Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RpoN in Desulfovibrio vulgaris str. Miyazaki F

Properties
Regulator type: Transcription factor
TF locus tag: DvMF_0427
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Regulog: RpoN - Desulfovibrionales
Statistics of regulated genes:
- Genes 223
- Operons 73
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 487 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -74
Score: 4.5
Sequence: GATGGCACGGACTTTTCAT
Locus tag: DvMF_3071
Name: null
Funciton: type IV pilus assembly PilZ
DvMF_3071
type IV pilus assembly PilZ
Position: -61
Score: 4.3
Sequence: GCTGGCATGGTATTGGCTC
Locus tag: DvMF_0691
Name: null
Funciton: PEP-CTERM system TPR-repeat lipoprotein
Locus tag: DvMF_0690
Name: pss
Funciton: Exopolysaccharide production protein Pss (pss)
Locus tag: DvMF_0689
Name: null
Funciton: polysaccharide export protein, PEP-CTERM sytem-associated
Locus tag: DvMF_0688
Name: null
Funciton: Lipopolysaccharide biosynthesis chain length determinant protein
Locus tag: DvMF_0687
Name: null
Funciton: Protein-tyrosine kinase (EC 2.7.1.112)
Locus tag: DvMF_0686
Name: exeA
Funciton: Secretion ATPase, PEP-CTERM locus subfamily
DvMF_0691
PEP-CTERM system TPR-repeat lipoprotein
DvMF_0690
pss
Exopolysaccharide production protein Pss (pss)
DvMF_0689
polysaccharide export protein, PEP-CTERM sytem-associated
DvMF_0688
Lipopolysaccharide biosynthesis chain length determinant protein
DvMF_0687
Protein-tyrosine kinase (EC 2.7.1.112)
DvMF_0686
exeA
Secretion ATPase, PEP-CTERM locus subfamily
Position: -205
Score: 4.5
Sequence: GATGGCACGAAACTTGTTA
Locus tag: DvMF_1764
Name: null
Funciton: protein of unknown function DUF81
Locus tag: DvMF_1765
Name: null
Funciton: hypothetical membrane protein
Locus tag: DvMF_1766
Name: null
Funciton: putative sigma54 specific transcriptional regulator
Locus tag: DvMF_1767
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1768
Name: null
Funciton: integral membrane sensor signal transduction histidine kinase
Locus tag: DvMF_1769
Name: null
Funciton: response regulator receiver protein
Locus tag: DvMF_1770
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1771
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1772
Name: null
Funciton: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Locus tag: DvMF_1773
Name: null
Funciton: response regulator receiver sensor signal transduction histidine kinase
DvMF_1764
protein of unknown function DUF81
DvMF_1765
hypothetical membrane protein
DvMF_1766
putative sigma54 specific transcriptional regulator
DvMF_1767
hypothetical protein
DvMF_1768
integral membrane sensor signal transduction histidine kinase
DvMF_1769
response regulator receiver protein
DvMF_1770
hypothetical protein
DvMF_1771
hypothetical protein
DvMF_1772
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
DvMF_1773
response regulator receiver sensor signal transduction histidine kinase
Position: -183
Score: 4.2
Sequence: GACGGCATGTCGGTTGCAA
Locus tag: DvMF_1932
Name: dtcP
Funciton: TRAP-type C4-dicarboxylate transport system, periplasmic component
Locus tag: DvMF_1931
Name: dctM
Funciton: TRAP dicarboxylate transporter, DctM subunit
Locus tag: DvMF_1930
Name: null
Funciton: hypothetical protein
DvMF_1932
dtcP
TRAP-type C4-dicarboxylate transport system, periplasmic component
DvMF_1931
dctM
TRAP dicarboxylate transporter, DctM subunit
DvMF_1930
hypothetical protein
Position: -119
Score: 3.8
Sequence: GCAGGCTCATATTTTGCTA
Locus tag: DvMF_1934
Name: null
Funciton: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15)
DvMF_1934
Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15)
Position: -211
Score: 4.6
Sequence: CGTGGCACATGGTTTGCTA
Position: -158
Score: 4.7
Sequence: AATGGCACGCATAGTGCTA
Locus tag: DvMF_2283
Name: null
Funciton: TPR repeat-containing protein
DvMF_2283
TPR repeat-containing protein
Position: -98
Score: 5.2
Sequence: TTTGGCCCCGTCCTTGCTT
Locus tag: DvMF_0321
Name: adh
Funciton: alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
DvMF_0321
adh
alcohol dehydrogenase, iron-containing( EC:1.1.1.1 )
Position: -53
Score: 5.1
Sequence: TCTGGCACGGCGCTTGTTT
Locus tag: DvMF_2106
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2105
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2104
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2103
Name: null
Funciton: TSUP family transporter
Locus tag: DvMF_2102
Name: null
Funciton: universal stress protein
DvMF_2106
hypothetical protein
DvMF_2105
hypothetical protein
DvMF_2104
hypothetical protein
DvMF_2103
TSUP family transporter
DvMF_2102
universal stress protein
Position: -272
Score: 4.5
Sequence: GCTGGCCTGGCGGTTGCTG
Position: -251
Score: 4.4
Sequence: GCTGGCCTGGCGGTTGCAG
Position: -230
Score: 4.5
Sequence: GCTGGCCTGGCGGTTGCTG
Locus tag: DvMF_1800
Name: pspB
Funciton: phage shock protein B
Locus tag: DvMF_1801
Name: pspC
Funciton: Phage shock protein C
DvMF_1800
pspB
phage shock protein B
DvMF_1801
pspC
Phage shock protein C
Position: -60
Score: 5.1
Sequence: GCTGGCACGGTTGCTGCTT
Locus tag: DvMF_1799
Name: pspA
Funciton: Phage shock protein A
DvMF_1799
pspA
Phage shock protein A
Position: -69
Score: 5.1
Sequence: GCTGGCACCGATCTTGCTC
Locus tag: DvMF_0386
Name: null
Funciton: hypothetical protein
DvMF_0386
hypothetical protein
Position: -244
Score: 4.5
Sequence: GCTGGTGCGCTTGTTGCTT
Locus tag: DvMF_2148
Name: zraS
Funciton: Sensor protein of sigma-54-dependent two-component system
Locus tag: DvMF_2149
Name: zraR
Funciton: Two component, sigma54 specific, transcriptional regulator, Fis family
DvMF_2148
zraS
Sensor protein of sigma-54-dependent two-component system
DvMF_2149
zraR
Two component, sigma54 specific, transcriptional regulator, Fis family
Position: -95
Score: 4.5
Sequence: CCGGGCATGCTTCCTGCTC
Locus tag: DvMF_1693
Name: null
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: DvMF_1694
Name: null
Funciton: cytochrome c family protein
Locus tag: DvMF_1695
Name: null
Funciton: Cytochrome B561
DvMF_1693
4Fe-4S ferredoxin iron-sulfur binding domain protein
DvMF_1694
cytochrome c family protein
DvMF_1695
Cytochrome B561
Position: -368
Score: 4.8
Sequence: ACTGGCACACTTCTTGTTG
Locus tag: DvMF_1860
Name: por
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Locus tag: DvMF_1861
Name: lldP
Funciton: L-lactate permease
Locus tag: DvMF_1862
Name: glcD
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Locus tag: DvMF_1863
Name: glcF
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Locus tag: DvMF_1864
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: DvMF_1865
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
Locus tag: DvMF_1866
Name: DVU3031
Funciton: BioD-like N-terminal domain of phosphotransacetylase
Locus tag: DvMF_1867
Name: lldG
Funciton: L-lactate dehydrogenase, hypothetical protein subunit LldG
Locus tag: DvMF_1868
Name: lldEF
Funciton: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
DvMF_1860
por
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
DvMF_1861
lldP
L-lactate permease
DvMF_1862
glcD
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
DvMF_1863
glcF
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
DvMF_1864
pta
Phosphate acetyltransferase (EC 2.3.1.8)
DvMF_1865
ackA
Acetate kinase (EC 2.7.2.1)
DvMF_1866
DVU3031
BioD-like N-terminal domain of phosphotransacetylase
DvMF_1867
lldG
L-lactate dehydrogenase, hypothetical protein subunit LldG
DvMF_1868
lldEF
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
Position: -90
Score: 4.2
Sequence: GTTGGCACGAGGTTTTCAT
Locus tag: DvMF_0213
Name: null
Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: DvMF_0215
Name: null
Funciton: two component, sigma54 specific, transcriptional regulator, Fis family
DvMF_0213
PAS/PAC sensor signal transduction histidine kinase
DvMF_0215
two component, sigma54 specific, transcriptional regulator, Fis family
Position: -253
Score: 4.4
Sequence: GCTTGCACACTACTTGCAT
Locus tag: DvMF_1840
Name: null
Funciton: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)
Locus tag: DvMF_1841
Name: null
Funciton: UDP-N-acetylglucosamine pyrophosphorylase related protein
DvMF_1840
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)
DvMF_1841
UDP-N-acetylglucosamine pyrophosphorylase related protein
Position: -44
Score: 4.7
Sequence: TTTGGAACGGTCCTTGTAA
Locus tag: DvMF_0248
Name: fliK
Funciton: Flagellar hook-length control protein FliK
Locus tag: DvMF_0247
Name: flgD
Funciton: Flagellar basal-body rod modification protein FlgD
Locus tag: DvMF_0246
Name: flgE
