Regulog PerR - Desulfovibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor
Biological process:	Peroxide stress response
Effector:
Phylum:	Proteobacteria/delta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 29 sites [see more]

Member of regulog collections

By taxonomy - Desulfovibrionales
By TF family - FUR
By pathway - Peroxide stress response

Statistics of regulated genes
Genome	Genes	Operons
Desulfovibrio vulgaris Hildenborough	6	4
Desulfovibrio vulgaris str. Miyazaki F	3	3
Desulfovibrio desulfuricans G20	4	4
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	6	4
Desulfovibrio piger ATCC 29098	6	4
Desulfovibrio salexigens DSM 2638	8	3
Desulfovibrio magneticus RS-1
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028	4	4
Desulfohalobium retbaense DSM 5692	3	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
ahpC	* Desulfovibrio vulgaris Hildenborough Site: position = -117 score = 5.35343 sequence = CACAGGAATGATTCCTGTT Gene: DVU2247: Alkyl hydroperoxide reductase subunit C-like protein	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	* Desulfomicrobium baculatum DSM 4028 Site: position = -69 score = 6.00443 sequence = AATAGGAATAATTACTGAT Gene: Dbac_1143: Alkyl hydroperoxide reductase subunit C-like protein	Desulfohalobium retbaense DSM 5692	Alkyl hydroperoxide reductase subunit C-like protein

CRON 2.
DVU0772	* Desulfovibrio vulgaris Hildenborough Site: position = -125 score = 5.76404 sequence = ATCAGTAATAGTTATTGTT Gene: DVU0772: conserved hypothetical protein	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -252 score = 4.83061 sequence = AATGGTAATTGTTACTGTG Gene: DvMF_2834: conserved hypothetical protein	* Desulfovibrio desulfuricans G20 Site: position = -135 score = 5.85966 sequence = AATAAGAATTGTTACTATT Gene: Dde_1143: conserved hypothetical protein	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -44 score = 5.17135 sequence = GTCAAGAATGATTATTGTT Gene: Ddes_1704: conserved hypothetical protein	* Desulfovibrio piger ATCC 29098 Site: position = -31 score = 5.06855 sequence = ATTGAGAATCATTACTATT Gene: DESPIG_01431: conserved hypothetical protein	* Desulfovibrio salexigens DSM 2638 Site: position = -78 score = 5.95509 sequence = AATAGTAATTGTTATTATT Gene: Desal_1471: conserved hypothetical protein	Desulfovibrio magneticus RS-1 Gene: DMR_39630: conserved hypothetical protein	Lawsonia intracellularis PHE/MN1-00	* Desulfomicrobium baculatum DSM 4028 Site: position = -49 score = 5.65336 sequence = TATAGTAATTGTTATTAAT Gene: Dbac_0283: conserved hypothetical protein	* Desulfohalobium retbaense DSM 5692 Site: position = -53 score = 5.67157 sequence = GATAGGAATAATTATTATT Gene: Dret_0248: conserved hypothetical protein	conserved hypothetical protein

CRON 3.
perR	* Desulfovibrio vulgaris Hildenborough Site: position = -37 score = 5.49663 sequence = ATCAGTAATTGTTACTGGT Gene: DVU3095: Peroxide stress regulator PerR, FUR family	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -35 score = 5.17639 sequence = AACAGTAATCATTACCAAT Gene: DvMF_2366: Peroxide stress regulator PerR, FUR family	* Desulfovibrio desulfuricans G20 Site: position = -40 score = 5.54568 sequence = TTTAGGAATGGTTATTATT Gene: Dde_3674: Peroxide stress regulator PerR, FUR family	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -33 score = 4.81835 sequence = AACAGTAATTTTTACTATC Gene: Ddes_1388: Peroxide stress regulator PerR, FUR family	* Desulfovibrio piger ATCC 29098 Site: position = -7 score = 4.70767 sequence = AATAGTAATGTTTATTAAA Gene: DESPIG_00983: Peroxide stress regulator PerR, FUR family	* Desulfovibrio salexigens DSM 2638 Site: position = -38 score = 4.59821 sequence = AACGAGAACTATTACTAGT Gene: Desal_0090: Peroxide stress regulator PerR, FUR family	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2513: Peroxide stress regulator PerR, FUR family	* Desulfohalobium retbaense DSM 5692 Site: position = -39 score = 5.0314 sequence = TATAGTAATAATTATCAAT Gene: Dret_0141: Peroxide stress regulator PerR, FUR family	Peroxide stress regulator PerR, FUR family
rbr	Desulfovibrio vulgaris Hildenborough Gene: DVU3094: Rubrerythrin	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2367: Rubrerythrin	* Desulfovibrio desulfuricans G20 Site: position = -90 score = 5.16511 sequence = ATCAGGAATAATTATTGAC Gene: Dde_1222: Rubrerythrin	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_0633: Rubrerythrin	Desulfovibrio piger ATCC 29098 Gene: DESPIG_01377: Rubrerythrin	Desulfovibrio salexigens DSM 2638 Gene: Desal_0089: Rubrerythrin	Desulfovibrio magneticus RS-1 Gene: DMR_08470: Rubrerythrin	Lawsonia intracellularis PHE/MN1-00 Gene: LI0696: Rubrerythrin	* Desulfomicrobium baculatum DSM 4028 Site: position = -79 score = 5.34933 sequence = ATCAAGAATAATTCTTAAT Gene: Dbac_3459: Rubrerythrin	* Desulfohalobium retbaense DSM 5692 Site: position = -49 score = 4.8778 sequence = AATCGTAACCATTGTTATT Gene: Dret_1205: Rubrerythrin	Rubrerythrin
rbO	Desulfovibrio vulgaris Hildenborough Gene: DVU3183: Desulfoferrodoxin	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2481: Desulfoferrodoxin	Desulfovibrio desulfuricans G20 Gene: Dde_3193: Desulfoferrodoxin	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -179 score = 4.97752 sequence = ATTGATAATAATTATTGAT Gene: Ddes_2010: Desulfoferrodoxin	* Desulfovibrio piger ATCC 29098 Site: position = -143 score = 5.12993 sequence = ATTAAGAAAAATTACTATT Gene: DESPIG_02487: Desulfoferrodoxin	Desulfovibrio salexigens DSM 2638 Gene: Desal_0088: Desulfoferrodoxin	Desulfovibrio magneticus RS-1 Gene: DMR_17610: Desulfoferrodoxin	Lawsonia intracellularis PHE/MN1-00 Gene: LI0273: Desulfoferrodoxin	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2514: Desulfoferrodoxin	Desulfohalobium retbaense DSM 5692 Gene: Dret_0140: Desulfoferrodoxin	Desulfoferrodoxin
rdl	Desulfovibrio vulgaris Hildenborough Gene: DVU3093: Rubredoxin-type Fe(Cys)4 protein	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2368: Rubredoxin-type Fe(Cys)4 protein	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_1386: Rubredoxin-type Fe(Cys)4 protein	Desulfovibrio piger ATCC 29098 Gene: DESPIG_00984: Rubredoxin-type Fe(Cys)4 protein	Desulfovibrio salexigens DSM 2638 Gene: Desal_0087: Rubredoxin-type Fe(Cys)4 protein	Desulfovibrio magneticus RS-1 Gene: DMR_19810: Rubredoxin-type Fe(Cys)4 protein	Lawsonia intracellularis PHE/MN1-00 Gene: LI0697: Rubredoxin-type Fe(Cys)4 protein	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Rubredoxin-type Fe(Cys)4 protein
rub	Desulfovibrio vulgaris Hildenborough Gene: DVU3184: rubredoxin	Desulfovibrio vulgaris str. Miyazaki F Gene: DvMF_2480: rubredoxin	Desulfovibrio desulfuricans G20 Gene: Dde_3194: rubredoxin	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_0086: rubredoxin	Desulfovibrio magneticus RS-1 Gene: DMR_35860: rubredoxin	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2515: rubredoxin	Desulfohalobium retbaense DSM 5692 Gene: Dret_0139: rubredoxin	rubredoxin
roO	Desulfovibrio vulgaris Hildenborough Gene: DVU3185: rubredoxin-oxygen oxidoreductase	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20 Gene: Dde_3195: rubredoxin-oxygen oxidoreductase	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2012: rubredoxin-oxygen oxidoreductase	Desulfovibrio piger ATCC 29098	Desulfovibrio salexigens DSM 2638 Gene: Desal_0085: rubredoxin-oxygen oxidoreductase	Desulfovibrio magneticus RS-1 Gene: DMR_35870: rubredoxin-oxygen oxidoreductase	Lawsonia intracellularis PHE/MN1-00 Gene: LI0274: rubredoxin-oxygen oxidoreductase	Desulfomicrobium baculatum DSM 4028 Gene: Dbac_2516: rubredoxin-oxygen oxidoreductase	Desulfohalobium retbaense DSM 5692 Gene: Dret_0138: rubredoxin-oxygen oxidoreductase	rubredoxin-oxygen oxidoreductase
Ddes_2011	Desulfovibrio vulgaris Hildenborough	Desulfovibrio vulgaris str. Miyazaki F	Desulfovibrio desulfuricans G20	Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Gene: Ddes_2011: Rubredoxin-type Fe(Cys)4 protein	Desulfovibrio piger ATCC 29098 Gene: DESPIG_02486: Rubredoxin-type Fe(Cys)4 protein	Desulfovibrio salexigens DSM 2638	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	Desulfomicrobium baculatum DSM 4028	Desulfohalobium retbaense DSM 5692	Rubredoxin-type Fe(Cys)4 protein

CRON 4.
rbr2	* Desulfovibrio vulgaris Hildenborough Site: position = -45 score = 5.8584 sequence = AATAGGAATCGTTCCTGTT Gene: DVU2318: Rubrerythrin	* Desulfovibrio vulgaris str. Miyazaki F Site: position = -57 score = 5.17173 sequence = AACAGGAATTGTTCCTGAC Gene: DvMF_3175: Rubrerythrin	* Desulfovibrio desulfuricans G20 Site: position = -77 score = 5.98474 sequence = AATAGGAATCGTTACTGAT Gene: Dde_1320: Rubrerythrin	* Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 Site: position = -56 score = 6.00443 sequence = AATAGGAATTGTTATTGAT Gene: Ddes_0897: Rubrerythrin	* Desulfovibrio piger ATCC 29098 Site: position = -64 score = 5.76737 sequence = AACAGGAATAGTTCCTGAT Gene: DESPIG_02517: Rubrerythrin	* Desulfovibrio salexigens DSM 2638 Site: position = -91 score = 5.95842 sequence = AATAGGAATCGTTACTAAT Gene: Desal_2708: Rubrerythrin	Desulfovibrio magneticus RS-1	Lawsonia intracellularis PHE/MN1-00	* Desulfomicrobium baculatum DSM 4028 Site: position = -45 score = 4.70063 sequence = GATGAGAATTATTCCTGAT Gene: Dbac_2474: Rubrerythrin	Desulfohalobium retbaense DSM 5692	Rubrerythrin

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PerR - Desulfovibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --