Regulons of Desulfohalobium retbaense DSM 5692
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
ArsR |
Arsenate |
Arsenic resistance |
3 |
4 |
| TF |
CooA |
|
Carbon monoxide utilization |
1 |
1 |
| TF |
DVU0030 |
|
Amino acid transport |
2 |
2 |
| TF |
DVU0309 |
|
|
2 |
2 |
| TF |
DVU0539/DVU0946 |
|
|
4 |
9 |
| TF |
DVU0569 |
|
Amino acid metabolism |
1 |
1 |
| TF |
DVU1063 |
|
Motility |
4 |
1 |
| TF |
DVU1419 |
|
|
1 |
1 |
| TF |
DVU2106 |
|
Nitrogen fixation |
2 |
1 |
| TF |
DVU2114 |
|
|
4 |
1 |
| TF |
DVU2394 |
|
Energy metabolism |
3 |
2 |
| TF |
DVU2423 |
|
Nitrogen metabolism |
4 |
1 |
| TF |
DVU2802 |
|
|
1 |
1 |
| TF |
DVU2894 |
|
Motility |
2 |
1 |
| TF |
DVU2934 |
|
|
1 |
2 |
| TF |
DVU3023 |
Lactate |
Lactate utilization |
1 |
3 |
| TF |
DVU3305 |
|
|
2 |
2 |
| TF |
Desal_2066 |
|
|
3 |
2 |
| TF |
FliA |
|
Motility |
4 |
3 |
| TF |
Fur |
Iron ion, (Fe2+) |
Iron homeostasis |
6 |
1 |
| TF |
HcpR |
Nitric oxide |
Nitrosative stress response |
5 |
3 |
| TF |
HmcR |
|
Energy metabolism |
1 |
2 |
| TF |
HrcA |
Heat shock |
Heat shock response |
2 |
1 |
| TF |
HrsM |
|
|
2 |
1 |
| TF |
LldR |
L-lactate |
Lactate utilization |
2 |
1 |
| TF |
ModE2 |
Molybdenum |
Molybdopterin biosynthesis; Molybdenum homeostasis |
7 |
3 |
| TF |
NifA-1 |
|
Nitrogen assimilation |
8 |
9 |
| TF |
OhcR |
|
Energy metabolism |
2 |
2 |
| TF |
PerR |
|
Peroxide stress response |
6 |
3 |
| TF |
PhoB |
Inorganic phosphate |
Phosphate metabolism |
10 |
5 |
| TF |
Rex |
NADH |
Energy metabolism |
16 |
12 |
| TF |
RpoH |
Heat shock |
Heat shock response |
5 |
2 |
| TF |
RpoN |
|
Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism |
35 |
16 |
| TF |
SahR |
S-adenosylhomocysteine |
Methionine metabolism |
3 |
2 |
| TF |
SmtB |
|
Heavy metal resistance |
1 |
1 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
2 |
1 |
| RNA |
GEMM_RNA_motif |
Cyclic diguanylate |
Second messenger response |
3 |
2 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
2 |
2 |
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