Funciton: Flagellar hook protein FlgE
DvMF_0248
fliK
Flagellar hook-length control protein FliK
DvMF_0247
flgD
Flagellar basal-body rod modification protein FlgD
DvMF_0246
flgE
Flagellar hook protein FlgE
Position: -177
Score: 4.6
Sequence: GCTGGCACAGGCTTTGTAT
Locus tag: DvMF_2014
Name: flhA
Funciton: Flagellar biosynthesis pathway, component FlhA
Locus tag: DvMF_2013
Name: flhF
Funciton: Flagellar biosynthesis protein FlhF
Locus tag: DvMF_2012
Name: fleN
Funciton: Flagellar synthesis regulator FleN
Locus tag: DvMF_2011
Name: fliA
Funciton: RNA polymerase, sigma 28 subunit, FliA/WhiG
Locus tag: DvMF_2010
Name: cheY
Funciton: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
Locus tag: DvMF_2009
Name: fliL
Funciton: Flagellar biosynthesis protein FliL
Locus tag: DvMF_2008
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2007
Name: null
Funciton: hypothetical protein
DvMF_2014
flhA
Flagellar biosynthesis pathway, component FlhA
DvMF_2013
flhF
Flagellar biosynthesis protein FlhF
DvMF_2012
fleN
Flagellar synthesis regulator FleN
DvMF_2011
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG
DvMF_2010
cheY
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
DvMF_2009
fliL
Flagellar biosynthesis protein FliL
DvMF_2008
hypothetical protein
DvMF_2007
hypothetical protein
Position: -117
Score: 4.2
Sequence: GTTGGCATCGGCGATGCAT
Locus tag: DvMF_2612
Name: nifV
Funciton: Pyruvate carboxyltransferase
DvMF_2612
nifV
Pyruvate carboxyltransferase
Position: -29
Score: 4
Sequence: GGCGGAACCATCCTTGCAA
Locus tag: DvMF_2528
Name: nifA-2
Funciton: transcriptional regulator, NifA subfamily, Fis Family
DvMF_2528
nifA-2
transcriptional regulator, NifA subfamily, Fis Family
Position: -252
Score: 4.5
Sequence: CCCGGCGTGCTTCTTGCAA
Locus tag: DvMF_0621
Name: null
Funciton: Methyl-accepting chemotaxis protein McpC, putative
Locus tag: DvMF_0620
Name: cheW-3
Funciton: chemotaxis protein CheW
Locus tag: DvMF_0619
Name: cheA-2
Funciton: Signal transduction histidine kinase CheA (EC 2.7.3.-)
DvMF_0621
Methyl-accepting chemotaxis protein McpC, putative
DvMF_0620
cheW-3
chemotaxis protein CheW
DvMF_0619
cheA-2
Signal transduction histidine kinase CheA (EC 2.7.3.-)
Position: -98
Score: 5.3
Sequence: GATGGCACGCTCCTTGCCT
Locus tag: DvMF_0866
Name: amt
Funciton: Ammonium transporter
Locus tag: DvMF_0865
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: DvMF_0864
Name: glnD
Funciton: [Protein-PII] uridylyltransferase (EC 2.7.7.59)
DvMF_0866
amt
Ammonium transporter
DvMF_0865
glnB
Nitrogen regulatory protein P-II
DvMF_0864
glnD
[Protein-PII] uridylyltransferase (EC 2.7.7.59)
Position: -67
Score: 5
Sequence: GCTGGCATTCCCCTTGCTT
Locus tag: DvMF_2067
Name: null
Funciton: hypothetical protein
DvMF_2067
hypothetical protein
Position: -75
Score: 4.8
Sequence: CATGGTCCGTTTCTTGCTT
Locus tag: DvMF_1546
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1545
Name: null
Funciton: hypothetical protein
DvMF_1546
hypothetical protein
DvMF_1545
hypothetical protein
Position: -201
Score: 4.9
Sequence: AGTGGACCGCTTCTTGCTT
Locus tag: DvMF_1590
Name: glnN
Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
DvMF_1590
glnN
Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Position: -272
Score: 4.7
Sequence: GTTGGTCCGCGTCTTGCTC
Locus tag: DvMF_2603
Name: null
Funciton: membrane protein, putative
Locus tag: DvMF_2604
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2605
Name: null
Funciton: UspA domain protein
DvMF_2603
membrane protein, putative
DvMF_2604
hypothetical protein
DvMF_2605
UspA domain protein
Position: -38
Score: 5.3
Sequence: TTTGGCACGGTTCATGCTC
Locus tag: DvMF_1446
Name: lpxC
Funciton: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
DvMF_1446
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)
Position: -128
Score: 5.2
Sequence: GCTGGCACGGCTCGTGCTT
Locus tag: DvMF_1808
Name: flgE
Funciton: Flagellar hook protein FlgE
DvMF_1808
flgE
Flagellar hook protein FlgE
Position: -152
Score: 4.2
Sequence: AATGGCCTGAATGATGCTT
Locus tag: DvMF_3023
Name: null
Funciton: Ammonium transporter
Locus tag: DvMF_3024
Name: null
Funciton: Nitrogen regulatory protein P-II
DvMF_3023
Ammonium transporter
DvMF_3024
Nitrogen regulatory protein P-II
Position: -139
Score: 5.1
Sequence: CTTGGCACGCCGGTTGCTC
Locus tag: DvMF_2147
Name: zraP
Funciton: Zinc resistance-associated protein
DvMF_2147
zraP
Zinc resistance-associated protein
Position: -124
Score: 4.9
Sequence: AATGGCACGGGCTGTGCTT
Locus tag: DvMF_1121
Name: null
Funciton: hypothetical protein
DvMF_1121
hypothetical protein
Position: -79
Score: 4.9
Sequence: CTTGGCACGCGGGTTGCTG
Locus tag: DvMF_2747
Name: null
Funciton: Flp pilus assembly protein, pilin Flp
Locus tag: DvMF_2746
Name: null
Funciton: Flp pilus assembly protein, pilin Flp
Locus tag: DvMF_2745
Name: null
Funciton: Flp pilus assembly protein, pilin Flp
Locus tag: DvMF_2744
Name: null
Funciton: Flp pilus assembly protein, pilin Flp
Locus tag: DvMF_2743
Name: null
Funciton: Type IV prepilin peptidase TadV/CpaA
Locus tag: DvMF_2742
Name: null
Funciton: Flp pilus assembly protein RcpC/CpaB
Locus tag: DvMF_2741
Name: null
Funciton: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
Locus tag: DvMF_2740
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2739
Name: null
Funciton: Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly
Locus tag: DvMF_2738
Name: null
Funciton: type II/IV secretion system protein
Locus tag: DvMF_2737
Name: null
Funciton: Flp pilus assembly protein TadB
Locus tag: DvMF_2736
Name: null
Funciton: Type II/IV secretion system protein TadC, associated with Flp pilus assembly
Locus tag: DvMF_2735
Name: null
Funciton: Flp pilus assembly protein TadD, contains TPR repeat
Locus tag: DvMF_2734
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2733
Name: null
Funciton: Von Willebrand factor type A domain protein, associated with Flp pilus assembly
Locus tag: DvMF_2732
Name: null
Funciton: Similar to TadZ/CpaE, associated with Flp pilus assembly
Locus tag: DvMF_2731
Name: null
Funciton: multi-sensor hybrid histidine kinase
DvMF_2747
Flp pilus assembly protein, pilin Flp
DvMF_2746
Flp pilus assembly protein, pilin Flp
DvMF_2745
Flp pilus assembly protein, pilin Flp
DvMF_2744
Flp pilus assembly protein, pilin Flp
DvMF_2743
Type IV prepilin peptidase TadV/CpaA
DvMF_2742
Flp pilus assembly protein RcpC/CpaB
DvMF_2741
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
DvMF_2740
hypothetical protein
DvMF_2739
Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly
DvMF_2738
type II/IV secretion system protein
DvMF_2737
Flp pilus assembly protein TadB
DvMF_2736
Type II/IV secretion system protein TadC, associated with Flp pilus assembly
DvMF_2735
Flp pilus assembly protein TadD, contains TPR repeat
DvMF_2734
hypothetical protein
DvMF_2733
Von Willebrand factor type A domain protein, associated with Flp pilus assembly
DvMF_2732
Similar to TadZ/CpaE, associated with Flp pilus assembly
DvMF_2731
multi-sensor hybrid histidine kinase
Position: -53
Score: 4.9
Sequence: TCTGGCATCACTCTTGCCT
Locus tag: DvMF_1255
Name: null
Funciton: membrane protein, putative
Locus tag: DvMF_1256
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1257
Name: null
Funciton: conserved hypothetical protein
DvMF_1255
membrane protein, putative
DvMF_1256
hypothetical protein
DvMF_1257
conserved hypothetical protein
Position: -29
Score: 4
Sequence: TATGGCGCGGAAAGTGCTG
Locus tag: DvMF_1509
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1508
Name: null
Funciton: hypothetical protein
DvMF_1509
hypothetical protein
DvMF_1508
hypothetical protein
Position: -63
Score: 5.3
Sequence: CATGGCACGGCCCTTGCTG
Locus tag: DvMF_2785
Name: null
Funciton: methyl-accepting chemotaxis protein
DvMF_2785
methyl-accepting chemotaxis protein
Position: -59
Score: 4.6
Sequence: TTTTGCACGTCACTTGCAT
Locus tag: DvMF_1812
Name: null
Funciton: hypothetical protein
DvMF_1812
hypothetical protein
Position: -48
Score: 5.2
Sequence: CATGGCATGCTTCCTGCTT
Locus tag: DvMF_0828
Name: null
Funciton: Conserved hypothetical protein
DvMF_0828
Conserved hypothetical protein
Position: -132
Score: 4.9
Sequence: CTTGGCACGCCGCATGCTC
Locus tag: DvMF_2578
Name: kdpF
Funciton: K+-transporting ATPase, F subunit
Locus tag: DvMF_2577
Name: null
Funciton: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: DvMF_2576
Name: kdpB
Funciton: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: DvMF_2575
Name: kdpC
Funciton: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: DvMF_2574
Name: kdpD
Funciton: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
Locus tag: DvMF_2573
Name: null
Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: DvMF_2572
Name: null
Funciton: two component, sigma54 specific, transcriptional regulator, Fis family
DvMF_2578
kdpF
K+-transporting ATPase, F subunit
DvMF_2577
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
DvMF_2576
kdpB
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
DvMF_2575
kdpC
Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
DvMF_2574
kdpD
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
DvMF_2573
PAS/PAC sensor signal transduction histidine kinase
DvMF_2572
two component, sigma54 specific, transcriptional regulator, Fis family
Position: -128
Score: 4.6
Sequence: CATGGACCAATTCTTGCTT
Locus tag: DvMF_0509
Name: null
Funciton: GGDEF domain protein
DvMF_0509
GGDEF domain protein
Position: -135
Score: 4.9
Sequence: GCTGGCACGACTCCTGCCT
Locus tag: DvMF_0825
Name: null
Funciton: hypothetical protein
DvMF_0825
hypothetical protein
Position: -63
Score: 3.9
Sequence: TGCGGTACGACTTTTGATA
Locus tag: DvMF_2842
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2841
Name: null
Funciton: response regulator receiver protein
DvMF_2842
hypothetical protein
DvMF_2841
response regulator receiver protein
Position: -183
Score: 4.9
Sequence: CTTGGCGCGGAATTTGCTT
Locus tag: DvMF_0177
Name: mltC
Funciton: Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)
Locus tag: DvMF_0178
Name: null
Funciton: outer membrane chaperone Skp (OmpH)
DvMF_0177
mltC
Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)
DvMF_0178
outer membrane chaperone Skp (OmpH)
Position: -77
Score: 5.2
Sequence: ATTGGCACAGCGCTTGCTT
Locus tag: DvMF_0693
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_0694
Name: null
Funciton: hypothetical protein
DvMF_0693
hypothetical protein
DvMF_0694
hypothetical protein
Position: -197
Score: 5.2
Sequence: TTTGGCATGCGGCTTGCTA
Locus tag: DvMF_2341
Name: null
Funciton: hypothetical membrane protein
Locus tag: DvMF_2342
Name: null
Funciton: hypothetical membrane protein
Locus tag: DvMF_2343
Name: null
Funciton: lipoprotein, putative
Locus tag: DvMF_2344
Name: null
Funciton: lipoprotein, putative
Locus tag: DvMF_2345
Name: null
Funciton: hypothetical protein
DvMF_2341
hypothetical membrane protein
DvMF_2342
hypothetical membrane protein
DvMF_2343
lipoprotein, putative
DvMF_2344
lipoprotein, putative
DvMF_2345
hypothetical protein
Position: -237
Score: 3.9
Sequence: TCCGGCGCATTCCATGCAT
Locus tag: DvMF_1024
Name: null
Funciton: Tfp pilus assembly protein ATPase PilM-like protein
Locus tag: DvMF_1025
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1026
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1027
Name: null
Funciton: Type IV pilus biogenesis protein PilQ
Locus tag: DvMF_1028
Name: gspE
Funciton: Type IV fimbrial assembly, ATPase PilB
Locus tag: DvMF_1029
Name: null
Funciton: Type IV fimbrial assembly protein PilC
Locus tag: DvMF_1030
Name: null
Funciton: Type IV pilin PilA
Locus tag: DvMF_1031
Name: null
Funciton: Twitching motility protein PilT
Locus tag: DvMF_1032
Name: null
Funciton: Type IV pilin PilA
Locus tag: DvMF_1033
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1034
Name: null
Funciton: hypothetical protein
DvMF_1024
Tfp pilus assembly protein ATPase PilM-like protein
DvMF_1025
hypothetical protein
DvMF_1026
hypothetical protein
DvMF_1027
Type IV pilus biogenesis protein PilQ
DvMF_1028
gspE
Type IV fimbrial assembly, ATPase PilB
DvMF_1029
Type IV fimbrial assembly protein PilC
DvMF_1030
Type IV pilin PilA
DvMF_1031
Twitching motility protein PilT
DvMF_1032
Type IV pilin PilA
DvMF_1033
hypothetical protein
DvMF_1034
hypothetical protein
Position: -146
Score: 4.1
Sequence: AACGGCACGGGTCTTGAAG
Locus tag: DvMF_1491
Name: nrfH
Funciton: Cytochrome c nitrite reductase, small subunit NrfH
Locus tag: DvMF_1490
Name: nrfA
Funciton: Cytochrome c nitrite reductase, catalytic subunit NrfA
DvMF_1491
nrfH
Cytochrome c nitrite reductase, small subunit NrfH
DvMF_1490
nrfA
Cytochrome c nitrite reductase, catalytic subunit NrfA
Position: -146
Score: 4.4
Sequence: CGCTGCACGCTTTTTGCTA
Locus tag: DvMF_1325
Name: null
Funciton: Tetratricopeptide domain protein
Locus tag: DvMF_1326
Name: null
Funciton: protein of unknown function DUF52
DvMF_1325
Tetratricopeptide domain protein
DvMF_1326
protein of unknown function DUF52
Position: -68
Score: 4.4
Sequence: GCTGGCATGGGCGATGCAT
Locus tag: DvMF_0574
Name: null
Funciton: hypothetical protein
DvMF_0574
hypothetical protein
Position: -148
Score: 4.1
Sequence: CCTGGCCCTGGCCCTGCTG
Locus tag: DvMF_2524
Name: flgK
Funciton: flagellar hook-associated protein FlgK
Locus tag: DvMF_2525
Name: flgL
Funciton: Flagellar hook-associated protein FlgL
Locus tag: DvMF_2526
Name: csrA
Funciton: carbon storage regulator, CsrA
Locus tag: DvMF_2527
Name: fliW
Funciton: Flagellar assembly factor FliW
DvMF_2524
flgK
flagellar hook-associated protein FlgK
DvMF_2525
flgL
Flagellar hook-associated protein FlgL
DvMF_2526
csrA
carbon storage regulator, CsrA
DvMF_2527
fliW
Flagellar assembly factor FliW
Position: -110
Score: 4.8
Sequence: ACTGGCACGGGGTTTGCCC
Locus tag: DvMF_2613
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: DvMF_2614
Name: glnB-3
Funciton: Nitrogen regulatory protein P-II
Locus tag: DvMF_2615
Name: glnB-2
Funciton: Nitrogen regulatory protein P-II
Locus tag: DvMF_2616
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: DvMF_2617
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: DvMF_2618
Name: DvMF_2618
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: DvMF_2619
Name: null
Funciton: Ferredoxin, 2Fe-2S
Locus tag: DvMF_2620
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: DvMF_2621
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: DvMF_2622
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
DvMF_2613
nifH
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
DvMF_2614
glnB-3
Nitrogen regulatory protein P-II
DvMF_2615
glnB-2
Nitrogen regulatory protein P-II
DvMF_2616
nifD
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
DvMF_2617
nifK
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
DvMF_2618
DvMF_2618
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
DvMF_2619
Ferredoxin, 2Fe-2S
DvMF_2620
nifE
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
DvMF_2621
nifN
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
DvMF_2622
nifB
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Position: -120
Score: 5
Sequence: GTTGGCAAGGCGTTTGCTT
Locus tag: DvMF_2154
Name: ald
Funciton: Alanine dehydrogenase (EC 1.4.1.1)
DvMF_2154
ald
Alanine dehydrogenase (EC 1.4.1.1)
Position: -57
Score: 3.4
Sequence: GGCGGCATCATGTCTGTTC
Locus tag: DvMF_2333
Name: null
Funciton: integral membrane sensor signal transduction histidine kinase
Locus tag: DvMF_2334
Name: null
Funciton: response regulator receiver protein
DvMF_2333
integral membrane sensor signal transduction histidine kinase
DvMF_2334
response regulator receiver protein
Position: -111
Score: 5
Sequence: TTTGGCACAACCGTTGCTA
Locus tag: DvMF_1984
Name: null
Funciton: hypothetical membrane protein
Locus tag: DvMF_1985
Name: null
Funciton: hypothetical membrane protein
DvMF_1984
hypothetical membrane protein
DvMF_1985
hypothetical membrane protein
Position: -38
Score: 4.2
Sequence: CGTGGCGCGCGCCCTGCCT
Locus tag: DvMF_2435
Name: null
Funciton: Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)
Locus tag: DvMF_2436
Name: null
Funciton: Type III secretion spans bacterial envelope protein (YscO)
Locus tag: DvMF_2437
Name: null
Funciton: HpaP protein; Type III secretion protein (YscP)
Locus tag: DvMF_2438
Name: null
Funciton: Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)
Locus tag: DvMF_2439
Name: null
Funciton: Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)
Locus tag: DvMF_2440
Name: null
Funciton: anti-anti-sigma factor
Locus tag: DvMF_2441
Name: rsbW
Funciton: putative anti-sigma regulatory factor, serine/threonine protein kinase
DvMF_2435
Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)
DvMF_2436
Type III secretion spans bacterial envelope protein (YscO)
DvMF_2437
HpaP protein; Type III secretion protein (YscP)
DvMF_2438
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components)
DvMF_2439
Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)
DvMF_2440
anti-anti-sigma factor
DvMF_2441
rsbW
putative anti-sigma regulatory factor, serine/threonine protein kinase
Position: -56
Score: 4.6
Sequence: TTTGGCATCCTTGCTGCAA
Locus tag: DvMF_2420
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2421
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2422
Name: null
Funciton: Type III secretion chaperone protein for YopD (SycD)
Locus tag: DvMF_2423
Name: null
Funciton: Type III secretion host injection protein (YopB)
Locus tag: DvMF_2424
Name: null
Funciton: Type III secretion host injection and negative regulator protein (YopD)
Locus tag: DvMF_2425
Name: null
Funciton: Tir chaperone family protein
Locus tag: DvMF_2426
Name: yscC
Funciton: Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
Locus tag: DvMF_2427
Name: null
Funciton: Type III secretion inner membrane protein (YscD,homologous to flagellar export components)
Locus tag: DvMF_2428
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2429
Name: null
Funciton: Type III secretion system protein, YscF family
Locus tag: DvMF_2430
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2431
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2432
Name: escJ
Funciton: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
Locus tag: DvMF_2433
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2434
Name: sctL
Funciton: type III secretion protein, YopL family putative type III secretion protein
DvMF_2420
hypothetical protein
DvMF_2421
hypothetical protein
DvMF_2422
Type III secretion chaperone protein for YopD (SycD)
DvMF_2423
Type III secretion host injection protein (YopB)
DvMF_2424
Type III secretion host injection and negative regulator protein (YopD)
DvMF_2425
Tir chaperone family protein
DvMF_2426
yscC
Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)
DvMF_2427
Type III secretion inner membrane protein (YscD,homologous to flagellar export components)
DvMF_2428
hypothetical protein
DvMF_2429
Type III secretion system protein, YscF family
DvMF_2430
hypothetical protein
DvMF_2431
hypothetical protein
DvMF_2432
escJ
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
DvMF_2433
hypothetical protein
DvMF_2434
sctL
type III secretion protein, YopL family putative type III secretion protein
Position: -85
Score: 5.3
Sequence: TTTGGCACGCCTCTTGATT
Locus tag: DvMF_1363
Name: null
Funciton: membrane protein, putative
Locus tag: DvMF_1362
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_1361
Name: null
Funciton: PAS/PAC sensor signal transduction histidine kinase
Locus tag: DvMF_1360
Name: null
Funciton: Two component, sigma54 specific, transcriptional regulator, Fis family
DvMF_1363
membrane protein, putative
DvMF_1362
hypothetical protein
DvMF_1361
PAS/PAC sensor signal transduction histidine kinase
DvMF_1360
Two component, sigma54 specific, transcriptional regulator, Fis family
Position: -400
Score: 5.1
Sequence: TCTGGCACGGGTTGTGCTT
Locus tag: DvMF_3011
Name: null
Funciton: metal dependent phosphohydrolase
DvMF_3011
metal dependent phosphohydrolase
Position: -38
Score: 5.1
Sequence: CATGGCAGGGTTCTTGCTT
Locus tag: DvMF_0905
Name: null
Funciton: hypothetical protein
DvMF_0905
hypothetical protein
Position: -58
Score: 4.5
Sequence: TGTGGCCCATGCCTTGCAA
Locus tag: DvMF_2517
Name: flgF
Funciton: Flagellar basal-body rod protein FlgF
DvMF_2517
flgF
Flagellar basal-body rod protein FlgF
Position: -89
Score: 4.3
Sequence: TCCGGCATCCGGTTTGCAA
Locus tag: DvMF_2518
Name: flgG
Funciton: Flagellar basal-body rod protein FlgG
Locus tag: DvMF_2519
Name: flgA
Funciton: Flagellar basal-body P-ring formation protein FlgA
Locus tag: DvMF_2520
Name: flgH
Funciton: Flagellar L-ring protein FlgH
DvMF_2518
flgG
Flagellar basal-body rod protein FlgG
DvMF_2519
flgA
Flagellar basal-body P-ring formation protein FlgA
DvMF_2520
flgH
Flagellar L-ring protein FlgH
Position: -220
Score: 4.4
Sequence: ACTGGCACGGTGTTGGCAA
Position: -150
Score: 3.8
Sequence: TGCGGAATGCTTGTTTCTT
Locus tag: DvMF_2521
Name: flgI
Funciton: Flagellar P-ring protein FlgI
Locus tag: DvMF_2522
Name: flgJ
Funciton: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
Locus tag: DvMF_2523
Name: DVU0518
Funciton: FlgN family protein
DvMF_2521
flgI
Flagellar P-ring protein FlgI
DvMF_2522
flgJ
Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
DvMF_2523
DVU0518
FlgN family protein
Position: -29
Score: 5.1
Sequence: CATGGCCCGCATCTTGCTG
Locus tag: DvMF_2016
Name: fliR
Funciton: Flagellar biosynthesis protein FliR
Locus tag: DvMF_2015
Name: flhB
Funciton: Flagellar biosynthesis protein FlhB
DvMF_2016
fliR
Flagellar biosynthesis protein FliR
DvMF_2015
flhB
Flagellar biosynthesis protein FlhB
Position: -119
Score: 4.2
Sequence: GGCGGCACGCTTGTTGTAA
Locus tag: DvMF_2406
Name: null
Funciton: hypothetical protein
DvMF_2406
hypothetical protein
Position: -63
Score: 4
Sequence: CATGGCGTGATTCTCGCAT
Locus tag: DvMF_2419
Name: null
Funciton: Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
Locus tag: DvMF_2418
Name: sycN
Funciton: Type III secretion chaperone SycN
Locus tag: DvMF_2417
Name: null
Funciton: hypothetical protein
Locus tag: DvMF_2416
Name: null
Funciton: Chaperone protein YscY (Yop proteins translocation protein Y)
Locus tag: DvMF_2415
Name: sctV
Funciton: Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)
Locus tag: DvMF_2414
Name: invX
Funciton: Type III secretion inner membrane protein (YscS,homologous to flagellar export components)
Locus tag: DvMF_2413
Name: escT
Funciton: Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)
Locus tag: DvMF_2412
Name: flhB
Funciton: Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)
DvMF_2419
Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) / Type III secretion outermembrane negative regulator of secretion (TyeA)
DvMF_2418
sycN
Type III secretion chaperone SycN
DvMF_2417
hypothetical protein
DvMF_2416
Chaperone protein YscY (Yop proteins translocation protein Y)
DvMF_2415
sctV
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)
DvMF_2414
invX
Type III secretion inner membrane protein (YscS,homologous to flagellar export components)
DvMF_2413
escT
Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)
DvMF_2412
flhB
Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)
Position: -59
Score: 4.1
Sequence: ACCGGCCCGCCCCCTGCCG
Locus tag: DvMF_2411
Name: flrC
Funciton: sigma54 specific transcriptional regulator, Fis family
Locus tag: DvMF_2410
Name: null
Funciton: protein serine/threonine phosphatase
DvMF_2411
flrC
sigma54 specific transcriptional regulator, Fis family
DvMF_2410
protein serine/threonine phosphatase
Position: -237
Score: 4.4
Sequence: CTTGGCGTTCATCTTGCAT
Locus tag: DvMF_1396
Name: fliM
Funciton: Flagellar motor switch protein FliM
DvMF_1396
fliM
Flagellar motor switch protein FliM
Position: -54
Score: 4.9
Sequence: GTTGGCACCAACATTGCTT
Locus tag: DvMF_0244
Name: flaB1
Funciton: Flagellin (flaB1)
DvMF_0244
flaB1
Flagellin (flaB1)
Position: -71
Score: 4.7
Sequence: CTCGGCAAGGCTCTTGCAT
Locus tag: DvMF_1856
Name: null
Funciton: hypothetical protein
DvMF_1856
hypothetical protein
Position: -93
Score: 4.8
Sequence: TTCGGCCCGGTATTTGCTA
Locus tag: DvMF_1393
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: DvMF_1394
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: DvMF_1395
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
DvMF_1393
fliJ
Flagellar biosynthesis chaperone FliJ
DvMF_1394
flbB
Flagellar protein FlbB
DvMF_1395
truA
tRNA pseudouridine synthase A (EC 4.2.1.70)
Position: -106
Score: 4.8
Sequence: GCTGGAACACCTCTTGCTG
Locus tag: DvMF_2284
Name: flgB
Funciton: Flagellar basal-body rod protein FlgB
Locus tag: DvMF_2285
Name: flgC
Funciton: Flagellar basal-body rod protein FlgC
Locus tag: DvMF_2286
Name: fliE
Funciton: Flagellar hook-basal body complex protein FliE
DvMF_2284
flgB
Flagellar basal-body rod protein FlgB
DvMF_2285
flgC
Flagellar basal-body rod protein FlgC
DvMF_2286
fliE
Flagellar hook-basal body complex protein FliE
Position: -127
Score: 4.7
Sequence: TACGGCACCATTCTTGCTG
Locus tag: DvMF_2906
Name: null
Funciton: lipoprotein, putative
DvMF_2906
lipoprotein, putative
Position: -73
Score: 4.7
Sequence: TCTGGCACCAGCCTTGCAG
Locus tag: DvMF_2912
Name: fliD
Funciton: Flagellar hook-associated protein FliD
Locus tag: DvMF_2911
Name: fliS
Funciton: Flagellin-specific chaperone FliS
DvMF_2912
fliD
Flagellar hook-associated protein FliD
DvMF_2911
fliS
Flagellin-specific chaperone FliS
Position: -338
Score: 4
Sequence: TGCGGCATGAACCATGCAG
Locus tag: DvMF_2405
Name: null
Funciton: Type III secretion chaperone, CesT family
DvMF_2405
Type III secretion chaperone, CesT family
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