# TF - RpoH: Dret_0858
>Dret_0512(clpX) Score=4.8 Pos=-186 [Desulfohalobium retbaense DSM 5692]
CTGGAAA-------------ACTGAT
>Dret_2176(groEL) Score=5.3 Pos=-242 [Desulfohalobium retbaense DSM 5692]
CCCGACA-------------GCCCAT
# TF - PhoB: Dret_0467
>Dret_1361 Score=4.4 Pos=-147 [Desulfohalobium retbaense DSM 5692]
TTGTCACACGATTGTATA
>Dret_2292 Score=3.9 Pos=-102 [Desulfohalobium retbaense DSM 5692]
GCGCCATGCCTGTGTCAC
>Dret_1981 Score=5.4 Pos=-203 [Desulfohalobium retbaense DSM 5692]
GCGTCATAGCATTGTCAC
>Dret_0464 Score=4.2 Pos=-267 [Desulfohalobium retbaense DSM 5692]
TTGTTACCGCAATGTTAC
>Dret_0464 Score=5 Pos=-96 [Desulfohalobium retbaense DSM 5692]
TTGTCGCAGGATTGTCAC
# TF - PerR: Dret_0141
>Dret_0248 Score=5.7 Pos=-53 [Desulfohalobium retbaense DSM 5692]
GATAGGAATAATTATTATT
>Dret_0141(perR) Score=5 Pos=-39 [Desulfohalobium retbaense DSM 5692]
TATAGTAATAATTATCAAT
>Dret_1205(rbr) Score=4.9 Pos=-49 [Desulfohalobium retbaense DSM 5692]
AATCGTAACCATTGTTATT
# TF - ArsR: Dret_1784
>Dret_1784(arsR) Score=4.2 Pos=-12 [Desulfohalobium retbaense DSM 5692]
ACTTTGCCAAGTATGCAAAC
>Dret_1783 Score=5.2 Pos=-49 [Desulfohalobium retbaense DSM 5692]
ATTTGGCTTTTTGGGAAAAT
>Dret_1783 Score=3.7 Pos=-42 [Desulfohalobium retbaense DSM 5692]
TTTTTGGGAAAATAGAAAAT
>Dret_1784(arsR) Score=5 Pos=-20 [Desulfohalobium retbaense DSM 5692]
ATTTGGTTACTTTGCCAAGT
# TF - LldR: Dret_0156
>Dret_0156(lldR) Score=5.9 Pos=-35 [Desulfohalobium retbaense DSM 5692]
CATTGGTAGGACCAATT
# TF - HrcA: Dret_0305
>Dret_2175(groS) Score=6.8 Pos=-69 [Desulfohalobium retbaense DSM 5692]
TTAGCACTCCCCTGACAGGAGTGCTAA
# TF - Fur
>Dret_1877(copA) Score=3.6 Pos=-179 [Desulfohalobium retbaense DSM 5692]
TTGATGTCCATATACAG
# TF - FliA: Dret_0591
>Dret_0630 Score=7.2 Pos=-145 [Desulfohalobium retbaense DSM 5692]
TAAAGGAA-----------TCCGATAA
>Dret_0600(flgM) Score=7.2 Pos=-114 [Desulfohalobium retbaense DSM 5692]
TAAACCCC-----------GCCGATAC
>Dret_0593(flgF) Score=7.9 Pos=-108 [Desulfohalobium retbaense DSM 5692]
TAAAGTTC-----------TCCGATAC
# TF - DVU2802: Dret_0921
>Dret_0921 Score=4.9 Pos=-108 [Desulfohalobium retbaense DSM 5692]
AATTGGTCTATCCAAAA
# TF - DVU2423: Dret_0703
>Dret_0703 Score=4.1 Pos=-143 [Desulfohalobium retbaense DSM 5692]
GTGTGCCCTGCTTTGCATAC
# TF - DVU0030: Dret_1471
>Dret_1470 Score=4.5 Pos=-372 [Desulfohalobium retbaense DSM 5692]
TCGAAATTGTATCTGTCTCAG
>Dret_1471 Score=4.5 Pos=-40 [Desulfohalobium retbaense DSM 5692]
CTGAGACAGATACAATTTCGA
# TF - CooA: Dret_1233
>Dret_1234(cooS) Score=6 Pos=-92 [Desulfohalobium retbaense DSM 5692]
TGTCAGCCAGCTGACA
# TF - SmtB: Dret_2262
>Dret_2262(smtB) Score=5.7 Pos=-47 [Desulfohalobium retbaense DSM 5692]
TAATTGAACAATTGATCAAGCG
# TF - SahR: Dret_2302
>Dret_2302(sahR) Score=4.7 Pos=-172 [Desulfohalobium retbaense DSM 5692]
TTATCAACTTTTTCAGATAT
>Dret_2255(bhmT) Score=6.3 Pos=-102 [Desulfohalobium retbaense DSM 5692]
ATATCAAAATATCTTGATAT
# TF - Desal_2066: Dret_1643
>Dret_2254 Score=6.3 Pos=-305 [Desulfohalobium retbaense DSM 5692]
CATTGATCTCAATCAATG
>Dret_1643 Score=6.1 Pos=-85 [Desulfohalobium retbaense DSM 5692]
CATTGATGCAGATCAAGG
# TF - HcpR: Dret_1279
>Dret_2386(hcp) Score=6 Pos=-121 [Desulfohalobium retbaense DSM 5692]
TTTTGACTCAGGTCAAAG
>Dret_2382 Score=5.7 Pos=-105 [Desulfohalobium retbaense DSM 5692]
TTTTGATGCAGGTCAAAG
>Dret_1280(frdX) Score=5.3 Pos=-93 [Desulfohalobium retbaense DSM 5692]
ATTTGATCCGCGTCAAAG
# RNA - TPP
>Dret_2294(thiD) Score=72.7 Pos=-262 [Desulfohalobium retbaense DSM 5692]
TCTTTCGCTAGGGGAGGGGAGTATATCCCCTGAGAGTCCCGACACCGATCGGGAGACCCTTGGAACCTGAACTGGGTAATACCTGCGCAGGGAAGCGAGTCGACACGTGAGT
>Dret_0726(thiS) Score=63.7 Pos=-280 [Desulfohalobium retbaense DSM 5692]
CACAATGCTGGGGGAGCCCTTCGGGGCTGAGAGGGACTGCGGTCCGACCCTTGGAACCTGACGCGGTTTGAACCGCCGGAGGGAAGCAGCCAAGCCGAAACAC
# RNA - Cobalamin
>Dret_0028(btuB) Score=108.9 Pos=-302 [Desulfohalobium retbaense DSM 5692]
GTTGTATCCTGCCCCCAGGTCGCCTTACGTATCGCGTGAGGGTGAAATGGGAAGTCCGGTGAAAATCCGGCGCTGGCCCGCAACCGTGAGAGGGGACGGCGGACACAGATAAGCCACTGCCTGCAGCAGGTGGGAAGGCGTGTCCGGCCGGCAGATCCTCAAGCCGGGAGACCAGCCTGAGGGGCGTAACCAATCGG
# RNA - GEMM_RNA_motif
>Dret_0342(mcp2) Score=57.8 Pos=-400 [Desulfohalobium retbaense DSM 5692]
GGACTGACAAAGCCAAACCCGTCGTGAGGCGAGGACGGAAAGCCACGGGTCTCAATGAGACAGCCGGGTTGCCGGA
>Dret_0945 Score=62.4 Pos=-292 [Desulfohalobium retbaense DSM 5692]
ACTGACAAAGCCAAACCCGTCGTGAGGCGGGGACGGAAAGCCACGGGTCTCAATGAGACAGCCGGGTTGCCGGATG
# TF - ModE2: Dret_2172
>Dret_0525(wtpA) Score=4.4 Pos=-32 [Desulfohalobium retbaense DSM 5692]
TATATGTCTTTTTTAGCAAAGG
>Dret_0225 Score=5 Pos=-10 [Desulfohalobium retbaense DSM 5692]
GTTATGTTTTATGAGGCATAAC
>Dret_1807 Score=4.6 Pos=-166 [Desulfohalobium retbaense DSM 5692]
GCTATGCAAAAAATCACATAAG
# TF - OhcR: Dret_0168
>Dret_0167 Score=5 Pos=-343 [Desulfohalobium retbaense DSM 5692]
CACAATGTTTAAACATGTGT
>Dret_0167 Score=4.6 Pos=-331 [Desulfohalobium retbaense DSM 5692]
ACATGTGTTTAAACACCCTG
# TF - HmcR: Dret_0867
>Dret_0877(hmcA) Score=5.1 Pos=-158 [Desulfohalobium retbaense DSM 5692]
TCGCCTACTCAGCCGGTAGGTTT
>Dret_0877(hmcA) Score=5.5 Pos=-133 [Desulfohalobium retbaense DSM 5692]
ATACCTACCACTGAAGTAGGATT
# TF - Rex: Dret_2085
>Dret_1683(adk) Score=4.8 Pos=-29 [Desulfohalobium retbaense DSM 5692]
TTTGTGAAATTTTTCTTCAG
>Dret_2089(atpI1) Score=4.6 Pos=-11 [Desulfohalobium retbaense DSM 5692]
CTTGTGAATGAATGCACGAA
>Dret_2085(rex) Score=4.5 Pos=-19 [Desulfohalobium retbaense DSM 5692]
ATTGTGAAATTTAGAGCAAA
>Dret_1967(apsB) Score=4.4 Pos=-167 [Desulfohalobium retbaense DSM 5692]
CTTGCGCTAAATTTCACTTT
>Dret_0270(qrcA) Score=4.7 Pos=-102 [Desulfohalobium retbaense DSM 5692]
CTCGTGAAATTGTGCACAGG
>Dret_0270(qrcA) Score=4.8 Pos=-176 [Desulfohalobium retbaense DSM 5692]
ATCGTGAAATTTTTCATGAG
>Dret_0234 Score=3.8 Pos=-70 [Desulfohalobium retbaense DSM 5692]
AATGTGAAATTCGGCACACA
>Dret_1968(sat) Score=4.8 Pos=-273 [Desulfohalobium retbaense DSM 5692]
CTTGTGCAATAGCGCACAAG
>Dret_1968(sat) Score=5.1 Pos=-130 [Desulfohalobium retbaense DSM 5692]
ATTGATAAAAAAATCACAAA
>Dret_1594(ppaC) Score=5.3 Pos=-84 [Desulfohalobium retbaense DSM 5692]
TTTGTGCTATTTGGCACAAA
>Dret_0244(dsrA) Score=4.1 Pos=-109 [Desulfohalobium retbaense DSM 5692]
GTTGTACGAAAAATCACAAT
>Dret_2217(atpF1) Score=4.3 Pos=-35 [Desulfohalobium retbaense DSM 5692]
TTTGAACCAAAATTCACATA
# TF - HrsM: Dret_2037
>Dret_2037(hrsM) Score=5.2 Pos=-275 [Desulfohalobium retbaense DSM 5692]
CATAGATTTTCTCTATA
# TF - NifA-1: Dret_0831
>Dret_0402(DVU0671) Score=4.6 Pos=-87 [Desulfohalobium retbaense DSM 5692]
TTTACATTTTCGTAAC
>Dret_2267(amtB) Score=4.2 Pos=-132 [Desulfohalobium retbaense DSM 5692]
ATGCCATTTTTGACAA
>Dret_2267(amtB) Score=3.9 Pos=-173 [Desulfohalobium retbaense DSM 5692]
GTAACAAATTTGTCCA
>Dret_0113(amtB2) Score=5 Pos=-151 [Desulfohalobium retbaense DSM 5692]
TTTTCAATTTTGTCAA
>Dret_0113(amtB2) Score=4.5 Pos=-270 [Desulfohalobium retbaense DSM 5692]
ATTCCATTTTTGTAAC
>Dret_0113(amtB2) Score=3.9 Pos=-393 [Desulfohalobium retbaense DSM 5692]
GTTTCAGAAATGGAAG
>Dret_2389(glnA) Score=5 Pos=-141 [Desulfohalobium retbaense DSM 5692]
TTGACAAAAATGAAAA
>Dret_2389(glnA) Score=4.5 Pos=-182 [Desulfohalobium retbaense DSM 5692]
TTTTCGTTTTTGTCAA
>Dret_2389(glnA) Score=3.9 Pos=-173 [Desulfohalobium retbaense DSM 5692]
TTGTCAATATTGGATC
# TF - DVU2114
>Dret_1172 Score=4.1 Pos=-265 [Desulfohalobium retbaense DSM 5692]
AATCTAATTTTTCGAGAGA
# TF - DVU2894: Dret_0568
>Dret_0578 Score=5 Pos=-374 [Desulfohalobium retbaense DSM 5692]
TGTCAATTTCCTGACT
# TF - DVU1419: Dret_2392
>Dret_2390 Score=5.7 Pos=-153 [Desulfohalobium retbaense DSM 5692]
TGTGCAGCGCATTGCACA
# TF - DVU0309: Dret_0355
>Dret_0354 Score=5.3 Pos=-184 [Desulfohalobium retbaense DSM 5692]
CCTATCAGAAATTTTGATAGC
>Dret_0355 Score=5.3 Pos=-418 [Desulfohalobium retbaense DSM 5692]
GCTATCAAAATTTCTGATAGG
# TF - DVU2394: Dret_0200
>Dret_0199(adh) Score=4.5 Pos=-296 [Desulfohalobium retbaense DSM 5692]
TGTATCATTTTTTCCCA
>Dret_0199(adh) Score=4.8 Pos=-264 [Desulfohalobium retbaense DSM 5692]
CGTGTCATTTTGCTACA
# TF - DVU3023: Dret_0776
>Dret_1039(lldP) Score=4.9 Pos=-174 [Desulfohalobium retbaense DSM 5692]
TGTCCGCTATCCAGGACA
>Dret_1039(lldP) Score=4.4 Pos=-362 [Desulfohalobium retbaense DSM 5692]
AGGCCCAATTCCCAGACA
>Dret_1039(lldP) Score=4.4 Pos=-532 [Desulfohalobium retbaense DSM 5692]
TGTCTGAACTCCAGGACA
# TF - DVU0539/DVU0946: Dret_1222, Dret_0970
>Dret_0969(DVU0540) Score=5.2 Pos=-78 [Desulfohalobium retbaense DSM 5692]
TGCCAACTCGCGTTTACA
>Dret_1220(DVU0943) Score=4.5 Pos=-401 [Desulfohalobium retbaense DSM 5692]
TGCTAAGCGCGATTGGCA
>Dret_1220(DVU0943) Score=4.7 Pos=-292 [Desulfohalobium retbaense DSM 5692]
TGCAATCCCGGCTTAGCA
>Dret_1220(DVU0943) Score=5.2 Pos=-268 [Desulfohalobium retbaense DSM 5692]
TGCCAACCGCGGTTGGCA
>Dret_1220(DVU0943) Score=4.4 Pos=-32 [Desulfohalobium retbaense DSM 5692]
AGCAAAGACACGTATGCA
>Dret_1221(DVU0540) Score=5.2 Pos=-484 [Desulfohalobium retbaense DSM 5692]
TGCCAACCGCGGTTGGCA
>Dret_1221(DVU0540) Score=4.7 Pos=-460 [Desulfohalobium retbaense DSM 5692]
TGCTAAGCCGGGATTGCA
>Dret_1221(DVU0540) Score=4.3 Pos=-351 [Desulfohalobium retbaense DSM 5692]
TGCCAATCGCGCTTAGCA
>Dret_0967 Score=5 Pos=-399 [Desulfohalobium retbaense DSM 5692]
TGTAAACGCGAGTTGGCA
# TF - DVU0569: Dret_1486
>Dret_1485(ald) Score=4.7 Pos=-344 [Desulfohalobium retbaense DSM 5692]
TGGTTCTTTTGCGTACCA
# TF - DVU2106: Dret_0447
>Dret_0446 Score=5.1 Pos=-146 [Desulfohalobium retbaense DSM 5692]
AGACAAATAATTCGCCC
# TF - DVU2934: Dret_0548
>Dret_2081(lpxC) Score=3.8 Pos=-114 [Desulfohalobium retbaense DSM 5692]
TGTGTCAAAGGGACA
>Dret_2081(lpxC) Score=3.6 Pos=-136 [Desulfohalobium retbaense DSM 5692]
TGTCAAAGAACAACA
# TF - DVU3305: Dret_0701
>Dret_0700 Score=5.1 Pos=-591 [Desulfohalobium retbaense DSM 5692]
TGTTGCAAAAAACAACG
>Dret_0700 Score=5.1 Pos=-574 [Desulfohalobium retbaense DSM 5692]
CGTTGCAAAAAACAACA
# TF - RpoN: Dret_1601
>Dret_2390(zraP) Score=5 Pos=-78 [Desulfohalobium retbaense DSM 5692]
TTTGGCACGCCCAATGCAT
>Dret_0589(flhF) Score=4.2 Pos=-92 [Desulfohalobium retbaense DSM 5692]
GACGGAACGGTATTTGCCC
>Dret_0569(fliF) Score=4.5 Pos=-290 [Desulfohalobium retbaense DSM 5692]
ATTGGAGCACTTTTTGCTC
>Dret_0569(fliF) Score=4.7 Pos=-130 [Desulfohalobium retbaense DSM 5692]
TATGGCGTGGTATTTGCAT
>Dret_0653(flgB) Score=3.5 Pos=-159 [Desulfohalobium retbaense DSM 5692]
TAGGGCTCAGGTGTTGCCT
>Dret_0199(adh) Score=4.9 Pos=-95 [Desulfohalobium retbaense DSM 5692]
TTTGGCCCGATATTTGCTC
>Dret_2267(amt) Score=5.1 Pos=-53 [Desulfohalobium retbaense DSM 5692]
TTTGGCACCTCTCTTGCCT
>Dret_2081(lpxC) Score=4.9 Pos=-40 [Desulfohalobium retbaense DSM 5692]
CGTGGAATGATTTTTGCTT
>Dret_0578(motA) Score=4.5 Pos=-51 [Desulfohalobium retbaense DSM 5692]
GCTGGCATAATTTATGCTA
>Dret_0446 Score=4.8 Pos=-67 [Desulfohalobium retbaense DSM 5692]
ATCGGCACGGACATTGCTA
>Dret_0113(amt) Score=4.8 Pos=-70 [Desulfohalobium retbaense DSM 5692]
ATTGGCCCCATCCTTGCTA
>Dret_0167 Score=4.1 Pos=-228 [Desulfohalobium retbaense DSM 5692]
TCAGGCATATAAATTGCTT
>Dret_0164 Score=4.6 Pos=-82 [Desulfohalobium retbaense DSM 5692]
ATCGGAACGGATATTGCTT
>Dret_1039(lldP) Score=4.5 Pos=-90 [Desulfohalobium retbaense DSM 5692]
TATGGCATGGATATTGAAT
>Dret_1220 Score=4.6 Pos=-147 [Desulfohalobium retbaense DSM 5692]
TTTGGTTTGCTTTTTGCTT
>Dret_1485(ald) Score=4.6 Pos=-210 [Desulfohalobium retbaense DSM 5692]
TTTGGCAAAGTTTGTGCAT
# TF - DVU1063
>Dret_0653(flgB) Score=3.9 Pos=-273 [Desulfohalobium retbaense DSM 5692]
GGAAAGTCGTGCC