Regulog PerR - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Peroxide stress response |
| Effector: | |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - FUR
- By pathway - Peroxide stress response
| Genome | Genes | Operons |
|---|---|---|
| Desulfovibrio vulgaris Hildenborough | 6 | 4 |
| Desulfovibrio vulgaris str. Miyazaki F | 3 | 3 |
| Desulfovibrio desulfuricans G20 | 4 | 4 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | 6 | 4 |
| Desulfovibrio piger ATCC 29098 | 6 | 4 |
| Desulfovibrio salexigens DSM 2638 | 8 | 3 |
| Desulfovibrio magneticus RS-1 | ||
| Lawsonia intracellularis PHE/MN1-00 | ||
| Desulfomicrobium baculatum DSM 4028 | 4 | 4 |
| Desulfohalobium retbaense DSM 5692 | 3 | 3 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| ahpC |
*
Desulfovibrio vulgaris Hildenborough Site: position = -117 score = 5.35343 sequence = CACAGGAATGATTCCTGTT Gene: DVU2247: Alkyl hydroperoxide reductase subunit C-like protein |
|
|
|
|
|
|
|
*
Desulfomicrobium baculatum DSM 4028 Site: position = -69 score = 6.00443 sequence = AATAGGAATAATTACTGAT Gene: Dbac_1143: Alkyl hydroperoxide reductase subunit C-like protein |
|
Alkyl hydroperoxide reductase subunit C-like protein |
| CRON 2. | |||||||||||
| DVU0772 |
*
Desulfovibrio vulgaris Hildenborough Site: position = -125 score = 5.76404 sequence = ATCAGTAATAGTTATTGTT Gene: DVU0772: conserved hypothetical protein |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -252 score = 4.83061 sequence = AATGGTAATTGTTACTGTG Gene: DvMF_2834: conserved hypothetical protein |
*
Desulfovibrio desulfuricans G20 Site: position = -135 score = 5.85966 sequence = AATAAGAATTGTTACTATT Gene: Dde_1143: conserved hypothetical protein |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -44 score = 5.17135 sequence = GTCAAGAATGATTATTGTT Gene: Ddes_1704: conserved hypothetical protein |
*
Desulfovibrio piger ATCC 29098 Site: position = -31 score = 5.06855 sequence = ATTGAGAATCATTACTATT Gene: DESPIG_01431: conserved hypothetical protein |
*
Desulfovibrio salexigens DSM 2638 Site: position = -78 score = 5.95509 sequence = AATAGTAATTGTTATTATT Gene: Desal_1471: conserved hypothetical protein |
Gene: DMR_39630: conserved hypothetical protein |
|
*
Desulfomicrobium baculatum DSM 4028 Site: position = -49 score = 5.65336 sequence = TATAGTAATTGTTATTAAT Gene: Dbac_0283: conserved hypothetical protein |
*
Desulfohalobium retbaense DSM 5692 Site: position = -53 score = 5.67157 sequence = GATAGGAATAATTATTATT Gene: Dret_0248: conserved hypothetical protein |
conserved hypothetical protein |
| CRON 3. | |||||||||||
| perR |
*
Desulfovibrio vulgaris Hildenborough Site: position = -37 score = 5.49663 sequence = ATCAGTAATTGTTACTGGT Gene: DVU3095: Peroxide stress regulator PerR, FUR family |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -35 score = 5.17639 sequence = AACAGTAATCATTACCAAT Gene: DvMF_2366: Peroxide stress regulator PerR, FUR family |
*
Desulfovibrio desulfuricans G20 Site: position = -40 score = 5.54568 sequence = TTTAGGAATGGTTATTATT Gene: Dde_3674: Peroxide stress regulator PerR, FUR family |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -33 score = 4.81835 sequence = AACAGTAATTTTTACTATC Gene: Ddes_1388: Peroxide stress regulator PerR, FUR family |
*
Desulfovibrio piger ATCC 29098 Site: position = -7 score = 4.70767 sequence = AATAGTAATGTTTATTAAA Gene: DESPIG_00983: Peroxide stress regulator PerR, FUR family |
*
Desulfovibrio salexigens DSM 2638 Site: position = -38 score = 4.59821 sequence = AACGAGAACTATTACTAGT Gene: Desal_0090: Peroxide stress regulator PerR, FUR family |
|
|
Gene: Dbac_2513: Peroxide stress regulator PerR, FUR family |
*
Desulfohalobium retbaense DSM 5692 Site: position = -39 score = 5.0314 sequence = TATAGTAATAATTATCAAT Gene: Dret_0141: Peroxide stress regulator PerR, FUR family |
Peroxide stress regulator PerR, FUR family |
| rbr |
Gene: DVU3094: Rubrerythrin |
Gene: DvMF_2367: Rubrerythrin |
*
Desulfovibrio desulfuricans G20 Site: position = -90 score = 5.16511 sequence = ATCAGGAATAATTATTGAC Gene: Dde_1222: Rubrerythrin |
Gene: Ddes_0633: Rubrerythrin |
Gene: DESPIG_01377: Rubrerythrin |
Gene: Desal_0089: Rubrerythrin |
Gene: DMR_08470: Rubrerythrin |
Gene: LI0696: Rubrerythrin |
*
Desulfomicrobium baculatum DSM 4028 Site: position = -79 score = 5.34933 sequence = ATCAAGAATAATTCTTAAT Gene: Dbac_3459: Rubrerythrin |
*
Desulfohalobium retbaense DSM 5692 Site: position = -49 score = 4.8778 sequence = AATCGTAACCATTGTTATT Gene: Dret_1205: Rubrerythrin |
Rubrerythrin |
| rbO |
Gene: DVU3183: Desulfoferrodoxin |
Gene: DvMF_2481: Desulfoferrodoxin |
Gene: Dde_3193: Desulfoferrodoxin |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -179 score = 4.97752 sequence = ATTGATAATAATTATTGAT Gene: Ddes_2010: Desulfoferrodoxin |
*
Desulfovibrio piger ATCC 29098 Site: position = -143 score = 5.12993 sequence = ATTAAGAAAAATTACTATT Gene: DESPIG_02487: Desulfoferrodoxin |
Gene: Desal_0088: Desulfoferrodoxin |
Gene: DMR_17610: Desulfoferrodoxin |
Gene: LI0273: Desulfoferrodoxin |
Gene: Dbac_2514: Desulfoferrodoxin |
Gene: Dret_0140: Desulfoferrodoxin |
Desulfoferrodoxin |
| rdl |
Gene: DVU3093: Rubredoxin-type Fe(Cys)4 protein |
Gene: DvMF_2368: Rubredoxin-type Fe(Cys)4 protein |
|
Gene: Ddes_1386: Rubredoxin-type Fe(Cys)4 protein |
Gene: DESPIG_00984: Rubredoxin-type Fe(Cys)4 protein |
Gene: Desal_0087: Rubredoxin-type Fe(Cys)4 protein |
Gene: DMR_19810: Rubredoxin-type Fe(Cys)4 protein |
Gene: LI0697: Rubredoxin-type Fe(Cys)4 protein |
|
|
Rubredoxin-type Fe(Cys)4 protein |
| rub |
Gene: DVU3184: rubredoxin |
Gene: DvMF_2480: rubredoxin |
Gene: Dde_3194: rubredoxin |
|
|
Gene: Desal_0086: rubredoxin |
Gene: DMR_35860: rubredoxin |
|
Gene: Dbac_2515: rubredoxin |
Gene: Dret_0139: rubredoxin |
rubredoxin |
| roO |
Gene: DVU3185: rubredoxin-oxygen oxidoreductase |
|
Gene: Dde_3195: rubredoxin-oxygen oxidoreductase |
Gene: Ddes_2012: rubredoxin-oxygen oxidoreductase |
|
Gene: Desal_0085: rubredoxin-oxygen oxidoreductase |
Gene: DMR_35870: rubredoxin-oxygen oxidoreductase |
Gene: LI0274: rubredoxin-oxygen oxidoreductase |
Gene: Dbac_2516: rubredoxin-oxygen oxidoreductase |
Gene: Dret_0138: rubredoxin-oxygen oxidoreductase |
rubredoxin-oxygen oxidoreductase |
| Ddes_2011 |
|
|
|
Gene: Ddes_2011: Rubredoxin-type Fe(Cys)4 protein |
Gene: DESPIG_02486: Rubredoxin-type Fe(Cys)4 protein |
|
|
|
|
|
Rubredoxin-type Fe(Cys)4 protein |
| CRON 4. | |||||||||||
| rbr2 |
*
Desulfovibrio vulgaris Hildenborough Site: position = -45 score = 5.8584 sequence = AATAGGAATCGTTCCTGTT Gene: DVU2318: Rubrerythrin |
*
Desulfovibrio vulgaris str. Miyazaki F Site: position = -57 score = 5.17173 sequence = AACAGGAATTGTTCCTGAC Gene: DvMF_3175: Rubrerythrin |
*
Desulfovibrio desulfuricans G20 Site: position = -77 score = 5.98474 sequence = AATAGGAATCGTTACTGAT Gene: Dde_1320: Rubrerythrin |
*
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -56 score = 6.00443 sequence = AATAGGAATTGTTATTGAT Gene: Ddes_0897: Rubrerythrin |
*
Desulfovibrio piger ATCC 29098 Site: position = -64 score = 5.76737 sequence = AACAGGAATAGTTCCTGAT Gene: DESPIG_02517: Rubrerythrin |
*
Desulfovibrio salexigens DSM 2638 Site: position = -91 score = 5.95842 sequence = AATAGGAATCGTTACTAAT Gene: Desal_2708: Rubrerythrin |
|
|
*
Desulfomicrobium baculatum DSM 4028 Site: position = -45 score = 4.70063 sequence = GATGAGAATTATTCCTGAT Gene: Dbac_2474: Rubrerythrin |
|
Rubrerythrin |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |