gene: Desal_3044: BioD-like N-terminal domain of phosphotransacetylase |
Gene: DVU3031: BioD-like N-terminal domain of phosphotransacetylase |
Gene: DvMF_1866: BioD-like N-terminal domain of phosphotransacetylase |
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BioD-like N-terminal domain of phosphotransacetylase |
| lldG |
Gene: Dret_1032: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
Gene: Dbac_1728: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
Gene: Dde_3244: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
Gene: Ddes_1992: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
Gene: DMR_20010: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
Gene: DESPIG_02395: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
Gene: Desal_2568: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
Gene: DVU3032: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
Gene: DvMF_1867: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
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Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG |
| lldEF |
Gene: Dret_1031: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Gene: Dbac_1729: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Gene: Dde_3245: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Gene: Ddes_1991: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Gene: DMR_20000: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Gene: DESPIG_02396: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Gene: Desal_2567: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Gene: DVU3033: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Gene: DvMF_1868: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
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Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |