Regulog DVU0621 - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:
Biological process:	Nitrate and nitrite respiration
Effector:	Nitrite
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Fis
By effector - Nitrite
By pathway - Nitrate and nitrite respiration

Statistics of regulated genes
Genome	Genes	Operons
Desulfohalobium retbaense DSM 5692
Desulfomicrobium baculatum DSM 4028	4	1
Desulfovibrio desulfuricans G20	9	1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	8	2
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098	2	1
Desulfovibrio salexigens DSM 2638
Desulfovibrio vulgaris Hildenborough	11	2
Desulfovibrio vulgaris str. Miyazaki F	6	2
Lawsonia intracellularis PHE/MN1-00

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
Ddes_0614	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -228 score = 5.50796 sequence = GTCATATTTTTATGAA Site: position = -194 score = 4.66495 sequence = GTGATGTTTTTCTCAA Site: position = -248 score = 5.28931 sequence = GTCATGTTTTTATGAA Gene: Ddes_0614: Functional role page for Cytochrome c-type protein TorY	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Functional role page for Cytochrome c-type protein TorY
Ddes_0615	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0615: hypothetical protein	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	hypothetical protein
Ddes_0616	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0616: nitrate reductase	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	nitrate reductase
Ddes_0617	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0617: hypothetical protein	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	hypothetical protein
Ddes_0618	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0618: MauM/NapG family ferredoxin-type protein	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	MauM/NapG family ferredoxin-type protein
Ddes_0619	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0619: Polyferredoxin NapH (periplasmic nitrate reductase)	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Lawsonia intracellularis PHE/MN1-00	Polyferredoxin NapH (periplasmic nitrate reductase)

CRON 2.
nrfH	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -315 score = 5.74514 sequence = GTCATAATTTTCTGAA Site: position = -295 score = 5.52649 sequence = GTCATGTTTATCTGAA Gene: Ddes_0082: Cytochrome c nitrite reductase, small subunit NrfH	Desulfovibrio magneticus RS-1	* Desulfovibrio piger ATCC 29098 Site: position = -250 score = 5.77837 sequence = GTCAGATTTTTCGGAA Site: position = -229 score = 5.62819 sequence = GTCTTTTTTTTCTGAA Gene: DESPIG_01831: Cytochrome c nitrite reductase, small subunit NrfH	Desulfovibrio salexigens DSM 2638	* Desulfovibrio vulgaris Hildenborough Site: position = -322 score = 6.02896 sequence = GTCATCTTTTTCTGTC Site: position = -302 score = 6.20546 sequence = GTCATCTTTTTCTGAC Gene: DVU0624: Cytochrome c nitrite reductase, small subunit NrfH	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -277 score = 6.06219 sequence = GTCAGATTTTTCTGTC Gene: DvMF_1491: Cytochrome c nitrite reductase, small subunit NrfH	Lawsonia intracellularis PHE/MN1-00 Gene: LI1001: Cytochrome c nitrite reductase, small subunit NrfH	Cytochrome c nitrite reductase, small subunit NrfH
nrfA	Desulfohalobium retbaense DSM 5692	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0081: Cytochrome c nitrite reductase, catalytic subunit NrfA	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_01830: Cytochrome c nitrite reductase, catalytic subunit NrfA	Desulfovibrio salexigens DSM 2638	Desulfovibrio vulgaris Hildenborough Gene: DVU0625: Cytochrome c nitrite reductase, catalytic subunit NrfA	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1490: Cytochrome c nitrite reductase, catalytic subunit NrfA	Lawsonia intracellularis PHE/MN1-00 Gene: LI1002: Cytochrome c nitrite reductase, catalytic subunit NrfA	Cytochrome c nitrite reductase, catalytic subunit NrfA

CRON 3.
por	Desulfohalobium retbaense DSM 5692 Gene: Dret_1036: pyruvate-ferredoxin oxidoreductase	* Desulfomicrobium baculatum DSM 4028 Site: position = -188 score = 5.09507 sequence = GTCTTTTTTTTCAGAC Gene: Dbac_1044: pyruvate-ferredoxin oxidoreductase	* Desulfovibrio desulfuricans G20 Site: position = -387 score = 4.77428 sequence = GTCCTGTTTTTCAGAC Site: position = -261 score = 4.87598 sequence = GTCCTTTTTTTCAGAC Site: position = -362 score = 5.02616 sequence = GTCCGCTTTTTCAGAC Gene: Dde_3237: pyruvate-ferredoxin oxidoreductase	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0298: pyruvate-ferredoxin oxidoreductase	Desulfovibrio magneticus RS-1 Gene: DMR_20070: pyruvate-ferredoxin oxidoreductase	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02167: pyruvate-ferredoxin oxidoreductase	Desulfovibrio salexigens DSM 2638	* Desulfovibrio vulgaris Hildenborough Site: position = -389 score = 4.4018 sequence = ATCCGCTTTTTCAGAC Site: position = -350 score = 4.51527 sequence = GTCCACTTTTTCAGAC Gene: DVU3025: pyruvate-ferredoxin oxidoreductase	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -466 score = 4.63943 sequence = GTCCGGATTTTCGGAC Gene: DvMF_1860: pyruvate-ferredoxin oxidoreductase	Lawsonia intracellularis PHE/MN1-00 Gene: LI0278: pyruvate-ferredoxin oxidoreductase	pyruvate-ferredoxin oxidoreductase
lldP	Desulfohalobium retbaense DSM 5692 Gene: Dret_1039: L-lactate permease	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1045: L-lactate permease	Desulfovibrio desulfuricans G20 Gene: Dde_3238: L-lactate permease	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2169: L-lactate permease	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_2573: L-lactate permease	2 Desulfovibrio vulgaris Hildenborough Gene: DVU3026: L-lactate permease Gene: DVU2451: L-lactate permease	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1861: L-lactate permease	Lawsonia intracellularis PHE/MN1-00	L-lactate permease
glcD	Desulfohalobium retbaense DSM 5692 Gene: Dret_1038: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1046: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio desulfuricans G20 Gene: Dde_3239: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1994: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio magneticus RS-1 Gene: DMR_20060: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02393: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio salexigens DSM 2638 Gene: Desal_2572: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio vulgaris Hildenborough Gene: DVU3027: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1862: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Lawsonia intracellularis PHE/MN1-00	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcF	Desulfohalobium retbaense DSM 5692 Gene: Dret_1037: Glycolate oxidase iron-sulfur subunit GlcF	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1047: Glycolate oxidase iron-sulfur subunit GlcF	Desulfovibrio desulfuricans G20 Gene: Dde_3240: Glycolate oxidase iron-sulfur subunit GlcF	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1993: Glycolate oxidase iron-sulfur subunit GlcF	Desulfovibrio magneticus RS-1 Gene: DMR_20050: Glycolate oxidase iron-sulfur subunit GlcF	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02394: Glycolate oxidase iron-sulfur subunit GlcF	Desulfovibrio salexigens DSM 2638 Gene: Desal_2571: Glycolate oxidase iron-sulfur subunit GlcF	Desulfovibrio vulgaris Hildenborough Gene: DVU3028: Glycolate oxidase iron-sulfur subunit GlcF	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1863: Glycolate oxidase iron-sulfur subunit GlcF	Lawsonia intracellularis PHE/MN1-00	Glycolate oxidase iron-sulfur subunit GlcF
pta	Desulfohalobium retbaense DSM 5692 Gene: Dret_1035: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1048: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio desulfuricans G20 Gene: Dde_3241: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0297: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02164: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio salexigens DSM 2638 Gene: Desal_2570: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio vulgaris Hildenborough Gene: DVU3029: Phosphate acetyltransferase (EC 2.3.1.8)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1864: Phosphate acetyltransferase (EC 2.3.1.8)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0279: Phosphate acetyltransferase (EC 2.3.1.8)	Phosphate acetyltransferase (EC 2.3.1.8)
ackA	Desulfohalobium retbaense DSM 5692 Gene: Dret_1034: Acetate kinase (EC 2.7.2.1)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1049: Acetate kinase (EC 2.7.2.1)	Desulfovibrio desulfuricans G20 Gene: Dde_3242: Acetate kinase (EC 2.7.2.1)	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0296: Acetate kinase (EC 2.7.2.1)	Desulfovibrio magneticus RS-1	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02163: Acetate kinase (EC 2.7.2.1)	Desulfovibrio salexigens DSM 2638 Gene: Desal_2569: Acetate kinase (EC 2.7.2.1)	Desulfovibrio vulgaris Hildenborough Gene: DVU3030: Acetate kinase (EC 2.7.2.1)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1865: Acetate kinase (EC 2.7.2.1)	Lawsonia intracellularis PHE/MN1-00 Gene: LI0280: Acetate kinase (EC 2.7.2.1)	Acetate kinase (EC 2.7.2.1)
DVU3031	Desulfohalobium retbaense DSM 5692 Gene: Dret_1033: BioD-like N-terminal domain of phosphotransacetylase	Desulfomicrobium baculatum DSM 4028	Desulfovibrio desulfuricans G20 Gene: Dde_3243: BioD-like N-terminal domain of phosphotransacetylase	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio magneticus RS-1 Gene: DMR_20030: BioD-like N-terminal domain of phosphotransacetylase	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_3044: BioD-like N-terminal domain of phosphotransacetylase	Desulfovibrio vulgaris Hildenborough Gene: DVU3031: BioD-like N-terminal domain of phosphotransacetylase	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1866: BioD-like N-terminal domain of phosphotransacetylase	Lawsonia intracellularis PHE/MN1-00	BioD-like N-terminal domain of phosphotransacetylase
lldG	Desulfohalobium retbaense DSM 5692 Gene: Dret_1032: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1728: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Desulfovibrio desulfuricans G20 Gene: Dde_3244: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1992: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Desulfovibrio magneticus RS-1 Gene: DMR_20010: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02395: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Desulfovibrio salexigens DSM 2638 Gene: Desal_2568: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Desulfovibrio vulgaris Hildenborough Gene: DVU3032: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1867: Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG	Lawsonia intracellularis PHE/MN1-00	Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG
lldEF	Desulfohalobium retbaense DSM 5692 Gene: Dret_1031: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_1729: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Desulfovibrio desulfuricans G20 Gene: Dde_3245: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1991: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Desulfovibrio magneticus RS-1 Gene: DMR_20000: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02396: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Desulfovibrio salexigens DSM 2638 Gene: Desal_2567: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Desulfovibrio vulgaris Hildenborough Gene: DVU3033: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_1868: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF	Lawsonia intracellularis PHE/MN1-00	Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE / Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DVU0621 - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --