Regulog DVUA0057 - Desulfovibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | |
| Biological process: | Biofilm formation |
| Effector: | |
| Phylum: | Proteobacteria/Delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfovibrionales
- By TF family - Fis
- By pathway - Biofilm formation
| Genome | Genes | Operons |
|---|---|---|
| Desulfohalobium retbaense DSM 5692 | ||
| Desulfomicrobium baculatum DSM 4028 | 5 | 4 |
| Desulfovibrio desulfuricans G20 | 4 | 4 |
| Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 | ||
| Desulfovibrio magneticus RS-1 | ||
| Desulfovibrio piger ATCC 29098 | ||
| Desulfovibrio salexigens DSM 2638 | 2 | 1 |
| Desulfovibrio vulgaris Hildenborough | 8 | 7 |
| Desulfovibrio vulgaris str. Miyazaki F | 5 | 4 |
| Lawsonia intracellularis PHE/MN1-00 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| DVU1152 |
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Desulfovibrio vulgaris Hildenborough Site: position = -421 score = 4.19931 sequence = TGTCGACTGTCTTTACA Site: position = -343 score = 4.52182 sequence = TGTCGGAAGACCTTACA Gene: DVU1152: hypothetical protein |
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hypothetical protein |
| CRON 2. | |||||||||||
| DVUA0030 |
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Desulfovibrio vulgaris Hildenborough Site: position = -540 score = 4.59053 sequence = TGTTGCGTTTTCCGACA Site: position = -560 score = 4.59182 sequence = TGTTGCCTTATCCGACA Gene: DVUA0030: hypothetical protein |
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hypothetical protein |
| CRON 3. | |||||||||||
| DVU0133 |
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Desulfomicrobium baculatum DSM 4028 Site: position = -328 score = 4.24657 sequence = TGTCGGAATGCCCGGCA Gene: Dbac_0315: protein of unknown function DUF81 |
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Gene: Ddes_0357: protein of unknown function DUF81 |
Gene: DMR_16160: protein of unknown function DUF81 |
Gene: DESPIG_02269: protein of unknown function DUF81 |
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Desulfovibrio salexigens DSM 2638 Site: position = -283 score = 4.18291 sequence = TGTCAAAATGCCCGGCA Gene: Desal_2192: protein of unknown function DUF81 |
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Desulfovibrio vulgaris Hildenborough Site: position = -442 score = 4.97006 sequence = TGTAAAAAAAGCTGACA Gene: DVU0132: protein of unknown function DUF81 |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -465 score = 4.26797 sequence = CGTAAAAAAAGCTGACA Gene: DvMF_1984: protein of unknown function DUF81 |
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protein of unknown function DUF81 |
| DVU0132 |
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Gene: Dbac_0316: hypothetical membrane protein |
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Gene: Ddes_0356: hypothetical membrane protein |
Gene: DMR_16150: hypothetical membrane protein |
Gene: DESPIG_02268: hypothetical membrane protein |
Gene: Desal_2191: hypothetical membrane protein |
Gene: DVU0133: hypothetical membrane protein |
Gene: DvMF_1985: hypothetical membrane protein |
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hypothetical membrane protein |
| CRON 4. | |||||||||||
| DVUA0036 |
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Desulfomicrobium baculatum DSM 4028 Site: position = -549 score = 5.05996 sequence = TGTAAGTTTTTTCGACA Gene: Dbac_2224: PEP-CTERM system TPR-repeat lipoprotein |
Gene: Dde_0828: PEP-CTERM system TPR-repeat lipoprotein |
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Desulfovibrio vulgaris Hildenborough Site: position = -194 score = 5.24061 sequence = TGTCGGGTTTTCCGACA Site: position = -213 score = 4.52997 sequence = TGTCGGACAGGCTTACA Gene: DVUA0036: PEP-CTERM system TPR-repeat lipoprotein |
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Desulfovibrio vulgaris str. Miyazaki F Site: position = -524 score = 5.41496 sequence = TGTCGGATTTTCCGACA Site: position = -543 score = 4.2662 sequence = TGTCGAGAGAATTTACA Gene: DvMF_0691: PEP-CTERM system TPR-repeat lipoprotein |
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PEP-CTERM system TPR-repeat lipoprotein |
| CRON 5. | |||||||||||
| Dbac_2232 |
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Desulfomicrobium baculatum DSM 4028 Site: position = -142 score = 5.34313 sequence = TGTCGGATAATCTTACA Gene: Dbac_2232: protein of unknown function DUF1555 |
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protein of unknown function DUF1555 |
| CRON 6. | |||||||||||
| DVUA0089 |
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Desulfovibrio vulgaris Hildenborough Site: position = -108 score = 4.88561 sequence = TGTAAGGTTTCTCGACA Gene: DVUA0089: hypothetical protein |
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hypothetical protein |
| CRON 7. | |||||||||||
| DVUA0031 |
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*2
Desulfomicrobium baculatum DSM 4028 Site: position = -139 score = 4.78391 sequence = TGTCGGAGAACTTTACA Gene: Dbac_2235: protein of unknown function DUF1555 Gene: Dbac_2231: protein of unknown function DUF1555 |
*4
Desulfovibrio desulfuricans G20 Site: position = -229 score = 4.6115 sequence = TGTAATTATAATCGACA Site: position = -147 score = 4.72757 sequence = TGTCGCTTTTTTTTACA Site: position = -248 score = 4.48565 sequence = TGTCAGGTATTTTTACT Gene: Dde_2510: protein of unknown function DUF1555 Site: position = -158 score = 5.05996 sequence = TGTCGGATTTATTTACA Gene: Dde_2509: protein of unknown function DUF1555 Site: position = -155 score = 4.67423 sequence = TGTCGAAAAGTATTACA Gene: Dde_2507: protein of unknown function DUF1555 Site: position = -274 score = 4.17953 sequence = TGTCGGAACTCATTACA Site: position = -167 score = 5.17825 sequence = TGTCGACTTATCTGACA Gene: Dde_0404: protein of unknown function DUF1555 |
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*2
Desulfovibrio vulgaris Hildenborough Site: position = -97 score = 4.82455 sequence = TGTCGGAGAACCTTACA Gene: DVUA0031: protein of unknown function DUF1555 Site: position = -257 score = 4.52364 sequence = TGTCGGAAAAGGCAACA Site: position = -168 score = 4.89229 sequence = TGTCGGATAGGTTGACA Gene: DVUA0032: protein of unknown function DUF1555 |
*2
Desulfovibrio vulgaris str. Miyazaki F Site: position = -109 score = 5.14941 sequence = TGTCGGAATTCCTGACA Gene: DvMF_0694: protein of unknown function DUF1555 Site: position = -257 score = 4.58191 sequence = TGTCGGAAAAGACAACA Site: position = -169 score = 4.64147 sequence = TGTCGGATAGATTAACA Gene: DvMF_0693: protein of unknown function DUF1555 |
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protein of unknown function DUF1555 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |