Regulog DVUA0143 - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen fixation |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
- By pathway - Nitrogen fixation
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 10 | 2 |
| Desulfovibrio vulgaris str. Miyazaki F | 11 | 2 |
| Desulfovibrio desulfuricans G20 | ||
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio salexigens DSM 2638 | 13 | 2 |
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio magneticus RS-1 | 10 | 3 |
| Desulfomicrobium baculatum DSM 4028 | 12 | 3 |
| Desulfohalobium retbaense DSM 5692 | ||
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| nifH |
*
Desulfovibrio vulgaris Hildenborough Site: position = -435 score = 4.7845 sequence = CTACAAAAATGTAG Gene: DVUA0015: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -230 score = 4.24909 sequence = CAACGCATTTGTCG Site: position = -212 score = 4.56277 sequence = CGACAAAATGGTCG Gene: DvMF_2613: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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Desulfovibrio salexigens DSM 2638 Site: position = -182 score = 4.95185 sequence = CTACAATTTTGTAC Site: position = -200 score = 4.08356 sequence = CTGCAAAAATGTAG Gene: Desal_0447: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
|
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Desulfovibrio magneticus RS-1 Site: position = -168 score = 4.17482 sequence = CAACAAAAATGTTT Site: position = -191 score = 4.35618 sequence = GAACATTTTTGTCG Site: position = -204 score = 5.07262 sequence = CGACATTTATGTCG Gene: DMR_20560: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -184 score = 5.25669 sequence = CTACATTTTTGTCT Gene: Dbac_0834: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
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Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
| glnB-3 |
Gene: DVUA0014: nitrogen regulatory protein P-II |
Gene: DvMF_2614: nitrogen regulatory protein P-II |
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Gene: Desal_0446: nitrogen regulatory protein P-II |
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Gene: DMR_20550: nitrogen regulatory protein P-II |
Gene: Dbac_0835: nitrogen regulatory protein P-II |
|
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nitrogen regulatory protein P-II |
| glnB-2 |
Gene: DVUA0013: nitrogen regulatory protein P-II |
Gene: DvMF_2615: nitrogen regulatory protein P-II |
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Gene: Desal_0445: nitrogen regulatory protein P-II |
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Gene: DMR_20540: nitrogen regulatory protein P-II |
Gene: Dbac_0836: nitrogen regulatory protein P-II |
|
|
nitrogen regulatory protein P-II |
| nifD |
Gene: DVUA0012: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Gene: DvMF_2616: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
|
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Gene: Desal_0444: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
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Gene: DMR_20530: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Gene: Dbac_0837: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
|
|
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
| nifK |
Gene: DVUA0011: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Gene: DvMF_2617: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
|
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Gene: Desal_0443: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
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Gene: DMR_20520: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Gene: Dbac_0838: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
|
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Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
| DvMF_2618 |
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Gene: DvMF_2618: Dinitrogenase iron-molybdenum cofactor biosynthesis protein |
|
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Gene: Desal_0442: Dinitrogenase iron-molybdenum cofactor biosynthesis protein |
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Gene: Dbac_0839: Dinitrogenase iron-molybdenum cofactor biosynthesis protein |
|
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Dinitrogenase iron-molybdenum cofactor biosynthesis protein |
| DVUA0010 |
Gene: DVUA0010: ferredoxin, 2fe-2s |
Gene: DvMF_2619: ferredoxin, 2fe-2s |
|
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Gene: Desal_0441: ferredoxin, 2fe-2s |
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Gene: DMR_20510: ferredoxin, 2fe-2s |
Gene: Dbac_0840: ferredoxin, 2fe-2s |
|
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ferredoxin, 2fe-2s |
| Desal_0440 |
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Gene: Desal_0440: GCN5-related N-acetyltransferase |
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GCN5-related N-acetyltransferase |
| nifE |
Gene: DVUA0009: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Gene: DvMF_2620: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
|
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Gene: Desal_0439: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
|
*
Desulfovibrio magneticus RS-1 Site: position = -125 score = 4.70253 sequence = CGACAAATTTGTTT Site: position = -148 score = 4.78774 sequence = CTACAATTCTGTCG Gene: DMR_17520: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Gene: Dbac_0841: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
|
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Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
| nifN |
Gene: DVUA0008: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Gene: DvMF_2621: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
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Gene: Desal_0438: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
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Gene: DMR_17510: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Gene: Dbac_0842: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
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Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
| nifB |
Gene: DVUA0007: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
Gene: DvMF_2622: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
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Gene: Desal_0437: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
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Gene: DMR_17500: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
Gene: Dbac_0843: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
|
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Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
| CRON 2. | |||||||||||
| nifV |
*
Desulfovibrio vulgaris Hildenborough Site: position = -354 score = 4.17139 sequence = CGACGATTCTGTAG Site: position = -336 score = 5.25669 sequence = CTACATTTTTGTAG Gene: DVUA0016: pyruvate carboxyltransferase |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -406 score = 4.5815 sequence = CGACCATTTTGTCG Site: position = -388 score = 3.94853 sequence = CGACAAATGCGTTG Gene: DvMF_2612: pyruvate carboxyltransferase |
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*
Desulfovibrio salexigens DSM 2638 Site: position = -157 score = 4.26763 sequence = GTACAAAATTGTAG Site: position = -139 score = 4.55575 sequence = CTACATTTTTGCAG Gene: Desal_0448: pyruvate carboxyltransferase |
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*
Desulfomicrobium baculatum DSM 4028 Site: position = -156 score = 3.97828 sequence = AGACAAAAATGTAG Gene: Dbac_0833: pyruvate carboxyltransferase |
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pyruvate carboxyltransferase |
| Dbac_0547 |
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Gene: DvMF_2323: hypothetical protein |
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Gene: Desal_0449: hypothetical protein |
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Desulfovibrio magneticus RS-1 Site: position = -114 score = 4.59272 sequence = CGACGCTTTTGTCG Site: position = -93 score = 4.38193 sequence = CCACGATTTTGTCG Site: position = -49 score = 4.20115 sequence = CGACAATATTGAAT Gene: DMR_11080: hypothetical protein |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -120 score = 4.78774 sequence = CCACATTTTTGTCG Gene: Dbac_0547: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |