Regulog DVUA0143 - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen fixation
Effector:
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 22 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - Fis
By pathway - Nitrogen fixation

Statistics of regulated genes
Genome	Genes	Operons
Desulfovibrio vulgaris Hildenborough	10	2
Desulfovibrio vulgaris str. Miyazaki F	11	2
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio salexigens DSM 2638	13	2
Desulfovibrio piger ATCC 29098
Desulfovibrio magneticus RS-1	10	3
Desulfomicrobium baculatum DSM 4028	12	3
Desulfohalobium retbaense DSM 5692
Lawsonia intracellularis PHE/MN1-00

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
nifH	* Desulfovibrio vulgaris Hildenborough Site: position = -435 score = 4.7845 sequence = CTACAAAAATGTAG Gene: DVUA0015: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -230 score = 4.24909 sequence = CAACGCATTTGTCG Site: position = -212 score = 4.56277 sequence = CGACAAAATGGTCG Gene: DvMF_2613: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	* Desulfovibrio salexigens DSM 2638 Site: position = -182 score = 4.95185 sequence = CTACAATTTTGTAC Site: position = -200 score = 4.08356 sequence = CTGCAAAAATGTAG Gene: Desal_0447: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	Desulfovibrio piger ATCC 29098	* Desulfovibrio magneticus RS-1 Site: position = -168 score = 4.17482 sequence = CAACAAAAATGTTT Site: position = -191 score = 4.35618 sequence = GAACATTTTTGTCG Site: position = -204 score = 5.07262 sequence = CGACATTTATGTCG Gene: DMR_20560: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	* Desulfomicrobium baculatum DSM 4028 Site: position = -184 score = 5.25669 sequence = CTACATTTTTGTCT Gene: Dbac_0834: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
glnB-3	Desulfovibrio vulgaris Hildenborough Gene: DVUA0014: nitrogen regulatory protein P-II	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2614: nitrogen regulatory protein P-II	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0446: nitrogen regulatory protein P-II	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1 Gene: DMR_20550: nitrogen regulatory protein P-II	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0835: nitrogen regulatory protein P-II	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	nitrogen regulatory protein P-II
glnB-2	Desulfovibrio vulgaris Hildenborough Gene: DVUA0013: nitrogen regulatory protein P-II	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2615: nitrogen regulatory protein P-II	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0445: nitrogen regulatory protein P-II	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1 Gene: DMR_20540: nitrogen regulatory protein P-II	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0836: nitrogen regulatory protein P-II	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	nitrogen regulatory protein P-II
nifD	Desulfovibrio vulgaris Hildenborough Gene: DVUA0012: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2616: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0444: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1 Gene: DMR_20530: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0837: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
nifK	Desulfovibrio vulgaris Hildenborough Gene: DVUA0011: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2617: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0443: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1 Gene: DMR_20520: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0838: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
DvMF_2618	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2618: Dinitrogenase iron-molybdenum cofactor biosynthesis protein	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0442: Dinitrogenase iron-molybdenum cofactor biosynthesis protein	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0839: Dinitrogenase iron-molybdenum cofactor biosynthesis protein	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	Dinitrogenase iron-molybdenum cofactor biosynthesis protein
DVUA0010	Desulfovibrio vulgaris Hildenborough Gene: DVUA0010: ferredoxin, 2fe-2s	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2619: ferredoxin, 2fe-2s	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0441: ferredoxin, 2fe-2s	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1 Gene: DMR_20510: ferredoxin, 2fe-2s	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0840: ferredoxin, 2fe-2s	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	ferredoxin, 2fe-2s
Desal_0440	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0440: GCN5-related N-acetyltransferase	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	GCN5-related N-acetyltransferase
nifE	Desulfovibrio vulgaris Hildenborough Gene: DVUA0009: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2620: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0439: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE	Desulfovibrio piger ATCC 29098	* Desulfovibrio magneticus RS-1 Site: position = -125 score = 4.70253 sequence = CGACAAATTTGTTT Site: position = -148 score = 4.78774 sequence = CTACAATTCTGTCG Gene: DMR_17520: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0841: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
nifN	Desulfovibrio vulgaris Hildenborough Gene: DVUA0008: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2621: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0438: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1 Gene: DMR_17510: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0842: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
nifB	Desulfovibrio vulgaris Hildenborough Gene: DVUA0007: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2622: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0437: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1 Gene: DMR_17500: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_0843: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB

CRON 2.
nifV	* Desulfovibrio vulgaris Hildenborough Site: position = -354 score = 4.17139 sequence = CGACGATTCTGTAG Site: position = -336 score = 5.25669 sequence = CTACATTTTTGTAG Gene: DVUA0016: pyruvate carboxyltransferase	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -406 score = 4.5815 sequence = CGACCATTTTGTCG Site: position = -388 score = 3.94853 sequence = CGACAAATGCGTTG Gene: DvMF_2612: pyruvate carboxyltransferase	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	* Desulfovibrio salexigens DSM 2638 Site: position = -157 score = 4.26763 sequence = GTACAAAATTGTAG Site: position = -139 score = 4.55575 sequence = CTACATTTTTGCAG Gene: Desal_0448: pyruvate carboxyltransferase	Desulfovibrio piger ATCC 29098	Desulfovibrio magneticus RS-1	* Desulfomicrobium baculatum DSM 4028 Site: position = -156 score = 3.97828 sequence = AGACAAAAATGTAG Gene: Dbac_0833: pyruvate carboxyltransferase	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	pyruvate carboxyltransferase
Dbac_0547	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2323: hypothetical protein	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio salexigens DSM 2638 Gene: Desal_0449: hypothetical protein	Desulfovibrio piger ATCC 29098	* Desulfovibrio magneticus RS-1 Site: position = -114 score = 4.59272 sequence = CGACGCTTTTGTCG Site: position = -93 score = 4.38193 sequence = CCACGATTTTGTCG Site: position = -49 score = 4.20115 sequence = CGACAATATTGAAT Gene: DMR_11080: hypothetical protein	* Desulfomicrobium baculatum DSM 4028 Site: position = -120 score = 4.78774 sequence = CCACATTTTTGTCG Gene: Dbac_0547: hypothetical protein	Desulfohalobium retbaense DSM 5692	Lawsonia intracellularis PHE/MN1-00	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DVUA0143 - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --