Regulog LldR - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Lactate utilization |
| Effector: | L-lactate |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By trascription factor - LldR
- By TF family - GntR/Others
- By effector - L-lactate
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 3 | 1 |
| Desulfovibrio vulgaris str. Miyazaki F | 2 | 1 |
| Desulfovibrio desulfuricans G20 | 2 | 1 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 3 | 1 |
| Desulfovibrio magneticus RS-1 | ||
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 4 | 3 |
| Desulfohalobium retbaense DSM 5692 | 3 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| lldR |
*
Desulfovibrio vulgaris Hildenborough Site: position = -65 score = 5.90913 sequence = GATTGGTACAACCAATT Site: position = -49 score = 5.77421 sequence = TATTGGTTGGACCAATC Gene: DVU2785: Lactate-responsive regulator LldR, GntR family |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -77 score = 4.96385 sequence = AATTGGTTCAACCAGTG Site: position = -61 score = 5.55422 sequence = GAGTGGTTGTACCAATT Gene: DvMF_1205: Lactate-responsive regulator LldR, GntR family |
*2
Desulfovibrio desulfuricans G20 Gene: Dde_0749: Lactate-responsive regulator LldR, GntR family Site: position = -31 score = 5.76891 sequence = AAGTGGTCAGACCAATT Gene: Dde_1244: Lactate-responsive regulator LldR, GntR family |
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*
Desulfovibrio salexigens DSM 2638 Site: position = -47 score = 5.47025 sequence = TATCGGTCAGACCAATT Site: position = -17 score = 5.81006 sequence = AATTGGTAGGACCCATT Gene: Desal_1467: Lactate-responsive regulator LldR, GntR family |
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*
Desulfomicrobium baculatum DSM 4028 Site: position = -32 score = 6.05008 sequence = TATTGGTAGGACCAATT Gene: Dbac_1975: Lactate-responsive regulator LldR, GntR family |
*
Desulfohalobium retbaense DSM 5692 Site: position = -35 score = 5.89624 sequence = CATTGGTAGGACCAATT Gene: Dret_0156: Lactate-responsive regulator LldR, GntR family |
Lactate-responsive regulator LldR, GntR family |
| lldX |
Gene: DVU2783: predicted lactate permease, DUF81 family |
Gene: DvMF_1203: predicted lactate permease, DUF81 family |
2
Desulfovibrio desulfuricans G20 Gene: Dde_0751: predicted lactate permease, DUF81 family Gene: Dde_1245: predicted lactate permease, DUF81 family |
Gene: Ddes_1872: predicted lactate permease, DUF81 family |
Gene: DESPIG_00304: predicted lactate permease, DUF81 family |
Gene: Desal_1466: predicted lactate permease, DUF81 family |
Gene: DMR_18860: predicted lactate permease, DUF81 family |
|
*
Desulfomicrobium baculatum DSM 4028 Site: position = -70 score = 6.09688 sequence = GATTGGTCCTACCAATT Gene: Dbac_0552: predicted lactate permease, DUF81 family |
Gene: Dret_0158: predicted lactate permease, DUF81 family |
predicted lactate permease, DUF81 family |
| lldD |
Gene: DVU2784: L-lactate dehydrogenase, FMN-dependent |
Gene: DvMF_1204: L-lactate dehydrogenase, FMN-dependent |
Gene: Dde_0750: L-lactate dehydrogenase, FMN-dependent |
|
Gene: DESPIG_02967: L-lactate dehydrogenase, FMN-dependent |
Gene: Desal_1465: L-lactate dehydrogenase, FMN-dependent |
Gene: DMR_21260: L-lactate dehydrogenase, FMN-dependent |
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Gene: Dbac_1976: L-lactate dehydrogenase, FMN-dependent |
Gene: Dret_0157: L-lactate dehydrogenase, FMN-dependent |
L-lactate dehydrogenase, FMN-dependent |
| CRON 2. | |||||||||||
| glcB |
Gene: DVU0701: Malate synthase G (EC 2.3.3.9) |
Gene: DvMF_2183: Malate synthase G (EC 2.3.3.9) |
Gene: Dde_1174: Malate synthase G (EC 2.3.3.9) |
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Gene: DMR_26930: Malate synthase G (EC 2.3.3.9) |
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*
Desulfomicrobium baculatum DSM 4028 Site: position = -42 score = 6.05008 sequence = TATTGGTAGGACCAATT Gene: Dbac_2068: Malate synthase G (EC 2.3.3.9) |
Gene: Dret_0331: Malate synthase G (EC 2.3.3.9) |
Malate synthase G (EC 2.3.3.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |