Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Desulfovibrio vulgaris Hildenborough

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArsR Arsenate Arsenic resistance 2 4
TF BirA Biotin Biotin biosynthesis 2 2
TF CooA Carbon monoxide utilization 1 1
TF DVU0030 Amino acid transport 2 2
TF DVU0057 1 1
TF DVU0110 2 1
TF DVU0118 1 1
TF DVU0151 Metabolite transport 2 2
TF DVU0309 2 4
TF DVU0379 Uranium reduction 1 1
TF DVU0436 1 1
TF DVU0525 Multidrug resistance 1 1
TF DVU0539/DVU0946 4 8
TF DVU0569 Amino acid metabolism 1 2
TF DVU0619 1 3
TF DVU0621 Nitrite Nitrate and nitrite respiration 3 4
TF DVU0744 1 4
TF DVU0804 1 1
TF DVU1063 Motility 12 13
TF DVU1156 1 3
TF DVU1419 2 3
TF DVU1760 2 4
TF DVU1964/DVU1967 2 2
TF DVU2086 1 1
TF DVU2106 Nitrogen fixation 2 3
TF DVU2114 3 5
TF DVU2275 Pyruvate metabolism 2 1
TF DVU2359 1 3
TF DVU2394 Energy metabolism 4 1
TF DVU2423 Nitrogen metabolism 3 2
TF DVU2644 Amino acid metabolism 1 1
TF DVU2802 1 1
TF DVU2819 Metabolite transport 1 1
TF DVU2827 Pyruvate metabolism 3 4
TF DVU2894 Motility 8 3
TF DVU2934 1 3
TF DVU2953 Metabolite transport 1 1
TF DVU2956 1 1
TF DVU3023 Lactate Lactate utilization 3 7
TF DVU3111 Alkaline stress response 3 3
TF DVU3305 2 4
TF DVUA0057 Biofilm formation 7 11
TF DVUA0100 3 7
TF DVUA0143 Nitrogen fixation 2 3
TF FliA Motility 18 11
TF Fur Iron ion, (Fe2+) Iron homeostasis 15 25
TF GlpR Glycerol 3-phosphate Glycerol utilization 1 2
TF HcpR Nitric oxide Nitrosative stress response 6 3
TF HmcR Energy metabolism 2 2
TF HrcA Heat shock Heat shock response 4 1
TF HrsM 3 3
TF KdpR KdpS, sensor histidine kinase Potassium homeostasis 1 2
TF LldR L-lactate Lactate utilization 2 2
TF LysX Lysine biosynthesis 4 3
TF ModE2 Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 12 4
TF NifA-1 Nitrogen assimilation 9 16
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 3 2
TF OhcR Energy metabolism 1 2
TF PerR Peroxide stress response 5 4
TF PhoB Inorganic phosphate Phosphate metabolism 14 12
TF PspF PspA regulatory protein Phage shock response 1 1
TF Rex NADH Energy metabolism 17 14
TF RpoH Heat shock Heat shock response 6 4
TF RpoN Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism 98 84
TF SahR S-adenosylhomocysteine Methionine metabolism 5 4
TF SmtB Heavy metal resistance 2 1
TF TmcR Energy metabolism 1 1
TF TunR Molybdate; Tungsten Tungsten homeostasis; Molybdenum homeostasis 11 3
TF TunR2 Molybdenum homeostasis; Metabolite transport 2 2
TF ZraR Zinc ion, (Zn2+) Zinc homeostasis 3 5
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 10 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA SAM S-adenosylmethionine Methionine biosynthesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA yybP-ykoY 2 1
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