Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SmtB - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: ArsR
Regulation mode: repressor
Biological process: Heavy metal resistance
Effector:
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 1 1
Desulfovibrio vulgaris str. Miyazaki F 1 1
Desulfovibrio desulfuricans G20 1 1
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 2 1
Desulfovibrio magneticus RS-1
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028 2 1
Desulfohalobium retbaense DSM 5692 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
smtB
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2788: Transcriptional regulator, ArsR family
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_1207: Transcriptional regulator, ArsR family
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -42
score = 6.71489
sequence = TATATGAACAGTTGTTCATATA

Gene: Desal_1113: Transcriptional regulator, ArsR family
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -64
score = 5.6412
sequence = TACTTGAACAACTATTCAAGCG

Gene: Dbac_1470: Transcriptional regulator, ArsR family
*
Desulfohalobium retbaense DSM 5692

Site:
position = -47
score = 5.65441
sequence = TAATTGAACAATTGATCAAGCG

Gene: Dret_2262: Transcriptional regulator, ArsR family
Transcriptional regulator, ArsR family
DVU3386
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -19
score = 6.22273
sequence = CGCATGAACAGATGTTCATATG

Gene: DVU3386: permease, putative
 
Desulfovibrio vulgaris str. Miyazaki F
*
Desulfovibrio desulfuricans G20

Site:
position = -61
score = 6.39747
sequence = CATATGAACGATTGCTCATATG

Site:
position = -45
score = 5.6514
sequence = CATATGTATGTTTGTTCATAAA

Gene: Dde_0132: permease, putative
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_1112: permease, putative
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1469: permease, putative
 
Desulfohalobium retbaense DSM 5692
permease, putative
Dret_2261
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_2261: heavy metal translocating P-type ATPase
heavy metal translocating P-type ATPase
 
CRON 2.
DvMF_2066
 
Desulfovibrio vulgaris Hildenborough
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -89
score = 6.48656
sequence = CATATGAACACGTGTTCATATG

Gene: DvMF_2066: heavy metal translocating P-type ATPase
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
heavy metal translocating P-type ATPase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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